Basic Information

Insect: Eristalis pertinax
Gene Symbol: SCRT1
Assembly: GCA_907269125.1
Location: OU026147.1:61555485-61556889[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.1e-08 8.6e-07 28.9 1.7 1 23 154 176 154 176 0.98

2 5 0.00032 0.026 14.8 0.1 2 23 186 207 186 207 0.98

3 5 1.2e-07 9.5e-06 25.6 1.4 2 23 212 233 211 233 0.96

4 5 7.9e-09 6.3e-07 29.3 0.6 1 23 239 261 239 261 0.99

5 5 5.5e-05 0.0045 17.2 0.8 1 20 267 286 267 288 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.1e-08	8.6e-07	28.9	1.7	1	23	154	176	154	176	0.98
2	5	0.00032	0.026	14.8	0.1	2	23	186	207	186	207	0.98
3	5	1.2e-07	9.5e-06	25.6	1.4	2	23	212	233	211	233	0.96
4	5	7.9e-09	6.3e-07	29.3	0.6	1	23	239	261	239	261	0.99
5	5	5.5e-05	0.0045	17.2	0.8	1	20	267	286	267	288	0.93

Sequence Information

Coding Sequence: ATGACTAAGGAGCACACCACAACCCCCTCGGGCACAATTCCCGAGGAGCTCTACAACCTGACACAGTTGGCGGAAGTGACACTTGCGGCGGGACGCCTCAGCACGACCAACATCAACGAGATCACGGATTATATAAACAAGGGCCGTCACAAGGACGAGGTGGACTGCGTGGAGGATGCGACGGCAGTCTATCGGGAGATGCATCAGCCCCAAGCGACAGTGCCGTCTCacctgcaacagcagcagaacaCCAACTTCTTCTCGTCGTCCGACGACGACTCGAACTACTACAGTCACAAGATCTTCGATCGGAAGAAATCCCGACGGTCGACGATCTCCGAACAGTCCCGCTACGATGAATTGTCGTGCAGTAGTCTGCCCAGCAGTGGCGACGAACACTATTCCGGATTGGGACATTCCAGTAAGATTTCCGAGAACTCCATGAGCGGCGACGACGACCACGTCTGCCCGGAGTGCGGCAAAAAGTATTCAACGTCTTCCAATCTGGCGCGACACCGTCAGACTCACAGATCGATTTTGGACAAGAAGGCCCGGCGGTGTCCCTACTGCGAGAAGGTCTACGTGTCAATGCCGGCGTTCTCCATGCACGTGCGCACACATAACCAGGGCTGCGAGTGCCAGTACTGCGGCAAACGCTTCTCCAGACCTTGGCTCCTGCAAGGGCACATCAGAACGCATACAGGCGAGAAGCCCTTCAAGTGCACAGTCTGCACGAAGGCCTTCGCGGACAAGTCAAACCTGAGGGCTCACATCCAAACGCATTCAAACACCAAGCCACATTCGTGCCCGCGTTGTGGCAAGTCCTTCGCCCTGAAGTCATACCTCTACAAGCACGAGGAATCCTCCTGCATGAAGAACCACCACCCGAAGACCGACAAGGACCGCTTGAGCAAGTCGTCCAAATTTGACGCCACCAAGTCCACGCTGGCGTCGAAGATCCTCCAAAAGGAAGCAGCTGCGGCCAGCAACACCATGAATCTGGCGTCCCTGGAACTGGATGACAAATCGGAGAAATCATACACAACGCTGACGAATTCCATGACGCAGGAGGACTACGATCGCTTCAAGCGGATAAGCGTGATCCGGCCGCCACCAGCAACGACCGCAAGCTTCGCCGATGTGACGCCACCCATGCAGATGAACTTCTACCAAGAGACGCCGGTGGACTTCTCGCCGAAGAACAACTTCACACATTCGACGAAGACCAGTCCGTTTGAGTTGACAGGAAACTATGCTATTGTTGCATAA
Protein Sequence: MTKEHTTTPSGTIPEELYNLTQLAEVTLAAGRLSTTNINEITDYINKGRHKDEVDCVEDATAVYREMHQPQATVPSHLQQQQNTNFFSSSDDDSNYYSHKIFDRKKSRRSTISEQSRYDELSCSSLPSSGDEHYSGLGHSSKISENSMSGDDDHVCPECGKKYSTSSNLARHRQTHRSILDKKARRCPYCEKVYVSMPAFSMHVRTHNQGCECQYCGKRFSRPWLLQGHIRTHTGEKPFKCTVCTKAFADKSNLRAHIQTHSNTKPHSCPRCGKSFALKSYLYKHEESSCMKNHHPKTDKDRLSKSSKFDATKSTLASKILQKEAAAASNTMNLASLELDDKSEKSYTTLTNSMTQEDYDRFKRISVIRPPPATTASFADVTPPMQMNFYQETPVDFSPKNNFTHSTKTSPFELTGNYAIVA*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00316270;
90% Identity: iTF_00673023;
80% Identity: -