Esep004750.1
Basic Information
- Insect
- Eristalinus sepulchralis
- Gene Symbol
- -
- Assembly
- GCA_944738805.1
- Location
- CALYJE010000030.1:701628-704134[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.4 1.6e+02 3.2 0.3 1 12 16 27 16 30 0.90 2 13 0.0012 0.13 12.9 0.2 1 23 341 364 341 364 0.94 3 13 0.00066 0.071 13.7 6.0 1 23 373 395 373 395 0.98 4 13 1.8e-05 0.0019 18.6 3.2 1 23 402 424 402 424 0.98 5 13 1.1e-06 0.00012 22.5 0.5 1 23 430 452 430 452 0.99 6 13 7.1e-05 0.0077 16.7 1.3 1 23 459 481 459 481 0.97 7 13 4.7e-05 0.0051 17.3 0.4 1 23 487 509 487 509 0.97 8 13 5.3e-05 0.0058 17.1 0.3 1 23 515 537 515 537 0.98 9 13 1.2e-05 0.0013 19.1 0.5 1 23 543 566 543 566 0.95 10 13 5.7e-05 0.0062 17.0 3.3 1 23 572 595 572 595 0.97 11 13 8.2e-07 9e-05 22.8 2.7 1 23 601 623 601 623 0.98 12 13 0.00025 0.027 15.0 0.4 1 23 629 651 629 651 0.96 13 13 0.0004 0.044 14.3 0.3 1 22 657 678 657 681 0.92
Sequence Information
- Coding Sequence
- ATGACGGAAATCATTGAGCGATTGGCGACCTACACGACAGAAATCTTCAAATGCTTCCTGTGTGATCGTTTGTTCTCTGACGGCGACGAACCATGGCATTTATTCGAGAAACGGATTCAAGAGAATGGTCAACCAGACTGCCCTCTCGCCGTCATTCTGTCATCTGCGCTCGGCAAAGACTTGGATCATGAAAACGTTCATTCGAAGCTGCTTTGCGACGAGTGCAACATTGTTCTGCTAGAGTACGAGAGTCTGGAGAAGCGTTTCTATCAGTTCCGCCTGAAAATCCTCACCGACTATAACAACACGGCGAAGGGGAATGGCTTGGATCCGATTTGGTTCGAGATTACCGAGGTGGATGATGCCCAGTCCATCGAGAACAAGGGGGGCATGATGAATGTGATGGAAGTGAAAACCGAACACGAGGTGGATGAGAGCATTCCGATGCTGGATGCGCAGGAGATATCCAATTACGTGGTGGAAGAGCAAGAACAGGAGTCGGAGTACAAGCCAAAAGTGGTGGAGGGCTTCAAGCAGGAGGGTGTTGTTGAGACGGACGGGGTTTTGATCGAGGACGACGACGACGACGACGTGGAGGAGGTGGTCGAGGAACAGCAGCAGAACGACCTGTTCCTCGTGCAAAATATTAAGGTTCTCACTGAAGAAATACCCTACGAACAAATCATCGAACAAAACTCGGTCATCAGCTACGACAACAGCGTGGACGCTGTCGAATCCGCCATCGACTACACTAGCAGCGTTGAAGGTGAGTCAGACGCATCCCGCAACCCACCATCACTGACGCACTCCGTTCCAGACAAGTCGCAGACCCTGCTGAGCGACGACGCGACAAAGCCGCCGAAGCAAAGGCGTCCTGGTCGGCCGGGTAAGCGGGACTCGGTCACAATCGACTTTGAGTTCACCGGAAGCAGCTACATCTGCCCCCTGTGCCCAGAGAGAGCCGAGTATGAGCCGATGCTGTTCGCGGGCCACTTGAAGGGCGTTCACAACTACAAGTactacgtgtgcgacgtctgctacaagggcttcagcaagcggaacgaaatcaacgaccacatggacgagatgcacggagtcgggacgctggagggcgagttcaagtgcgagacctgcacgcgagtgttcagcaaccaccgactgtttcgaacccacaagcgcctgcactactgcacgacgaagcaccacgagtgcccggagtgccacaagaagtacagttccaagaacctgctggacgagcacatgaacatgcacacgggcaaacggccgtacaaatgcggctcctgcgggaaggacttcgcatcgaagtacaccctgcaggcgcacctgaagatccacacgaagcggccgcggccgtacagctgcgatgagtgcgacaagtcgttcctgaaccagcagaacctgctgcagcacaagaaactgcactcggggctgaagtcgttcgtgtgcgacgtttgccagaaggccttcggcacgcagcacaacctggacgtccacaaaatcgtgcactctgggaacaagccgtttatctgccgcacgtgcgggaagggcttcgcccggcgggctgaaatccgggaccacgagcggacgcacaccggagagcgcccctttaagtgcgacctctgcccaatggccttcgcacaaaggtccaatcttatgacgcacaaaaaggcgacgcatctgaacgacaagaagcacaagtgcaacgtctgcgagaggtccttcaagcgacgccggctgctggagtaccacacgcagtcggcgcacacaggagagcggccccacaagtgcgacgtgtgcggagcaacgttcgtctacccggagcacttcaagaagcacatgcggatccacagcggcgtgaagccgtacgcctgcgaggtctgcggcaagctgttcaacagcagggacaacaggaacgcgcacaggttcatccacagcgagaagaagccgtacgagtgcctcgagtgcgggatgggcttcatgcggaagccgctgttgctgtcgcacatgaagCAGACGAAGCACGTGAACGACACGATCATAGTCAACCAGCCGCAGATAACCCACAAGGGTGTCGATGACGCCGAGAAGGAACTCATTGAAGAGGAGCTTGGTCTGGGGACGGTTGTGACCAGCGCCGCCTACGACGAGGTTGTCACCTCGGACACGATTCTGGTTGAGGATGGCGACGGGCAGTACATCAAGGACGAGGACGGGGAGGTGAAGTACCTGCAGTTCACCGAAATGGACAAGGATGGACAGGCAACCTTCACCTGGGTCGACATCGGCGAGGACAAGGACGACAACTAG
- Protein Sequence
- MTEIIERLATYTTEIFKCFLCDRLFSDGDEPWHLFEKRIQENGQPDCPLAVILSSALGKDLDHENVHSKLLCDECNIVLLEYESLEKRFYQFRLKILTDYNNTAKGNGLDPIWFEITEVDDAQSIENKGGMMNVMEVKTEHEVDESIPMLDAQEISNYVVEEQEQESEYKPKVVEGFKQEGVVETDGVLIEDDDDDDVEEVVEEQQQNDLFLVQNIKVLTEEIPYEQIIEQNSVISYDNSVDAVESAIDYTSSVEGESDASRNPPSLTHSVPDKSQTLLSDDATKPPKQRRPGRPGKRDSVTIDFEFTGSSYICPLCPERAEYEPMLFAGHLKGVHNYKYYVCDVCYKGFSKRNEINDHMDEMHGVGTLEGEFKCETCTRVFSNHRLFRTHKRLHYCTTKHHECPECHKKYSSKNLLDEHMNMHTGKRPYKCGSCGKDFASKYTLQAHLKIHTKRPRPYSCDECDKSFLNQQNLLQHKKLHSGLKSFVCDVCQKAFGTQHNLDVHKIVHSGNKPFICRTCGKGFARRAEIRDHERTHTGERPFKCDLCPMAFAQRSNLMTHKKATHLNDKKHKCNVCERSFKRRRLLEYHTQSAHTGERPHKCDVCGATFVYPEHFKKHMRIHSGVKPYACEVCGKLFNSRDNRNAHRFIHSEKKPYECLECGMGFMRKPLLLSHMKQTKHVNDTIIVNQPQITHKGVDDAEKELIEEELGLGTVVTSAAYDEVVTSDTILVEDGDGQYIKDEDGEVKYLQFTEMDKDGQATFTWVDIGEDKDDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00672985;
- 90% Identity
- iTF_00671088;
- 80% Identity
- -