Esep007885.1
Basic Information
- Insect
- Eristalinus sepulchralis
- Gene Symbol
- -
- Assembly
- GCA_944738805.1
- Location
- CALYJE010000055.1:2630214-2633483[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.018 1.9 9.2 0.5 3 23 169 190 167 190 0.94 2 19 0.0026 0.29 11.8 4.4 2 19 233 250 232 253 0.92 3 19 0.59 64 4.4 2.2 3 23 265 285 264 285 0.88 4 19 0.022 2.4 8.9 0.1 3 23 294 315 293 315 0.95 5 19 0.00039 0.042 14.4 2.6 1 23 321 343 321 343 0.97 6 19 0.34 37 5.2 6.7 1 23 349 371 349 372 0.95 7 19 6.3e-06 0.00069 20.0 2.2 1 23 378 401 378 402 0.97 8 19 1.4 1.5e+02 3.2 0.0 1 20 410 429 410 431 0.78 9 19 0.0043 0.47 11.1 0.3 1 23 448 470 448 470 0.93 10 19 0.058 6.4 7.6 0.8 1 23 475 497 475 497 0.98 11 19 0.42 45 4.9 0.2 1 23 513 537 513 537 0.93 12 19 5.8e-07 6.3e-05 23.3 1.2 1 23 543 565 543 565 0.96 13 19 0.021 2.3 8.9 4.3 1 23 571 594 571 594 0.97 14 19 0.0026 0.28 11.8 0.2 2 23 600 622 599 622 0.95 15 19 0.00015 0.017 15.7 0.1 2 23 626 648 625 648 0.96 16 19 0.00057 0.062 13.9 1.1 1 23 654 677 654 677 0.95 17 19 0.0024 0.26 11.9 2.8 1 23 683 705 683 705 0.98 18 19 0.00013 0.014 15.9 4.2 1 23 711 733 711 733 0.98 19 19 0.00014 0.015 15.8 0.4 2 23 740 764 739 764 0.93
Sequence Information
- Coding Sequence
- ATGGATTTAAATTGCCTACGATGTAAGACAGCGCTTTCGGACGATTATCAATTGATTTTTGATGAAACTGGAGTTGAGTTGCAGCTGGATAAACTTCTTGCTGATTACTTTGAAATTCACATAATACGAGATCCCGCTTCAGTACAAGCACTATGTGAAGAGTGCGTTAATAAACTAATAGAGCTATACGACTTAACAGAAAAAAATCAGGAAAGTCGAGCCTCTGATGAAAGTAACGAACCAATAGAGTTACCAGTCATAGAAGAACAAGAGGAAGCTGCTGAGAACGGCAATCCCCTTGACCAAAACATCAAGGAGGTAATAAAATCGGCGGAATGCAGCGATGATGAAGAATTTATGGGTTTCAACGAAGAGGACGATGATAATTTACAATTTGAGAATGTTCAGTATCTGGATGAACTGGAGAGTATTAACACCCAAGAATACGTACGCGGTGTGATCAAAAGTGAACTAGAAGAGATTATTTTCGACAGAAAAACGATTTGCAAGATATGCAACGAAGTGTTAAAGAGTCACACAGCATTGCTGATGCATGTCTTGTCTAATCATGAGTCAGATACCAAGACATATCCCTGTATCATTTGTGGGTCCGAAAATGAATTCAATTCTCTCCAAGACTTAGCTCTACATGTTGTTATGAAACACTATGACCTAGATGAAATCAACATTTATTGCACATGCCCTGAATGCGGAAAGAGGTTTTCCAACTTTATCGAGTACAACAAGCACTCATGTTACAAGATGAGATTTGAAAATCGGCTTCTTCAAGATTGCGCTGTTTGCTCGAAGAGGTTTTCATCTAATAAGAGATATCGGTTCCACTTGCAATTTCATCTTGAAAAACGAAGACCAAAGGCTTGTTTCATTTGTGATATACTCTTTTCTGATGAAAATGACTTCTTCGAGCACATTATGTATGCTCACGGGAAGCAGAATGGATATATATGCAAAAAGTGCGATCGTGTCTGCACTTCGAAGGAGCTATATGACAACCACATTAAATTGCACAAAGCAGTTCGATCATATCATTGCAAGTACTGTTCAAAATCGTACCTGTACAAGCAAATGCTGGATAATCATATTACGCGACATCATCTTCAGAAGGATGACTTTAAGTGCACGATTTGCGACCGGGCTCTGGCTAGTAAACATCTTCTCACCAGGCACATGCAAGTGGTTCATCATGAGGAAACCGAAGGGTGTGTTCATACTTGTACAAAATGCGGACTAGTTGGTATATCCGAAGAGGACGTTGAAGGTCACGTTAAGGGCGACTCCTGTGTGGATGCAAACGTTCGCAAACAGTCTCTGAAGATTGTCTTCGCTTGTGAGTTTTGTGAACTTGCGTTTAATTCAGTGCGAAATTTGAAGACTCATCGCGTGGAACATACGAATAAACTATACGTGTGCTGGATATGCAAAAGTGAATACCAAGAATATAAGAAGCTCAAAACTCACCTCATCACTCACACAAAACACGATCCAATTCAAAAGACTTTCCCCGTAGACAGGCATTATGTTTGCGATTATGAGTCATGCGATCAATCCTACCTCACTTGGCCAACTTTAACAGCTCACAAAGGTAAACATGCCACTGAGACGAAATTCACGTGCGAGGTCTGCGACAAAGTGTTTAGAACTCGTTCTCAACTGAATACTCATTCAAAGGCACACGAAAATAACGAAGAATACCCGTGCCAGTTCTGTTCGAGAGTTTGTCACTCACAAATGTCTCTGACAGTGCATATCTCTCGGAAGCACAACACCAATTGTAAGACGTGTCCAACATGCAAGACAACTTACACCACAGACGAGGCACTGGCGGAACACATTGACATGAATCACGTCAAGGTAAAATGCGAAGCTTGTGGGAAAATGGTCAAAAATAAGCGAAACCTTGAAATACACGTCCAAATGGTTCACAACAAGATGAAGAGATTCTTTTGCAAAAGCTGCGAGAAAGGATACTACAACAAAAGTGATCTAAGGATCCATGAAACAACGGCACATTCTGAAGTGCAAAAATTTCAGTGTGAGCACTGTGATTTTAGCACAAGCTACGAGACATCTTTCAAAGCACACGCCCTTAAGCATGCGGCCAAGAAACCCTTCAAGTGTGAGGAATGCTCGAAAGAGTTCACAAGGAAGGCATGTTTCAAATTGCATGTACTTCGGCACTCCAATATAAAACCGTTTCTCTGTCCCGTATTGGATTGCGGCAAATGCTTTGTATCTCAGGGAATTCTCAACTCGCACATGCGGGATAATCATGCGGATGTCGATATTGTGGTTAAAAAGGAATTTCGTTCAGGGAAACGGAAACACCGTGAAGCAAAAGGTGCGCAATCCATTGATAATCGCATGAAGTACATAATAATGGATGTGGATCCAAATATGACACCGATTGAGGTTGAGTGTGTTGACAATGGAAGCGAAATCGTTTTTGCAGAATCCGGTGACGGACAGGAGATTGTACTCGAATACGATGACGAGGATAGTGATTTAATTATGGACCTTAATCAAGCTGAATTTAGTGAATTTAGTATGAATTAA
- Protein Sequence
- MDLNCLRCKTALSDDYQLIFDETGVELQLDKLLADYFEIHIIRDPASVQALCEECVNKLIELYDLTEKNQESRASDESNEPIELPVIEEQEEAAENGNPLDQNIKEVIKSAECSDDEEFMGFNEEDDDNLQFENVQYLDELESINTQEYVRGVIKSELEEIIFDRKTICKICNEVLKSHTALLMHVLSNHESDTKTYPCIICGSENEFNSLQDLALHVVMKHYDLDEINIYCTCPECGKRFSNFIEYNKHSCYKMRFENRLLQDCAVCSKRFSSNKRYRFHLQFHLEKRRPKACFICDILFSDENDFFEHIMYAHGKQNGYICKKCDRVCTSKELYDNHIKLHKAVRSYHCKYCSKSYLYKQMLDNHITRHHLQKDDFKCTICDRALASKHLLTRHMQVVHHEETEGCVHTCTKCGLVGISEEDVEGHVKGDSCVDANVRKQSLKIVFACEFCELAFNSVRNLKTHRVEHTNKLYVCWICKSEYQEYKKLKTHLITHTKHDPIQKTFPVDRHYVCDYESCDQSYLTWPTLTAHKGKHATETKFTCEVCDKVFRTRSQLNTHSKAHENNEEYPCQFCSRVCHSQMSLTVHISRKHNTNCKTCPTCKTTYTTDEALAEHIDMNHVKVKCEACGKMVKNKRNLEIHVQMVHNKMKRFFCKSCEKGYYNKSDLRIHETTAHSEVQKFQCEHCDFSTSYETSFKAHALKHAAKKPFKCEECSKEFTRKACFKLHVLRHSNIKPFLCPVLDCGKCFVSQGILNSHMRDNHADVDIVVKKEFRSGKRKHREAKGAQSIDNRMKYIIMDVDPNMTPIEVECVDNGSEIVFAESGDGQEIVLEYDDEDSDLIMDLNQAEFSEFSMN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00671101;
- 90% Identity
- -
- 80% Identity
- -