Eper010081.1
Basic Information
- Insect
- Eristalis pertinax
- Gene Symbol
- -
- Assembly
- GCA_907269125.1
- Location
- OU026148.1:36813063-36816345[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.032 2.6 8.5 1.3 2 23 167 189 166 189 0.96 2 19 0.003 0.25 11.7 3.4 2 19 232 249 231 252 0.92 3 19 9.3 7.5e+02 0.8 1.9 3 23 264 284 263 284 0.85 4 19 0.055 4.5 7.8 0.0 3 23 293 314 292 314 0.95 5 19 0.0041 0.33 11.3 2.1 2 23 321 342 320 342 0.95 6 19 0.3 24 5.4 7.2 1 23 348 370 348 371 0.96 7 19 0.00052 0.042 14.2 3.0 2 23 378 400 377 401 0.96 8 19 0.36 29 5.2 0.0 1 20 409 428 409 429 0.88 9 19 0.0019 0.15 12.4 0.2 1 23 447 469 447 469 0.96 10 19 0.0093 0.75 10.2 1.3 1 23 474 496 474 496 0.99 11 19 6.9 5.6e+02 1.2 0.2 1 23 512 536 512 536 0.89 12 19 9.9e-05 0.008 16.4 0.3 3 23 544 564 542 564 0.97 13 19 0.18 15 6.1 3.6 1 23 570 593 570 593 0.96 14 19 0.0024 0.19 12.1 0.2 2 23 599 621 598 621 0.96 15 19 7.1e-07 5.7e-05 23.2 0.5 2 23 625 647 624 647 0.97 16 19 6.5e-05 0.0052 17.0 2.6 1 23 653 675 653 675 0.97 17 19 0.016 1.3 9.5 3.4 1 23 681 703 681 703 0.97 18 19 0.00091 0.073 13.4 6.3 1 23 709 731 709 731 0.98 19 19 0.061 4.9 7.6 0.0 1 23 737 762 737 762 0.93
Sequence Information
- Coding Sequence
- ATGGATTTGAATTGCTTGCGATGTAAGACCCCTTTGTCCGATGACTACCAATTGATTTTCGATGAGACTGGTATTGAGCTGCAACTGGACAAACTCCTGGGCGACTATTTTGAGATTTACGTAGAGAAAGATCCCTCCACGACACAGGCGCTGTGTGAAGAGTGTGTTAATAAGCTCATAGAACTCTATGACTTAACAGAGAAAAATCAGGAAAGCCCATATACTGAAGAAATTATCGAATCAGTCGCTGTCATAGAGGAGGAACAAGAAGAGTTTGTCCAGAATTTGAATAATGATGAAACAAATGTTGCAGTAGCCGTTAATGTGACCTGCAACGAGGGAGAAGAGTTTGTTGGCATCGACGAAGAGGGATGTGATAACagtttacattttgaaaatgtacAGTATCTGGATGAATTGGAGAATATCAACACTCAGGAATATGCTCGCGGTGTGATCAAGAGTGAACTGGAAGAAGTCATTTTCGACAGGAATACAGTTTGCAAGATTTGCAGTGAAGTCACAAAAAGTCACACAGGTTTACTGATGCACACATCGACCAGTCATGAATCGGAAGCGAAGACATAtccttgcataatttgcgggatgACCAATGAGTTTAATTCCATCAAAAGTCTAGCATTGCATGTTGTACTGAAGCACTATGACCTGGATCAACTCAACGTTTACTGCATTTGTCCGGAATGTGGAAAGAGGTTCTCAAATTTTATTGAATACAACAAACACTCTTGTTACAAGAAGATTATCGGAAGTCGGCTCCTGAGGGATTGCGCTGCTTGTTCGAAGAATTTTTCGTCTAACAAAAGGTATCGTTTTCACTTGCAATTTCATCTGGAAAAACGACGACCGAAGGCTTGCTTTATTTGTGACATATTATTTTCGGATGAAAATGACATGTTCGAGCACATTATGTATGCCCACGACAAGCAGGATGCGTTGATATGCAAAAAATGTGATCGAGTGTGCACGACGAAGGAGCTGTACGACAGCCATGTGAAACTGCACGAAGCTGTTCGTTCATACCATTGCAAGTACTGTACAAGGTCGTATTTGTACAAGCAAATGCTGGACAATCATATTAAACGACATCATTTTCAAAAGGACGACAACAAGTGCACGGTTTGCGATCGGTCCATGGCCAGCAAGCACCTTCTAAACAGACATATGCAAGTAGTGCATCATGAGGCGACCGAAGCCATTGTCTACGTGTGCCCGAACTGCGGACTGGTAGGAGCGTCTGCAGAGGACACCGAGgACCATATAACGGATACCTCATGTACGGAAGAAAACATTCTAATTGAGCGCTTGAAGACCGCATTCGCTTGTGAGTTCTGCGAACTGgccttcaataaagtggaaaatcTGAAAACTCATCGAGCAGTGCACACAAATAAACGATACAAGTGCTGGATATGTCAAAGCGAATACTCGGAATTTAAGAAGCTCAAAACTCATCTCATCACGCACACCAAACACGATTCAATTCAAAAAGTGTTCCCGGTCGATAGACACTACGTTTGTGATTATGAGTCGTGCGAACAATCCTACCTAACTTGGCCATCATTACGCGGTCACAAAGGTCGTCATGTTATGGAAACAAAATACGGTTGCGAAGTTTGCAATCAAGCGTTTATGACGCGCTCACAGCTGAACTCGCATTTGAAGGCGCATGAGAACAATGAAGAGTACCACTGCCAGTTCTGTGCGAAAATGTGCTTTTCTCAAATGTCTCTGGCTGTGCATATCGCTCGAAAGCACAACACCAATTTCAAAACGTGTCCAACATGCAAGGCAACGTATAGTACAGACGAAGCACTAACGGACCACATTGAAATGAATCACATCGAGTTGAAGTGCGAATACTGCGGAAAGATGACTAAGAATAGGCGAAATCTTGAAATACACATCCGAATGGTTCATAAGAAGGTGAAGAGGTTTTTCTGCAAATTATGTGATAAAGGATACTACAATAAAAGTGACTTTAAGGTCCATGAGAAGACACACTCGGAGGCGCACAAGTTTAAATGTCAGCACTGTGACTTCAGCACCAGCTACGAAGTATCCTTTAATGCGCACTCCCTAAAGCACGAGTCCAAGAAGCCTTTCAAGTGTCAGGAGTGTTCAAGAGAATTCACAAGGAAGACATGCTTCAAATTGCATCTTTTACGGCATTCCGATGTCAAACCGTTTGCCTGTCCAGTGGAGGACTGCGAAAGAAGTTTCGTAGCTCAAGGAATTCTCAATTCACATCTACGAGACAACCATCCTGAGTGTGTTCCTGCCGAATTGATGGCGAAACGGGGCTCATCTCGTGCAGTAAAGCGAAAGAAACGGGACGAGCAAGAAGCAGAGCCGACTGAGAATCGCCTGAAGTACATTATTATGGAAGTCGGTTCAGATGTGCCAACAATGGAAGTTGAATATGTTGAGGAAGAGAGTGAAATTGTCTTTGCGGAGTCCGCTAACGAACAGGACATTGTCCTTGAGTACGATGACCAGGATAGTGATTTAATAGTAGACCTTAATCAAGCGGAATTCAGTGAATTTACTATGAATGAATAG
- Protein Sequence
- MDLNCLRCKTPLSDDYQLIFDETGIELQLDKLLGDYFEIYVEKDPSTTQALCEECVNKLIELYDLTEKNQESPYTEEIIESVAVIEEEQEEFVQNLNNDETNVAVAVNVTCNEGEEFVGIDEEGCDNSLHFENVQYLDELENINTQEYARGVIKSELEEVIFDRNTVCKICSEVTKSHTGLLMHTSTSHESEAKTYPCIICGMTNEFNSIKSLALHVVLKHYDLDQLNVYCICPECGKRFSNFIEYNKHSCYKKIIGSRLLRDCAACSKNFSSNKRYRFHLQFHLEKRRPKACFICDILFSDENDMFEHIMYAHDKQDALICKKCDRVCTTKELYDSHVKLHEAVRSYHCKYCTRSYLYKQMLDNHIKRHHFQKDDNKCTVCDRSMASKHLLNRHMQVVHHEATEAIVYVCPNCGLVGASAEDTEDHITDTSCTEENILIERLKTAFACEFCELAFNKVENLKTHRAVHTNKRYKCWICQSEYSEFKKLKTHLITHTKHDSIQKVFPVDRHYVCDYESCEQSYLTWPSLRGHKGRHVMETKYGCEVCNQAFMTRSQLNSHLKAHENNEEYHCQFCAKMCFSQMSLAVHIARKHNTNFKTCPTCKATYSTDEALTDHIEMNHIELKCEYCGKMTKNRRNLEIHIRMVHKKVKRFFCKLCDKGYYNKSDFKVHEKTHSEAHKFKCQHCDFSTSYEVSFNAHSLKHESKKPFKCQECSREFTRKTCFKLHLLRHSDVKPFACPVEDCERSFVAQGILNSHLRDNHPECVPAELMAKRGSSRAVKRKKRDEQEAEPTENRLKYIIMEVGSDVPTMEVEYVEEESEIVFAESANEQDIVLEYDDQDSDLIVDLNQAEFSEFTMNE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00672990;
- 90% Identity
- -
- 80% Identity
- -