Esep001101.1
Basic Information
- Insect
- Eristalinus sepulchralis
- Gene Symbol
- -
- Assembly
- GCA_944738805.1
- Location
- CALYJE010000007.1:5541828-5545054[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.2e-05 0.0023 18.4 3.5 1 23 402 424 402 424 0.98 2 11 0.0004 0.043 14.4 0.5 1 19 458 476 458 480 0.93 3 11 2.6e-05 0.0028 18.1 1.9 1 23 486 508 486 508 0.98 4 11 0.24 26 5.6 0.4 11 23 605 618 601 618 0.86 5 11 7e-05 0.0076 16.7 1.8 1 23 629 651 629 651 0.98 6 11 1e-05 0.0011 19.4 1.9 1 23 663 685 663 685 0.97 7 11 0.01 1.1 9.9 2.0 1 23 691 713 691 713 0.97 8 11 1.4e-05 0.0015 19.0 0.3 2 23 719 741 718 741 0.95 9 11 0.051 5.6 7.7 0.7 1 23 749 772 749 772 0.95 10 11 0.00082 0.089 13.4 1.0 2 23 781 803 781 803 0.93 11 11 0.0001 0.011 16.2 1.3 2 23 809 830 808 830 0.97
Sequence Information
- Coding Sequence
- ATGTCTGTCAAGCTTGACGACTCTGTTTGCCGAGTGTGTTTGAGTTCATCAGGGAACATACCAATCTTCGATGGATGCGGAAAAGATGATCAATTCCGATACTGCACCTCTCTGGAAGCCGCTAAAGACGATGGACTACCGTCAAAGTTGTGCAAGAAGTGCAACGATCACCTTAAAGTTGCCTATGACTTTCGATTTCAGGCGATCTATGCGGAAAAGTATTTCAGGAAGACAATATTTCTGCCATCACTGAAGAAGGAGGATGACGAAAGGATTGTCAGTCCCAGCGATGGGCGCAATTGTAGCGAGGAGCTTGATGAGAATATGGCAGAAATAAACATGTTGCTGGCAACGCATAATGATGCGGCAGGTGAACCAGATGAGGGTGATCACGATGACATTAATAATTCGGTGTTCTACGATGACGATGACAGTGTCGATGAAAATGAGAGGCAGGTGGAAATCATTGGTATGGAAACGTTCGAAAAGGAAAAGCGGGAGAGGAGAAGTATACAGGTGAAGGTGGAGATTGCCGGTGCCCCTGCCCCGCAAGTGACTTCGACAGTAAATAATACAGGATATATTCCAATGGTTTCATTACCAATGGAGTCTCCACAGTCTACAACCAGCAGTTGTAGCAAGCAACATTCCAATGTGTCAATGAACGGCATCCAGCAATATGCATCCAGTTCTTATTCAACACATTCTGTGCAAGATTTGCGTCCAGAGCAAGACTGTGGCAGTTCCTTGCAAAACATTGTGCCTGTTCTTAAAAATGATCCATCTGCGTATGATTATAACGCCACAGGCGTTACAGAGAACTTCGACACTTACACAGCCCCGCCACAGATGCAATATGAACAGAACATGTCTATGCACCTGCAGTACACCGTGCCGACAACAACCCACCATCCAACTATGCCTCTTCAGGACTCCGCTCCACCCACGAATACCTACGGCTACACCTACCAAACAGAGTTTCCGACATATCAAGCGCAGACAACTGAAATTAGTGTCGAACCGGTGGTGCCAGCCGGAACCCAAGAATCAGTAACACAAGTGACAGCAGTTCCGCAGACAGACATCCAAGACGCCGATAACATGACCAAGACTGATTACCAAGATAGCCAGCCCGACAAACGCCATTTGCAAAAGGAGCACGAACAGGAAGTGGGTGCAAACTTCCGCAAGGATAAGGTATCCTACATTTGTTCCATATGCAACAAGTCTCGCTGCTCGAAGTATTCCCTCGCATCACACATGAAGACGCACTCCAACGATGCTAAGGCCCGCCGAAAAGTCGTGAGGAAGAAAAAGGAGAAGTCTGACAACTCCAGTGGATCAACGACGGTAACCAATGCTCCTCTGAAGTACTCATGTAAGATTTGCCAGAAGGGCTTCCCCAACAAATGGGAACTGAGTACCCATGATGAGTCTCACGACCAAAACAAAACGTTTGAGTGTGACATCTGTCAGAGGACGTTCGAGAAGAAGTTCCAGCTGCTTTATCACTTGCAGACACACGACGGCGGTGAGGAGTTGGTCAAAGCTAAGGTGCAACCCAGCGCCGAGAAATCAGCGCAAAACAACTCTCAAGGCTTGGTGGAGAAGAATTCCACGACAAATGAAAGGAAAGCGAAGGAGAAATTGCCCCCTCGAAAACGACGGAAAAGAAAAGCAAAGGCTCAGTTGCCGAAGGACGCGTATAGCATCGAAGGGGACGGTGAAGAAGAAGACGATGAGGATAACAATGCGCCCGAGGAAGAATACAAAACAGACAAGAGCTCTGCAAAACGGGCGGAACGGACGAGAGCACAACGTGAAAATCTGAAGCGTCACATGTCAAAAGACCACGACGATGACAGGGAAGCAGATCGGATAAAATTCACCTGCGGCATATGTCACAAGTCAATGGGGACGAAGTACTCTTTGCAAGCCCACATGAAGCTCCACGAGCAATACTCTTCAGCAGACGCGGAAGTGAAATTCTCTTGCAACACGTGCACGGAGACGTTTGACACGAAGTCGGAGTACACGAAACACATGGAGCTGCACGATTCCCACAGGAATTTCCAGTGCGACATCTGTCAGGTGACTTTTGAGAAAAAGTTTAAGTTGCTCTTCCACTTGCAAACACACAAGATCGAGGATCTGCCCTGCAAGAAGTGCGGTGAAACTTTCACAATCAGAGAAAACCTCATTCAGCACATAAAGCTGCAGCACATGGATCCCCAAAACATGGACTTCCAATGCCCACACTGCAATGCTGGGCAATACGACACTCGGGATCTTAAGCTGCACATGCTGAACGTCCACGAAGTGAACATGGGAGGCTTAAATTCTTGCGACCTGTGTGGCGAGAGCTACTCCACAGCAGCCAAGTACTACAAGCATATGCACGAGAAGCACGATATAATCAGCAAGACCTGCAACGAGTGCGACAAGTACTTCGATTCGAGAAAAGCTTTTGACAAGCACATATTAACCCATTACATGTAA
- Protein Sequence
- MSVKLDDSVCRVCLSSSGNIPIFDGCGKDDQFRYCTSLEAAKDDGLPSKLCKKCNDHLKVAYDFRFQAIYAEKYFRKTIFLPSLKKEDDERIVSPSDGRNCSEELDENMAEINMLLATHNDAAGEPDEGDHDDINNSVFYDDDDSVDENERQVEIIGMETFEKEKRERRSIQVKVEIAGAPAPQVTSTVNNTGYIPMVSLPMESPQSTTSSCSKQHSNVSMNGIQQYASSSYSTHSVQDLRPEQDCGSSLQNIVPVLKNDPSAYDYNATGVTENFDTYTAPPQMQYEQNMSMHLQYTVPTTTHHPTMPLQDSAPPTNTYGYTYQTEFPTYQAQTTEISVEPVVPAGTQESVTQVTAVPQTDIQDADNMTKTDYQDSQPDKRHLQKEHEQEVGANFRKDKVSYICSICNKSRCSKYSLASHMKTHSNDAKARRKVVRKKKEKSDNSSGSTTVTNAPLKYSCKICQKGFPNKWELSTHDESHDQNKTFECDICQRTFEKKFQLLYHLQTHDGGEELVKAKVQPSAEKSAQNNSQGLVEKNSTTNERKAKEKLPPRKRRKRKAKAQLPKDAYSIEGDGEEEDDEDNNAPEEEYKTDKSSAKRAERTRAQRENLKRHMSKDHDDDREADRIKFTCGICHKSMGTKYSLQAHMKLHEQYSSADAEVKFSCNTCTETFDTKSEYTKHMELHDSHRNFQCDICQVTFEKKFKLLFHLQTHKIEDLPCKKCGETFTIRENLIQHIKLQHMDPQNMDFQCPHCNAGQYDTRDLKLHMLNVHEVNMGGLNSCDLCGESYSTAAKYYKHMHEKHDIISKTCNECDKYFDSRKAFDKHILTHYM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -