Eper009223.1
Basic Information
- Insect
- Eristalis pertinax
- Gene Symbol
- -
- Assembly
- GCA_907269125.1
- Location
- OU026148.1:5470055-5472898[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0056 0.45 10.9 0.4 3 23 36 56 34 56 0.97 2 17 0.011 0.85 10.0 5.9 1 23 62 85 62 85 0.90 3 17 0.0005 0.04 14.2 0.7 3 23 90 111 88 111 0.94 4 17 0.051 4.1 7.9 0.0 2 20 120 138 119 140 0.91 5 17 7.7e-06 0.00062 19.9 0.6 1 23 148 170 148 170 0.97 6 17 0.0011 0.091 13.1 2.5 1 23 176 198 176 198 0.97 7 17 0.00022 0.018 15.3 2.6 1 23 204 226 204 226 0.95 8 17 0.78 63 4.2 4.7 2 22 233 253 232 253 0.93 9 17 2.5 2e+02 2.5 2.3 1 23 522 545 522 545 0.94 10 17 0.17 14 6.2 2.1 1 23 569 591 569 591 0.95 11 17 0.34 27 5.3 4.0 1 23 599 623 599 623 0.96 12 17 0.0022 0.18 12.2 0.3 2 23 628 649 627 649 0.96 13 17 0.00057 0.046 14.0 0.3 2 22 661 681 660 681 0.93 14 17 0.00041 0.033 14.5 0.3 1 23 689 711 689 711 0.93 15 17 1.7e-05 0.0014 18.8 3.6 1 23 717 740 717 740 0.97 16 17 4.3e-05 0.0034 17.6 0.2 1 23 746 768 746 768 0.98 17 17 0.0015 0.12 12.7 1.0 1 21 774 794 774 795 0.95
Sequence Information
- Coding Sequence
- ATGACTGAAAGTCTGGCGGCTGGGACTGTGGCAATGCCCGAAGGTTCCACGCAACACAAGATGTTCGTCGAGCTGACAACAGACAAGACTGGACCGAAGCTGTTCTGTCCACTGTGCGAGAGCACTCTCACCTCGCTCAGTGGATACGTGCGGCACATGAAGAAGCATGAGCTACCGGGAGGTTTCTGTTGCAACTACTGCGACGAACGGTTTTGCATGGAGGACCTCCTCAAGAAGCACAAGGACGAGAAGCACAAAGTGCTAGCCTGTCGGATATGTCATGCCACATTTACGACCGCCACCGAGTACCGCACCCACATCAAGGACATCCACAAGGGCATCGATCGGCTGATGTCCGTCTGCGAGCGGTGTGGAGCTGAGTTCAAGACGCCACAGGCGGCGAAGCGACACGCCGACACCCAGTGCGGTCAGATAAAGCCACATCCGTGCGATGAATGCGGAATGGCATTCTACACGAAGTACAACCTGGCTGAGCACAAGAAAATCCACGGCGGGGAGAAGAAGTTCTGCTGCAGCTACTGTGGCAAGAGTTTCCTCAGCAACGGGCGACTGATGATACACGAGCGCAGCCATACGGGAGAGAAACCCTACAAGTGTGACGTTTGTGGGAAATGCTTTGCCCACCGCGAGAGCATTGTCACGCACTCGTCCATTCACACGGGCATAAAGCTGGTGGTGTGCAAGTGCTGCGGCGCCCGGTTCTCGTGCCATTCCAACTTGATCAAGCATCGCCGAACGAGGCAGGACACGTGCGGCCTGCCCATGTACGACTCGACCAGGGAGACGAAGCGGTCAAGGATCTCGAGAAGTATGGCTTTAATGAAGACAGCGCTACGAATGCTAATGTTTCCTTTCGTTGCAGTTCCTGCCAGTCTCATGTCGTCGGAGATTAAAATAGTCCAAGCCAGCATGGTCATCAATCCCAATGAGGAGCGGAAGAAGCCGACTGGCGCAAGGGTCAAGCACAAAGTACCCAAAGACGACTTGGAACAGGACGAGGAAGAAGTCATCATCAAGCGACCACGACGCTCCCAGCGATCTGATGAATCGGTGAAGGAAACAGTGGAACATGAGCCGTTCGAGAAGGAACCCGAAGATGAGAGCTTCTTCGAGGACTGCGCGTTCGAGAATTCTCAAGAATCGCACGAATCTTCTCCAATCGACCAGCCAGATGTGAAGCCACCAAATCTGAGTGAAATCCTGAAAGAAATTCTGCCCAAATCCGAGGAAGAAATGCAAATTCCTGAGCCCAGCAAAGGTGACATCTTAGACAGCCTCCTTCTGGACATCGATGAAGAGGTCAAGGAGGGCCTGCTGAAGGATATCAAAGAAGAACTACCAGTCGCAACGGCTAAGACTGAAAGCATCCTCCTCAAGCCGTGCAAAGTTGTTCTCGAAGACGTCACCCTGAAGTACCCGAATCTCTGCCCTCAGCCGTCTAAGCCCCCACCGTGCGAAAGCGAACGCGATAAGCCGCCCAACGTCAAACGGAAGCGCTCAGCCTTGAGGATGAAACTGCGCATCTTCAAGAAGGACCGCGTGTACGACTGTAAATTCTGCGTGAAGATCTATCACCTTCGGAAGCCGTACGAAAAGCACCTGATGCAGGAGCACAACAAGACTGACGACGAGTTACGTTCCATATTCGAGGAGGAAGACAACGACATTCCCGCCGAATTGGTGCACCGCTGTCCGATTTGCTTCAAGGTCTACCTGATGGCCAAACGACTGAAGACCCACATCACATACCACGGTCACGATGGcaaactgattcacaaatgtccTTGCTACTGCAAGTCCTACTTTAGGACGAAAGACGAGGCCATGGAACACGCTAAGGTCACGCACAAAAGCGCCCTCTATTGCGAAGTGTGCGACAAGTACACACAGTCACCCGAGGCGCTGAAGATTCACAAACGCAACCACTTCGAGCGGCGCAAGCAGACCGATCGCAATCTAATCTGCGACAAGTGCGCCAAGTCCTTCGCCAGTCGGACCTCGTTGAACGATCACACGCGTTCCAATTGCGGCCGGAATCCCCTCTATCGCTGCGACATTTGCGACAAGAACTTCACCTCGGCTGGCATCTTGAAGACCCACTCGCTGCTGCACAAGGACGAGACGCCGTTTGTGTGCGACAAATGCGGCAAGGCGTTCAAGATTCAGTCGCAATACAAAACTCATCTGAGGCACAAGCATTCGAATGCCAAGCCATACAAGTGCGATCTGTGCCCGAAGCAGTATCCCTACCGAGAGAGCCTGCTCACCCACATGGCCATTCACACTGGACTGAAGCGCTATGCGTGCAGTGGATGCAGCAAACGATTCACGTGCATTTCCAATCTGCAGGCACACCGACGGGTGTACGCGGACACCTGTGGACTGACGCCACTGAACTCAAAGCCGAGTCAATACATCGGAATGCAGAAGGGACTGCTTCTGATGGGCAATAAACCgactttttaa
- Protein Sequence
- MTESLAAGTVAMPEGSTQHKMFVELTTDKTGPKLFCPLCESTLTSLSGYVRHMKKHELPGGFCCNYCDERFCMEDLLKKHKDEKHKVLACRICHATFTTATEYRTHIKDIHKGIDRLMSVCERCGAEFKTPQAAKRHADTQCGQIKPHPCDECGMAFYTKYNLAEHKKIHGGEKKFCCSYCGKSFLSNGRLMIHERSHTGEKPYKCDVCGKCFAHRESIVTHSSIHTGIKLVVCKCCGARFSCHSNLIKHRRTRQDTCGLPMYDSTRETKRSRISRSMALMKTALRMLMFPFVAVPASLMSSEIKIVQASMVINPNEERKKPTGARVKHKVPKDDLEQDEEEVIIKRPRRSQRSDESVKETVEHEPFEKEPEDESFFEDCAFENSQESHESSPIDQPDVKPPNLSEILKEILPKSEEEMQIPEPSKGDILDSLLLDIDEEVKEGLLKDIKEELPVATAKTESILLKPCKVVLEDVTLKYPNLCPQPSKPPPCESERDKPPNVKRKRSALRMKLRIFKKDRVYDCKFCVKIYHLRKPYEKHLMQEHNKTDDELRSIFEEEDNDIPAELVHRCPICFKVYLMAKRLKTHITYHGHDGKLIHKCPCYCKSYFRTKDEAMEHAKVTHKSALYCEVCDKYTQSPEALKIHKRNHFERRKQTDRNLICDKCAKSFASRTSLNDHTRSNCGRNPLYRCDICDKNFTSAGILKTHSLLHKDETPFVCDKCGKAFKIQSQYKTHLRHKHSNAKPYKCDLCPKQYPYRESLLTHMAIHTGLKRYACSGCSKRFTCISNLQAHRRVYADTCGLTPLNSKPSQYIGMQKGLLLMGNKPTF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00671728;
- 90% Identity
- -
- 80% Identity
- -