Eaen000438.1
Basic Information
- Insect
- Eristalinus aeneus
- Gene Symbol
- -
- Assembly
- GCA_955652365.1
- Location
- OY019130.1:6488717-6492178[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.5e-05 0.0036 18.3 2.2 1 23 91 114 91 114 0.95 2 20 4.5 6.5e+02 1.8 0.1 1 14 121 134 121 137 0.90 3 20 0.049 7.1 8.0 1.7 1 23 186 209 186 209 0.94 4 20 0.3 43 5.5 0.4 1 20 218 237 218 239 0.94 5 20 0.01 1.5 10.1 3.3 1 20 247 266 247 268 0.94 6 20 0.0012 0.17 13.1 3.4 2 23 279 300 278 300 0.98 7 20 1e-06 0.00014 22.7 0.7 1 23 307 329 307 329 0.98 8 20 0.27 39 5.7 3.1 2 23 360 381 359 381 0.97 9 20 0.0069 0.99 10.7 3.6 1 23 463 486 463 486 0.97 10 20 0.0038 0.55 11.5 1.5 1 23 523 546 523 546 0.94 11 20 5.1e-06 0.00073 20.5 1.0 1 23 585 607 585 607 0.98 12 20 3.1e-05 0.0045 18.0 0.3 2 23 631 653 631 653 0.96 13 20 0.00041 0.059 14.5 2.1 1 23 694 717 694 717 0.97 14 20 0.071 10 7.5 1.7 1 22 724 745 724 745 0.96 15 20 0.043 6.2 8.2 0.5 1 23 754 777 754 777 0.94 16 20 0.0015 0.22 12.7 2.0 1 19 783 801 783 802 0.97 17 20 2.6e-05 0.0037 18.3 1.4 1 23 813 835 813 835 0.98 18 20 8.3e-06 0.0012 19.8 0.3 2 23 855 876 854 876 0.95 19 20 0.00027 0.039 15.1 4.3 1 23 882 904 882 904 0.99 20 20 8.1e-08 1.2e-05 26.2 3.6 1 23 910 932 910 932 0.98
Sequence Information
- Coding Sequence
- ATGATATGTAGCTTGGAGGGATTTACCAGTGTTCGTGGCCTTAGACAGCACATCACTCTTcataacaatttaaaattgGCTGAAGAACTAACTGGCAGCCTTGTGGTGGAAAGATTCTTCCCCAACACGGAATTGAATGATGTGCAGTCGGCTTTGAGGGAAGAAATGGAGAAGAACGAATTCGGAAAGCTTCATTCAATAGTCAATGGCCATAGTTATGAAATGGGAATAAGTGACTCTGACGATAGTGATCCAGAATGCCAAAATCGCTACAGCTGTGAGATATGCAGCGAGTCGTTTAGCAGAAAACACAAACTCATGACACACCAGGCGTATGAGCACTCATTCGAAGATTGTCCATATGAGTGCAGGGCTTGCAAATTAAGATTTACTTCAGCCGATGAAGCCGAGGTGGCGGAGGCTATTAAAAGACGTTTTGAAGAACAAAAGCTTAGTCAACTTTATGTTGGGATAAATAAATATGGTCTCGAAATAGCCTTGAGTGATTCAGACAGTGGAGACGAACTGCAATCGAATTGCGATTCCTCAAAGACATTCACTTGCGAGGTGTGCCACGTAAAATTCCCTCGAATGCATTCGATATTTGAACACCAAGTTGTGGAACATGATGATGTGAGTATAAATACCTCGTACACATGTGATAACTGCGACGATCAATTTGTCTGCAAAGAACTTCTGCAAAGACATTTGGCAGTCGGTTGTTTAAGTTCAAATCGTTTTACCTGTACCAAGTGTGGCTGTAAGTTTGTTTTTGAGCAAAACTTGTCAGCTCATGTTTGCTTGCCCAATGACAAAAGTTCTGAAGATGCCAAACAGTGCGAGATTTGTGGAAAGAAGTTTAATTGGTTGAAGGACTTGCACAGACACAAACGTAGCCACGTCCCAGATGAGAAGAAGTTCGAATGCCTAGTGTGTGGAAGAAAATTCAACAGAAAGGACAACATGCGAGCGCACCTAAAAGTGCACAATGTCGACTATAAGATGCGATCGAAAGCTTTGCTTAAGTGGGAGCAACAAGATGAGAACATGTGCCGGCCACATGGTGAGAAAATTATACAGTGCAAAATTTGTCACACAATTCACAATTCCATTCGAGATTTGAACACACATTTGATGACTCATAGTGATTGTAATACCTTAAAGCAGAAGGATACAGAAGTGAAAGAAATATCAATGATCCTCTACAACAAGCCAATGGATCTACGAAGTCTGTCTAAAGCAATCTGTAGTGATCTCTCGAATAACAAGCATTCTCGCTTCTATTCGATTACCAACGAAGTGGGATATGAGTTGAGTTTGTTTGATTCAGAAACTGCCACCGATCTTGAAGCAGATGAAGAGGAAGATAGCGACACACGCAAAGGCTACACTTGCATGCTCTGCAGCAAAAAGTTTAACAGAAAATTTAAGATCTTcgaacaccagaggcaggagCATTCCTGGAGTGAACTTCCGCTAGAGTGCTCGCTATGTTCGGCAAAGTTTGTTTGTGAAGGCATATACGACCTTCATTTGAAGTACGAATGCGAAAATGCTGAGAAACAGTACAAGTGCAAACAGTGTCCATTGAAGTTCGTTTGGAAGGAGAATTTAAAAAACCACGAAAAGTTTATGCACGATAAAAATCTGGTATTTGCCAAGAAACATCACTGCGGCACATGCGATAGAAGTTTTCTTTGGCACAAGGATTTACTGAGACACAAAAAAGGCCATCGTATGGAGGAAGAAAAGTTCGAGTGCACATGGTGCTTTCGTATTTTTATGCGAAGGGATAATCTTAAGGTTCATATGAAAGTTCATAAAAATGCAACTCATCTTCTGCTGCCAGACATCTACTACTTGGCACGCCCGAACAGCACCAAAGTAGCTGAATGCAAGTATTGTAATCAAAAGTATACTACTGCCGGCGATTTGCTTCAGCACATTCGTAACGTTCACTTAAGCTTTCAACAGCAGCAGAGTGTACCGGATCCGAGTAGCTATTCAATAACGAATGCTTTAGGCTACGAGATGGATATTGAGGATTCGGAAACCGAAAGAGAAGAGCCGATTGAGAAGTACTCCTGTGAACTTTGTGAGACGCGTTTTAATCGTCGCTTCAAATTGTTGCAGCATCAGCAATCTCTTCACTATTCTGATAATATACCACATAAATGTGATTACTGTAACTTCAAGTGCGTTTCGGAACCTGTACTTGCGTATCATATGCGTACTCAGTGCATGAACTCCGTCAAGCAATTTCGTTGTAGCAAGTGCACCATGCGATTCATGTGGCGTGAGAACCTAGAAAATCACGAAAGTGTCATCCATGATAGTCCACGAACACATACTTGCGAAGTTTGTAAGCGGGATTTTGCCACGCAACACGATTTGAAGAACCATAACGATTGCAAACCCCCAGATGAAGTAAAATTATTTGAGTGTGATATGTGTGATCGGAAGTACAATCGTAAAGACCGACTGATGAAACATGTTAAGGTTCACAATGAAAAGAACAAGGAACAACGAATGAAGAATGTCACATCGACAGACAAGAAGTTCTTGTGCGCCTTTTGTGGGAAAGAAGTTTCAAGCTCGTCGAATCTAGTTATTCATATGCGGCGACATACGGGTGAGAAGCCGTTTAAATGCGAATTCTGCAACAAGGGTTTCCCGCGATCTTCGGATTTGAGTTGTCACAGACGTACACATACCGGAGAAAAACCGCATAAGTGCACGGAGTGTGACAAGGCGTTTTCACGCTCGTACAAGTTACAAACGCATATGCGTATACATTCTGGGGAAAGACCTTATAAATACACACTGGTGAGCGTCCTTACATTTGTGAAACATGCGGTGAGCGATTCATACAAGGAACAGCGTTGA
- Protein Sequence
- MICSLEGFTSVRGLRQHITLHNNLKLAEELTGSLVVERFFPNTELNDVQSALREEMEKNEFGKLHSIVNGHSYEMGISDSDDSDPECQNRYSCEICSESFSRKHKLMTHQAYEHSFEDCPYECRACKLRFTSADEAEVAEAIKRRFEEQKLSQLYVGINKYGLEIALSDSDSGDELQSNCDSSKTFTCEVCHVKFPRMHSIFEHQVVEHDDVSINTSYTCDNCDDQFVCKELLQRHLAVGCLSSNRFTCTKCGCKFVFEQNLSAHVCLPNDKSSEDAKQCEICGKKFNWLKDLHRHKRSHVPDEKKFECLVCGRKFNRKDNMRAHLKVHNVDYKMRSKALLKWEQQDENMCRPHGEKIIQCKICHTIHNSIRDLNTHLMTHSDCNTLKQKDTEVKEISMILYNKPMDLRSLSKAICSDLSNNKHSRFYSITNEVGYELSLFDSETATDLEADEEEDSDTRKGYTCMLCSKKFNRKFKIFEHQRQEHSWSELPLECSLCSAKFVCEGIYDLHLKYECENAEKQYKCKQCPLKFVWKENLKNHEKFMHDKNLVFAKKHHCGTCDRSFLWHKDLLRHKKGHRMEEEKFECTWCFRIFMRRDNLKVHMKVHKNATHLLLPDIYYLARPNSTKVAECKYCNQKYTTAGDLLQHIRNVHLSFQQQQSVPDPSSYSITNALGYEMDIEDSETEREEPIEKYSCELCETRFNRRFKLLQHQQSLHYSDNIPHKCDYCNFKCVSEPVLAYHMRTQCMNSVKQFRCSKCTMRFMWRENLENHESVIHDSPRTHTCEVCKRDFATQHDLKNHNDCKPPDEVKLFECDMCDRKYNRKDRLMKHVKVHNEKNKEQRMKNVTSTDKKFLCAFCGKEVSSSSNLVIHMRRHTGEKPFKCEFCNKGFPRSSDLSCHRRTHTGEKPHKCTECDKAFSRSYKLQTHMRIHSGERPYKYTLVSVLTFVKHAVSDSYKEQR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -