Basic Information

Insect: Eristalis pertinax
Gene Symbol: -
Assembly: GCA_907269125.1
Location: OU026145.1:107289309-107291436[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0004 0.033 14.5 6.0 2 23 230 251 229 252 0.95

2 11 0.00033 0.027 14.8 0.1 2 21 322 341 322 342 0.95

3 11 1.5e-07 1.2e-05 25.3 0.4 1 23 350 372 350 372 0.98

4 11 8.9 7.1e+02 0.8 0.1 2 23 377 399 376 399 0.87

5 11 9.2e-07 7.4e-05 22.8 1.9 2 23 406 427 405 427 0.98

6 11 2.7e-07 2.2e-05 24.5 0.4 1 23 433 455 433 455 0.95

7 11 9.1e-07 7.3e-05 22.8 0.3 1 23 461 483 461 483 0.99

8 11 9.5e-06 0.00076 19.6 0.4 1 23 489 511 489 511 0.97

9 11 3.2e-05 0.0026 17.9 0.9 1 23 517 539 517 539 0.98

10 11 0.00015 0.012 15.9 2.9 1 23 545 567 545 567 0.99

11 11 2.2e-06 0.00018 21.6 0.5 1 23 573 595 573 595 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0004	0.033	14.5	6.0	2	23	230	251	229	252	0.95
2	11	0.00033	0.027	14.8	0.1	2	21	322	341	322	342	0.95
3	11	1.5e-07	1.2e-05	25.3	0.4	1	23	350	372	350	372	0.98
4	11	8.9	7.1e+02	0.8	0.1	2	23	377	399	376	399	0.87
5	11	9.2e-07	7.4e-05	22.8	1.9	2	23	406	427	405	427	0.98
6	11	2.7e-07	2.2e-05	24.5	0.4	1	23	433	455	433	455	0.95
7	11	9.1e-07	7.3e-05	22.8	0.3	1	23	461	483	461	483	0.99
8	11	9.5e-06	0.00076	19.6	0.4	1	23	489	511	489	511	0.97
9	11	3.2e-05	0.0026	17.9	0.9	1	23	517	539	517	539	0.98
10	11	0.00015	0.012	15.9	2.9	1	23	545	567	545	567	0.99
11	11	2.2e-06	0.00018	21.6	0.5	1	23	573	595	573	595	0.98

Sequence Information

Coding Sequence: ATGTCGCTAGATTTTACAGTGATTTGTCGTACATGTTTGGCCCTTGAGGGGGCAGTTCTATCAATCTACGATAGCAAAGACTCGTCTGGTAACCATGGATGCGTCGCTGATATGATTGCAGATTTAACAAATATTCCCCCAAAGAAAGAAGATGGAATGCCGGATAAGGTCTGTCTCACTTGCATCAGTGAAATCAATCGATGCTATTCGTTTAAGATCAAATGTGACAACTCTGAACGTACGCTGAGACAACTTCTTCACATggacgatgaagaagaagacgaagaagaagctgaagaagaatcCAAATTTAAAGATGTGGCCTTAGGCCCTGCAGAAGCCCGAGATGAAAAGAAGACACAATTGAGGCATAAAACTGAGACAGGCTTTAGGGTACTTAATCAAGATTGTGAACAAGTTCATAGCGGATCCACTGATGTCTATGCGGTGCGTTCTGAGGAAGAGATGGAAACATCTTATTTTGTCATCTCTGAAGAagtggatgacgatgaagagaaCGACGAAAAAGAAGATCCCCAGGAGGACGGCAATTCCATTGAATATGATGAGATTCTTCAAAAATATAGCGCCCAGACACGGGAAGAAGGCGAAGATGGAGCAAACGATGAGCTAGCTGAGACAGAATCGAACAAACAAAGGGAATCGAAGAACAAGAAGGTCGAACAAAAGTGTCCGAGATGCCCGATGAAATTTGTTCATCCAAGGAATCTGTCCAAACACATTCATCGACATCACATTGTGGGGGGCTCATTGGTGGATCCGGAGGAGACAAAACATCTGACTTACAAGGACGCGGCTGAGGCAGAACAAGAAGATAACGAGCAACTAGAGGAGCACGATGGTTACGAGTTGGAATTCCAGTCCATTGACGACCCCGAAGATCCAAATTTGATGGAGGATTCTTCACAGAAGGAGGAAGCCGACAACAAATTGCAAGAGCGGCGATGTCCCCGTTGCGGAGCTGGTTTTGCACAGCAGAAATCTCTCAACATTCACATCAAGCAGAACAAGTGCACAGAGAGGCAGTACTCCTGTGGGAAATGTCAGAAAGTGTTTATTTCCAAGGATAATCTCCGTGTGCATATTCGGGCGCACAAAGAAGAGGTCCGGTGCCTCTTGTGTGGCGATATCTTAAAGGATCGGATAACCCTGATCGAGCACAAGGCGGAAAGACACAATACGAAAGCCAGGAACCAGTGTCCACACTGCAAAAAAGTTTTTACAATGCTCTCGACGCTCAAGGATCACATACGCGTTCACAGCGGCGAACGTCCGTTCCTGTGCTCGATTTGCGGCAAGGGCTTCAGTCAGAGTGCCAATTTGAAGCAACACGTAATGCGGCACAATAAAACCAAGCCCTACAAGTGCGAAGTATGCCCACGATCGTTTGTCAGCAAAGGCGAACTCTACTCGCACGTCCGAAGTCACACAGGCGATCATCCATTTGCATGCGATCTTTGCAAGGCGGCATTCACAACGTCCAGTTCGCTCGTGAAACACAAACGCATTCACACCGGAGAACGTCCGTATGCATGTGAGTATTGTCCAATGCGTTTCACCGCACTAAACACGCTGAAGAACCACAGGCGGACACACACTGGCGAAAAGCCGTACAAATGTAAGTATTGTCTGCGAGGGTTTGCTCAGAAGAGCGATTGTGCAATCCATATGCGAACCCACACAGGTGATCGGCGGTACATATGTCAGGTTTGTGGGTCAGCATTCTATCAATCCGGCTCTCTGCGCACTCACATGAAGACGCATCGGGACCGCAAGGATGGCAAAGCGAAGAGCGAGGATGCGGAGCAAACGACGCCAATCGTCGAGGAGCTAGCGGATAACGAGGAAAACCAGGAAGACAAAAAACCGGTCATTGACCTGCCTGCTGGCGCAGTATTGGGCGAAGATGAACTCGTGCATTTCGCCATCGAGGAGTGCTCTAGCGAAAATAACGACTTCGGTGGCGAATGA
Protein Sequence: MSLDFTVICRTCLALEGAVLSIYDSKDSSGNHGCVADMIADLTNIPPKKEDGMPDKVCLTCISEINRCYSFKIKCDNSERTLRQLLHMDDEEEDEEEAEEESKFKDVALGPAEARDEKKTQLRHKTETGFRVLNQDCEQVHSGSTDVYAVRSEEEMETSYFVISEEVDDDEENDEKEDPQEDGNSIEYDEILQKYSAQTREEGEDGANDELAETESNKQRESKNKKVEQKCPRCPMKFVHPRNLSKHIHRHHIVGGSLVDPEETKHLTYKDAAEAEQEDNEQLEEHDGYELEFQSIDDPEDPNLMEDSSQKEEADNKLQERRCPRCGAGFAQQKSLNIHIKQNKCTERQYSCGKCQKVFISKDNLRVHIRAHKEEVRCLLCGDILKDRITLIEHKAERHNTKARNQCPHCKKVFTMLSTLKDHIRVHSGERPFLCSICGKGFSQSANLKQHVMRHNKTKPYKCEVCPRSFVSKGELYSHVRSHTGDHPFACDLCKAAFTTSSSLVKHKRIHTGERPYACEYCPMRFTALNTLKNHRRTHTGEKPYKCKYCLRGFAQKSDCAIHMRTHTGDRRYICQVCGSAFYQSGSLRTHMKTHRDRKDGKAKSEDAEQTTPIVEELADNEENQEDKKPVIDLPAGAVLGEDELVHFAIEECSSENNDFGGE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00672977;
90% Identity: -
80% Identity: -