Esep008735.1
Basic Information
- Insect
- Eristalinus sepulchralis
- Gene Symbol
- -
- Assembly
- GCA_944738805.1
- Location
- CALYJE010000061.1:3067144-3069393[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3 3.3e+02 2.2 1.7 1 23 226 250 226 250 0.81 2 13 0.012 1.3 9.7 3.2 1 21 256 276 256 279 0.80 3 13 4.3 4.7e+02 1.7 0.5 1 9 284 292 284 294 0.87 4 13 0.28 31 5.4 3.8 1 13 313 325 313 337 0.77 5 13 8.7e-06 0.00095 19.6 3.7 1 23 343 365 343 365 0.98 6 13 0.0031 0.34 11.6 1.1 1 23 371 393 371 393 0.95 7 13 0.00026 0.029 14.9 0.9 1 23 399 421 399 421 0.98 8 13 1.6e-05 0.0017 18.8 1.1 1 23 427 450 427 450 0.92 9 13 6e-06 0.00065 20.1 0.8 1 23 465 487 465 487 0.99 10 13 3.2e-06 0.00035 21.0 1.9 1 23 492 515 492 515 0.95 11 13 6.2e-05 0.0068 16.9 1.7 1 23 521 543 521 543 0.97 12 13 0.00022 0.024 15.2 0.3 1 23 548 570 548 570 0.97 13 13 9.3e-06 0.001 19.5 1.0 1 23 576 598 576 598 0.98
Sequence Information
- Coding Sequence
- ATGTGCAGTGTGTTTAAATTGGATTTAAATAAGTACAATATAGAAGATGTATGCAGGACGTGCGGCAAATGCGACGTGATCACGTCAGTAGGTCTAGTGAATATTTTCTCGTCAGACGAGCAAACAGAAGAAAAAAACAAACTTCTTCGTGAGTTCGATCTATGGAAGCTTAGTATTTCCGAAGACGATGGTCTCCCACAAAAAGTGTGTAAACAATGTTTTGGCAAGTTCACCCTTGTGCATAATTTTCGCAAGCAGTGCCAAAACATCCAGAACGCCTTCAAAATTCTGCTTTATGAAAAGCGACAGCTGACAAGAAGGGCCGGCAACCCAGTGAAACCGGTCCAAGTGGAGCCTAAACTAGAATTAGCTATTGCCGAGCCAAGTACCGACTTCGATTGCTTTGATGAAATACCTTTTGAAGACGCCGAGTATAAGGATGTTGAGCTGATTGAACTTCAGCCGCCCAACGTGAATGAATACAGCAAAGAAGCAGAAAAGAACAATGACATTAATGAACAGTCACAACAAAGTGAACCGGATGGCACAGGATGGGCGAATGAAGTGGTTCCAAAAGTTGAATACGCAAACGACGACTCCAGCTTAAGTTCCGATTTACTCAGTTCTGACGATGAACGCAAGCTTAACAGCAAGAGCACGGCGAAAGCGAAACAATTCAAGTGTGAATACTGCAAGAATTTCTGTTTGCAAAACCAGGAAGAACTTGACGACCACGTGAAAGAGATACACTCCACTGACACCCCCTACACATGTCCTCTGTGCACGAAAACTTTCAGTAACGCCAAGCAAAGGAATTGCCATTTCATGGTCAGTCACAAGTGGAAATCGCACGAATGTGATGTATGCCACAAAATGATCAAAGGCGGAAAGCCGGGACTGAAGAATCACAAGGACAACGTCCACAACAAGTCCAACCACGAATGCAATATCTGTCATAAGAAGTTCGAAAATATCTCGTTAAGTCGATTCAGATATCACCTACGGTGGCACGACAGCTCGAAACTGTTCTCGTGTAAGTCATGTGAGAAGACTTTCGTGACCCGGTACCACCTGGAAGAACACGAGCGAACACACACGGATGAAAAATCTTTCCTTTGCAGCATATGTGGTCTGGGACTTCGATGTAAACAGAACTTGATTTGGCACATGAAAACACACACGGGCGAGAGAACATATCAATGTAGTCAGTGCAGTAAAGCGTTCCCGACGCCGACAGCACTTGCATGTCATGTTAAAACACACAGCAGTGAGAAAAAGCACGAGTGCGAAATTTGCAATAAGCTGTTCAAGACAAAGGGCAGTTTGAAAACTCACATCGGAAACGTGCACAAAGTGGACTTCAACGAAGGCACCGTGAACTCGTCACCTCGTTACCAGTGCCAATTATGCCCGAGGAATTTCATATTCGAACGTGATCTCATCAAACACTTACGAACCCACGAGCACCGGCGGCACATATGTGATATCTGCGGTTTGTCGTACATGCAGTCGTCCCACTTAAAGAAGCACATGGAATCGGTGCACTTGAACTACAAGCCGCACGTGTGCTCCGTGTGCGGTCACGCATTTCCTTTCGAATATAATTTAAAACAGCACGAACTGACTCATAAAGAGAAAGAATTCAAGTGCATTGTTTGTGATAAGGCGTTTACATTACTTCCATCCTTGCTCTCGCATCAGCGCACTCATACCGGTGAGAAGCCCTTTGAGTGTCACCTCTGTGAAAAGGCATATGCCAACAGGGGGAATCTGAAAAGTCACGTTGAGAAGCATTTGCTGGAGAAGAAACAAAATCAAACATTTTCGCAAATCGTGTTACCCGTTGTTCCATCGTCTGTAGATATTCCAACGCCAGAAGAATTTAATTTGATGGTTCCGAACGAAGGAATCCCTCAGCACTCAGCAGAGCAACAGATGTTCACTAATCCACTATAA
- Protein Sequence
- MCSVFKLDLNKYNIEDVCRTCGKCDVITSVGLVNIFSSDEQTEEKNKLLREFDLWKLSISEDDGLPQKVCKQCFGKFTLVHNFRKQCQNIQNAFKILLYEKRQLTRRAGNPVKPVQVEPKLELAIAEPSTDFDCFDEIPFEDAEYKDVELIELQPPNVNEYSKEAEKNNDINEQSQQSEPDGTGWANEVVPKVEYANDDSSLSSDLLSSDDERKLNSKSTAKAKQFKCEYCKNFCLQNQEELDDHVKEIHSTDTPYTCPLCTKTFSNAKQRNCHFMVSHKWKSHECDVCHKMIKGGKPGLKNHKDNVHNKSNHECNICHKKFENISLSRFRYHLRWHDSSKLFSCKSCEKTFVTRYHLEEHERTHTDEKSFLCSICGLGLRCKQNLIWHMKTHTGERTYQCSQCSKAFPTPTALACHVKTHSSEKKHECEICNKLFKTKGSLKTHIGNVHKVDFNEGTVNSSPRYQCQLCPRNFIFERDLIKHLRTHEHRRHICDICGLSYMQSSHLKKHMESVHLNYKPHVCSVCGHAFPFEYNLKQHELTHKEKEFKCIVCDKAFTLLPSLLSHQRTHTGEKPFECHLCEKAYANRGNLKSHVEKHLLEKKQNQTFSQIVLPVVPSSVDIPTPEEFNLMVPNEGIPQHSAEQQMFTNPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00992065;
- 90% Identity
- iTF_00671130;
- 80% Identity
- -