Basic Information

Gene Symbol
bab1
Assembly
GCA_907269125.1
Location
OU026147.1:76770749-76772868[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1e-17 1.6e-14 53.1 0.0 1 43 58 101 58 103 0.95

Sequence Information

Coding Sequence
ATGAAAGCTAAACTTCTGGAGAACTCTCACACGTGGATGGGCGCTTCTACATCATCTATAGCagACAGTTATCAATACCAATTGCAATCTATGTGGCAAAAATGTTGGAATACGAATCAAAACTTAATGCACCATCTACGATTCCGAGAACGTGGCCCTTTAAAATCTTGGCGACCAGAAACAATGGCTGAAGCAATTTTTAGTGTGCTAAAAGAGGGATTATCACTGTCGCAGGCCGCCCGCAAATATGACATTCCATACCCAACCTTCGTTCTGTATGCAAACAGAGTTCACAATATGCTGGGCCCATCGATAGACGGTGGCACAGACTTACGACCAAAGGGCAGAGGACGTCCTCAACGAATTTTATTAGGGATTTGGCCAGACGAACACATAAAAGGTGTTATAAAAACAGTCGTATTTCGAGATGCAAAGGACCTAAAAGATGACAGTATACATTTGCACTACGGACGGCACTCGCCGGTTTTTCCATTTCAAGATAATACACTTAACTACACAGGAGCGCCTGTATGCCATAATGGATTACCTACAGGACCAGTTGGACCCACAGTTGCTGATTCAATGTCACAAGAGGCTACCGCAGCCGCGGTTGCTGGTGTTGCACATGCCTTGCGCCAGCAAATGCAAATGGCAGCAGCcgttcaacaacaacagcagcagcagcagcagcaacaccaacatCATCCACAGCAACACCAACAATCATCACATTCTCATCATCACCCAGAAGCTACAACAAACATTTTCAACCTACCCTCTCATTTATCACCTCATGGCGCTGCTGGAGGAATCCCGTTACCAAAGCAAAACTCTCCACTATCTGGCAGCACCGGACAGAACCCATTACAAAGGCACGCATCACCGTCCGCACCGACGATGTCAGGTCTTCCTAATCAATCGGTATTAAACTTAGCCAGCATATCTGGTCTTCATATGGTTCCCGGTATGGGATCAAATATGACTTCAACAGGGGGTGCATCATCATCTTCAACGTCTAGTGTTCATCGTGGAGATGGTTCATCACAAGCAAGTCATCAGTCAAATATTTCACCTGCCCATATACCGTATAGTAGCAGTAGTTCTGTATCGCATGCGCCTCAACATGCGACAGCACCACCGTCCAGTAGCAGTAATACGCGGCTGCACTCAACGTCGCCCTCCGAATCTGCACATGATCTCCGGATGAACAGTCCTGAAGAGCGCTTACTTAACTCACCTTTGCAAATGTCTCTTGAGCCATCAGTCAACTTGGCTGTTGGAGTGAGTGGAATGGCTTACAAACCATCCAGGGGGTACTCATCACCACGACCTGAACATCTCTTCCAGGAGGACATTGCTGAACTAGTGGGTTCTGCAAGTGATAGATCTTCAACATGTCCTTCGAATCTAGAAAACTACAAAGATCCACCCACTAATATCAAAATGGAACCAATAACTGAGTGCCGCTCTGAATAA
Protein Sequence
MKAKLLENSHTWMGASTSSIADSYQYQLQSMWQKCWNTNQNLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGTDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDLKDDSIHLHYGRHSPVFPFQDNTLNYTGAPVCHNGLPTGPVGPTVADSMSQEATAAAVAGVAHALRQQMQMAAAVQQQQQQQQQQHQHHPQQHQQSSHSHHHPEATTNIFNLPSHLSPHGAAGGIPLPKQNSPLSGSTGQNPLQRHASPSAPTMSGLPNQSVLNLASISGLHMVPGMGSNMTSTGGASSSSTSSVHRGDGSSQASHQSNISPAHIPYSSSSSVSHAPQHATAPPSSSSNTRLHSTSPSESAHDLRMNSPEERLLNSPLQMSLEPSVNLAVGVSGMAYKPSRGYSSPRPEHLFQEDIAELVGSASDRSSTCPSNLENYKDPPTNIKMEPITECRSE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01044639;
90% Identity
iTF_01542133;
80% Identity
-