Eper013753.1
Basic Information
- Insect
- Eristalis pertinax
- Gene Symbol
- -
- Assembly
- GCA_907269125.1
- Location
- OU026149.1:68048970-68051299[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.65 52 4.4 0.2 8 23 53 68 40 68 0.89 2 11 0.00023 0.018 15.3 0.2 1 23 286 309 286 309 0.94 3 11 0.00066 0.053 13.8 0.7 2 23 467 489 467 489 0.97 4 11 0.00059 0.047 14.0 1.0 1 23 501 524 501 524 0.97 5 11 0.0048 0.39 11.1 0.2 2 23 530 552 529 552 0.95 6 11 0.00023 0.019 15.3 0.9 1 23 558 580 558 580 0.98 7 11 0.016 1.3 9.5 6.3 1 23 588 610 588 610 0.98 8 11 0.00011 0.0092 16.2 0.1 1 23 616 638 616 638 0.99 9 11 0.00011 0.0086 16.3 0.1 3 23 646 667 644 667 0.94 10 11 0.001 0.082 13.2 1.4 1 23 672 694 672 694 0.95 11 11 9.8e-06 0.00079 19.6 3.0 1 23 698 721 698 721 0.96
Sequence Information
- Coding Sequence
- ATGTCCCAAGTGAGAACCGACATATTATTGAACGGCATGCGATTGGAGATACATCCGTCGAAGCTAACAAAATGCGGTGAAGTTCACATCAACGACGACTCTACGGATGCGTTTCTGTTTTGCGCCTTTTGCTCGGATGTGGATGGGCACGATTTGAAATTCTTTAAAACACTCCAGGAGTTCATTGATCACATACGCTGGCATCGCTCGGACGATGTACAGTATCCGGAATCACCAACGCCACCATCGGACGAGGGGAAGTGTCGCTTTGAGATAATAGATGACGACACGAAGAGCAGTTTGGGTGGACCACGTCATGATACAGACGACATAGCAGACTGGATAGCACCGCCGGAGGAGCTCTTCGAGTTGAATACAATCAGCAACTTCATCGAGATTGATCCGCAGGCAGAGGCGGCGGACGCGTGCGATGGTAAGAGTGAAGAAATCGCCGAAAGTGTGGATGAAATTGCCCCGAATGCACGAGAAAATCAAACGGCCGCAGAATATGAAGTGGAAATCCCAGAAATCACTGGGGAAGTTCTCATTGAACTGCTGGACTTGCTGAAGAAGTGCCCGTGCCTGTGGCACGTGGAGACCGCCGCGAAGACGAGTGCGGAAACAATTGAGGGCGTCTATGGCCTGATGACAGCGCACTACAACAACTGCGCAAAGCAAGCGAAATCACTGGAGTACGTGCGCGGGATTTTGACGCAGATACAGGAGTGCTTCCTGGAGGACTACAAAGACGCGGACTGCTCGACGAAGGAGGCGTTGGAACGGCTGCCGTGGTACTTCCCATATCTGAAGTTTCTCCTGGGCAGGGATTCGCACGAGCTGGACCAGAGCGTAAATTTCTTCTGTCCCGTGTGTGGACAGGAGACGACATCACAAGGGGATCTCTGGCAGCACCTCTCTCAGAAACACATGCGGCCGATGAACGACACTCAAAAAGAAGACATCACAACGGACGATTTTGACAAGGATTCGACGGTTGAAAAGAACGTATCATTTAGCCATTATCCGCAGGAAATTCTGGAGAAATTCATTGAAATCTACCGATCTCAGACGCGCCTGTGGGACAAGAACAACGACGAGTACTTCTCCCGTCCGCTGCGTCGCCAGTCGTACAACATGCTGCTGAAGATCCTGCGCCAGCACGATCCGTCCGCGTCGAAGGCGGAGGTCCTCAGCAAGATCAACAAGTTGCGCACGCAGTTCGCCTACGACCGTCGGAAGATTCTGGCATCGAAGGACAACACAAAGGTGGTGGCCCAGTCGTGGGTCTACGACAAAATGAAATTCCTCGTCGGCAATATGGGGAAGAAAACGCCGCagaagccgccgccgccgctgaaGGCCATACCGTGGAACTTCAAGAAGAAGGTGAAAAACGCCAAGTGCCCAATATGCGTCACGAACTTCAACGACCACTCGTCCTGGCTGAGCCACATGCAGTCGGCCCACACCAGCAGCGATTACCAGTCGGAGGACGGGTTCTTCTACTGCACGATATGCGGTTGGCAGAACAAGACCAAAGAGCTCCTCATGCGGCACCTGCGCAACAGGCATACGCACAACATGCAACGATGCACCGACTGCAACTTGGGCTTCCGACTCCTGTCGATGCTGGCCGAGCACCGGGCGAAGGTGCACGACGACTTCTCGCCGTTCAAGTGTGAAACGTGTGACGAGGGCTTCGCAACGCGCACTCGCCTTCGAACGCACTCGATCACGCACTGGAGTGCAGAGGACCTGCCGCACAAGTGCGAACACTGCGGCGCGAAGTTCTCCGATCGGAACAGCTGCAGCGCCCACGTCCGTCGCCACAAGGCGGACCTGAAGTACCGCTGCGAGATCTGCGAGCTGGCACTGGGGTCAAAGGCTGACTTGCGTCAGCACACGCGGACACATCTCAGCGATTGTCCGGACATATGTGATAGTTGTGGGAAAGCATTTCGCAGTGCGCAACTGTTGACCGACCATCTGAACGAGGTTCACGGTGGTGTGACGTTTCCGTGCGACAAATGCGAAAAGGAATTCAAATCGGAGAAGTGCCTGGCCGATCACTACGAGGGCCACGAGGTGCAGCATCGTTGCGATGTCTGCGGGGCGGTATTCTTCCGAAAGACATCGCTGCGCAAGCACCAGAGGCTGAAACACGACTACGTGCCATACGATCATATCAAATATGACTATTCGCTATGA
- Protein Sequence
- MSQVRTDILLNGMRLEIHPSKLTKCGEVHINDDSTDAFLFCAFCSDVDGHDLKFFKTLQEFIDHIRWHRSDDVQYPESPTPPSDEGKCRFEIIDDDTKSSLGGPRHDTDDIADWIAPPEELFELNTISNFIEIDPQAEAADACDGKSEEIAESVDEIAPNARENQTAAEYEVEIPEITGEVLIELLDLLKKCPCLWHVETAAKTSAETIEGVYGLMTAHYNNCAKQAKSLEYVRGILTQIQECFLEDYKDADCSTKEALERLPWYFPYLKFLLGRDSHELDQSVNFFCPVCGQETTSQGDLWQHLSQKHMRPMNDTQKEDITTDDFDKDSTVEKNVSFSHYPQEILEKFIEIYRSQTRLWDKNNDEYFSRPLRRQSYNMLLKILRQHDPSASKAEVLSKINKLRTQFAYDRRKILASKDNTKVVAQSWVYDKMKFLVGNMGKKTPQKPPPPLKAIPWNFKKKVKNAKCPICVTNFNDHSSWLSHMQSAHTSSDYQSEDGFFYCTICGWQNKTKELLMRHLRNRHTHNMQRCTDCNLGFRLLSMLAEHRAKVHDDFSPFKCETCDEGFATRTRLRTHSITHWSAEDLPHKCEHCGAKFSDRNSCSAHVRRHKADLKYRCEICELALGSKADLRQHTRTHLSDCPDICDSCGKAFRSAQLLTDHLNEVHGGVTFPCDKCEKEFKSEKCLADHYEGHEVQHRCDVCGAVFFRKTSLRKHQRLKHDYVPYDHIKYDYSL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -