Esep005453.1
Basic Information
- Insect
- Eristalinus sepulchralis
- Gene Symbol
- -
- Assembly
- GCA_944738805.1
- Location
- CALYJE010000035.1:3142938-3145271[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.6 8.3e+02 0.9 0.2 1 14 79 92 79 96 0.76 2 13 0.0029 0.32 11.6 0.8 1 23 179 202 179 202 0.96 3 13 0.0074 0.81 10.4 2.1 3 21 210 228 208 229 0.92 4 13 0.028 3.1 8.5 0.1 1 23 262 284 262 284 0.96 5 13 5.2e-05 0.0056 17.2 5.5 2 23 289 310 288 310 0.97 6 13 0.0081 0.89 10.2 1.0 1 21 316 336 316 337 0.88 7 13 0.0043 0.46 11.1 2.9 2 23 345 366 344 366 0.96 8 13 2.6 2.9e+02 2.3 0.1 1 23 520 545 520 545 0.89 9 13 0.0025 0.27 11.9 6.9 1 23 551 573 551 573 0.98 10 13 0.00044 0.048 14.2 1.2 1 23 578 600 578 600 0.99 11 13 7.3e-07 7.9e-05 23.0 1.4 1 23 606 628 606 628 0.99 12 13 0.0028 0.3 11.7 4.0 1 23 634 656 634 656 0.99 13 13 0.00041 0.045 14.3 1.1 2 21 663 682 662 683 0.93
Sequence Information
- Coding Sequence
- ATGAACGAAGCATTAGTTAATGTAAAATGCCTTGAATCTCGCATCAATTGCGATGGAAAAGTGTCCAATCGAGTGGCCCTCGCTATGGAGGAGTTCAAGAAAGTGTGTCGCACATGTCTCCGCGAAACGACAGCCAACAACCTGGAGAACTTTCTTCTGCCGCAGCTAACAATCAGGGAAATTCTCGAGGAATCCACGGGTTTGCATATTGAACCAGCCGACTGTCTGCCCGATCACATTTGCAATGATTGCCTGAAGAGGATCAAAACGATTTACAAATTTCGCTGGCAGTGCCTGCAAGTAGACGAGGCTCTCCGCGCTCTACTCACAAGAATTGAACCGAAGCCGGCCGAAGAGCCGCAAATTATTCCGGTGGTGGTGGGAAAAGTCGATAACTGTGCGGACTCCACCATCCAATACGATCAGTTTCAAGTAACGTACTTGGATGAAAATAGCGACGCGACCAAAGCAGCCGAGGTAGAAACTGAAGGCGAACAGCCGGAACAGGGCCCTCCAACTGAGAAGAAGAAACTCTTCCGCTGCGGAATCTGCTTGCGGGAGTTCACCTTCCGCAACGGTCTTCATGACCACATTCAGTTGGCACATGTACAAAAGAAGGAGATGCATTGTCAGAACTGCGGTCGGAAGTTCAGGACAAGGGCAAGATTGCTGCTGCACAAGAAGAGGAATTGTGCGCCAGCGAATAGCGGTCTGACCTTGGTGGAAAGAGAACCATGGCGAGCTGTTGTTACCATTAAGGACGACGAGATTGAAATCACAAATTTCCAATGCTCAATCTGCGATGAGTCTATCGAGCTGGAAAAGGATTTCTTGACCCACTTGCAGGCCCACTGGAACGTGAAGACCTGTAAGCACTGCAATAAGAAGGTTAACCGACCGTCACATTTGGAAAGTCATGTGCGATCGCATAGCAGATTTCGTCCGTACGTGTGTCCGTACTGCTCGAAGGCGTTCAGCGCCACTCAGTCATTGCGCTGCCATCTTCAAACGAACAACCAGCGACAGGCGCAGACGTGTCGGAAGTGCGATATAGTATTCTGTTCCCTCAAGGACTATCTCAAGCATTACAATGAGCACATTCTTAATGGGGAAATCGTTCTCGATGAGAACACTGAAGCGAAGGGTCCAAGCCCCCAGGCAGCACACTCAAAAAATTCCAGTGAGACAGTAGAAAAAGGTGTAGAGCACCAAGAAGAGGCCGTTCCAAGCGTGGTGACCGTGAAGCAGGAAAAAATGGATGAAGAGTCTGTCACCGTGAAGGAGGAGCAACCAGTCAAAATCGTGAATGAACCCCTCACAGAGGATGATCAGGAAGACCAAAAGATTTCGCTGTTGACAAGCACTAAAGTCAAAACCGAACCAGAAGACATCATCGAGGTGGAGGAGAGTAGACAATCCGAGTACACGATACCAGCTGTTGGAACAGTCCACGACACAGAACAGTCGAATGTCAAGATCCCCAATGAGGACGACGAGGAATTCTTCAAAACTGGAGTAGATGGAACTTCCCAAAACGAGAGAATCAAATATGGCAGCTTCAACTGTCCAGATGCTTCTTGCCAATTGGAGTTCAAGTACTACCGCGACATAATCATGCACTACCTGGGAGTGCACGTCACGAACCCTCCATTCACGTGCACCGTCTGTGAGCTGAAGTGCACGCACAAGACACAACTTCGCCTACACCTCAAGAAGCACATCAAGTGCGCCTTTAAGTGCCCCTTCTGTCAGCGAATTTACGGCGCTTTCCGCGACTTGAAGAATCACTTGCGAACGCACACCGGAGAACGGCCGTTTCAGTGCACCATATGCCGGCAACGGTTCAAGCAGAAGCCTGCTCTGCGGGTCCACATGCAGACGCACAACACAAACAAAGAGTACAAGTGCAGGTATTGCAACAAGGAGTTCTTCTCCTACAACGGAATGTTCTTGCATCAGAAGTCGCACATAAAAATCGAAGAGCTGCAGTGCAAGGCCTGTAAAAAGCAGTTTCCCACACAGAGTCGATTGAAGCGTCACCTCACCACTGTGTGCGGACTGATCATGCCAACGCTGTTGACCGGCAAGGATTAG
- Protein Sequence
- MNEALVNVKCLESRINCDGKVSNRVALAMEEFKKVCRTCLRETTANNLENFLLPQLTIREILEESTGLHIEPADCLPDHICNDCLKRIKTIYKFRWQCLQVDEALRALLTRIEPKPAEEPQIIPVVVGKVDNCADSTIQYDQFQVTYLDENSDATKAAEVETEGEQPEQGPPTEKKKLFRCGICLREFTFRNGLHDHIQLAHVQKKEMHCQNCGRKFRTRARLLLHKKRNCAPANSGLTLVEREPWRAVVTIKDDEIEITNFQCSICDESIELEKDFLTHLQAHWNVKTCKHCNKKVNRPSHLESHVRSHSRFRPYVCPYCSKAFSATQSLRCHLQTNNQRQAQTCRKCDIVFCSLKDYLKHYNEHILNGEIVLDENTEAKGPSPQAAHSKNSSETVEKGVEHQEEAVPSVVTVKQEKMDEESVTVKEEQPVKIVNEPLTEDDQEDQKISLLTSTKVKTEPEDIIEVEESRQSEYTIPAVGTVHDTEQSNVKIPNEDDEEFFKTGVDGTSQNERIKYGSFNCPDASCQLEFKYYRDIIMHYLGVHVTNPPFTCTVCELKCTHKTQLRLHLKKHIKCAFKCPFCQRIYGAFRDLKNHLRTHTGERPFQCTICRQRFKQKPALRVHMQTHNTNKEYKCRYCNKEFFSYNGMFLHQKSHIKIEELQCKACKKQFPTQSRLKRHLTTVCGLIMPTLLTGKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00671150;
- 90% Identity
- -
- 80% Identity
- -