Eper009290.1
Basic Information
- Insect
- Eristalis pertinax
- Gene Symbol
- -
- Assembly
- GCA_907269125.1
- Location
- OU026148.1:7016464-7019011[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.7 3e+02 2.0 0.3 1 11 16 26 16 29 0.88 2 14 6.2 5e+02 1.3 0.1 1 9 310 318 310 334 0.82 3 14 0.002 0.16 12.3 0.1 1 23 339 362 339 362 0.92 4 14 0.33 26 5.3 4.2 1 23 371 393 371 393 0.98 5 14 0.0001 0.0082 16.4 4.2 1 23 400 422 400 422 0.98 6 14 1.8e-06 0.00014 21.9 0.4 1 23 428 450 428 450 0.99 7 14 0.00026 0.021 15.1 1.1 1 23 457 479 457 479 0.97 8 14 5.2e-05 0.0042 17.3 0.4 1 23 485 507 485 507 0.97 9 14 5.9e-05 0.0048 17.1 0.3 1 23 513 535 513 535 0.98 10 14 4e-05 0.0032 17.7 0.3 1 23 541 564 541 564 0.94 11 14 0.00018 0.014 15.6 3.7 1 23 570 593 570 593 0.97 12 14 8.8e-07 7.1e-05 22.9 2.6 1 23 599 621 599 621 0.98 13 14 0.00027 0.022 15.0 0.4 1 23 627 649 627 649 0.96 14 14 0.00071 0.057 13.7 0.9 1 22 655 676 655 679 0.92
Sequence Information
- Coding Sequence
- ATGACGGAAATCATTGACCGACTGGCCAGCTACACGACGGAAATCTTTAAGTGCTTTCTCTGCGATCGATTGTTCGCCGATGGCGATGAGCCATGGCATATGTTCGAGAAAAGGATTCTCGAAAATGGACAAGCCGAGTGCTCCCTCTCGGTCATTCTGTCATCGGCCCTTGGCAAAGAGCTGGAACAAGAAAGCGTCCACTCAAGGTTGCTCTGCGACGAGTGCAACATTGTTGTGCTCGAGTACGAGAGTCTGGAAAAGCGATTCTATCAGTTTCGCTTGAAGATTCTCACCGACTACAACAACACGGCAAAGGAGAACGGACTGAATCCGATTTGGTTTGAGATAAGCGAAGTGGACGATTCTCAGGCACAATCGCAAGCGATAGAGAATGAGGCCATTCTGAATGTGATGGAAGTGAAGACCGAACATGAGGTGGAGGAGACTATTGTCGACGACATACCGATGCTGGATGCGCAGGAGATATCCGGCTATGTGGTGGAAGACGAACATGAGCAGTATCATGACGACTCTGTGGAGGAATTCAATCAGGAAGTGACTGGTGTCGTCGACGGCGGGGATGGACATGTGattgaagaagacgaagaagagggcgaggaggagcaggaggaggacgATGAAGaggagcagcaacagcacacTGATGAGTTCCCCGAAAGAAATATCCAGGTTATGACCGAAGAAATACCCTACGAGCAAATCATTGAACAGAACTCAGTCATCAGCTACGACAACAGTGTAGACGCCCCCGAATCCGCAATCGATTACAACAGCAGCGTCGGTGACGAAGATAAATCACGAAGCATACTGGCGCACGACGTGACAAAGCTAACGAAGCAGAAACGTTCCGGACGCCCGGGTAAACGCGAATCCCTAACCATCGAATTTGAGTTCACCGGCAGCATGTACGTGTGCCCACTGTGTCCCGAGAGGATAGAATACGAGCCAATGCTGTTCGCGGGACATCTGAAGACGGTGCACAATTACAAGTACTACGTGTGCGACATCTGCTACAAGGGATTCAGCAAGCGCAACGAAATCAACGACCACATAGATGACGTGCACGGGGCGACCGCAGAGGAGGGCGAATTCAAATGCGAAACCTGCTTGCGGGTGTTCCTCAACCATCGGCTGTTTCGGATACACAAGCGACTGCACTATAGCTCGACGAAGCAGCATGAGTGCTCCGAGTGCCACAAAAAGTACAGCTCGAAGAACCTGCTGGACGAACACATGAATATGCACACCGGCAAGAGGCCGTATAAGTGCGCGTCTTGCGGCAAAGATTTCGCATCGAAGTACACGTTGCAGGCGCATTTGAAGATCCACACGAAGCGACCGCGGCCGTACAGCTGTGACGAGTGTGAGAAGTCGTTCCTGAACCAACAGAACCTGGTGCAGCACAAGAAGCTGCACTCCGGGCTCAAGTCGTTCGTGTGCGACGTCTGCCAGAAGGCCTTTGGCACGCAGCACAACCTGGACGTGCACAAGATAGTGCACTCGGGGAACAAGCCGTTCATCTGTCGCACCTGCgggaagggcttcgcccgtcgAGCCGAAATACGGGACCACGAACGAACGCACACCGGGGAGCGACCATTTATGTGCGACCTCTGTCCAATGGCGTTCGCGCAACGGTCGAATCTCATGACGCACAAGAAGGCAACGCATTTAAACGACAAGAAGCACAAGTGTACGCTGTGCGAGAGGTCCTTCAAGCGACGACGCCTGCTGGagtaccacacgcagtcggcgCACACGGGCGAACGTCCGCACAAGTGCGAGGTATGCGGTGCGACATTTGTCTATCCGGAGCACTTCAAGAAGCACATGCGTATCCACAGCGGCGTTAAGCCGTACGCCTGCGAAGTTTGCGGCAAGCTGTTCAACAGCAGGGACAATCGCAACGCGCACAGGTTCATTCACAGCGAGAAGAAACCGTACGAATGCCTTGAGTGCGGGATGGGCTTCATGCGGAAGCCGCTGCTGCTGTCGCACATGAAGCACACGAAGCACGTGAACGACACGATCATAGTCAACCAGCCGCAGATCACCCACAAGGGAGTGGACGACGCCGAGAAGGAGCTAATTGAGGAGGAGCTAGGTCTGGGAAGTGTCATCTCGGGCACCAACTACGACGAGGTGGTCACGTCGGACACGATCCTGGTCGAAGACGGCGATGGACAGTACATCAAGGACGAGGACGGAGAGGTCAAGTACCTGCAGTTCACCGAAATGGACAAGGATGGTCAGGCGACGTTCACGTGGGTCGACATCGGTGAGGACAAGGACGACAACTAA
- Protein Sequence
- MTEIIDRLASYTTEIFKCFLCDRLFADGDEPWHMFEKRILENGQAECSLSVILSSALGKELEQESVHSRLLCDECNIVVLEYESLEKRFYQFRLKILTDYNNTAKENGLNPIWFEISEVDDSQAQSQAIENEAILNVMEVKTEHEVEETIVDDIPMLDAQEISGYVVEDEHEQYHDDSVEEFNQEVTGVVDGGDGHVIEEDEEEGEEEQEEDDEEEQQQHTDEFPERNIQVMTEEIPYEQIIEQNSVISYDNSVDAPESAIDYNSSVGDEDKSRSILAHDVTKLTKQKRSGRPGKRESLTIEFEFTGSMYVCPLCPERIEYEPMLFAGHLKTVHNYKYYVCDICYKGFSKRNEINDHIDDVHGATAEEGEFKCETCLRVFLNHRLFRIHKRLHYSSTKQHECSECHKKYSSKNLLDEHMNMHTGKRPYKCASCGKDFASKYTLQAHLKIHTKRPRPYSCDECEKSFLNQQNLVQHKKLHSGLKSFVCDVCQKAFGTQHNLDVHKIVHSGNKPFICRTCGKGFARRAEIRDHERTHTGERPFMCDLCPMAFAQRSNLMTHKKATHLNDKKHKCTLCERSFKRRRLLEYHTQSAHTGERPHKCEVCGATFVYPEHFKKHMRIHSGVKPYACEVCGKLFNSRDNRNAHRFIHSEKKPYECLECGMGFMRKPLLLSHMKHTKHVNDTIIVNQPQITHKGVDDAEKELIEEELGLGSVISGTNYDEVVTSDTILVEDGDGQYIKDEDGEVKYLQFTEMDKDGQATFTWVDIGEDKDDN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00672985;
- 90% Identity
- iTF_00672985;
- 80% Identity
- -