Elan010120.1
Basic Information
- Insect
- Eriosoma lanigerum
- Gene Symbol
- ZNF280A
- Assembly
- GCA_013282895.1
- Location
- scaffold:62869735-62877283[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.4 53 5.2 0.6 2 12 54 64 53 66 0.91 2 14 5.5e-05 0.0074 17.3 3.8 2 23 227 249 226 249 0.96 3 14 2.1 2.8e+02 2.9 3.1 1 23 255 277 255 277 0.94 4 14 0.64 86 4.5 4.3 1 23 283 306 283 306 0.94 5 14 7.6e-05 0.01 16.9 2.9 1 23 311 334 311 334 0.95 6 14 0.00011 0.014 16.4 1.3 1 23 342 365 342 365 0.95 7 14 4.5 6e+02 1.9 6.8 1 23 647 670 647 670 0.96 8 14 0.00011 0.014 16.4 1.3 1 23 678 701 678 701 0.95 9 14 0.36 49 5.3 1.1 2 19 1243 1260 1242 1265 0.85 10 14 0.029 3.9 8.7 1.7 2 23 1273 1295 1272 1295 0.92 11 14 0.00062 0.082 14.0 0.2 3 23 1303 1323 1302 1323 0.97 12 14 6.4 8.5e+02 1.4 0.5 1 20 1329 1348 1329 1350 0.89 13 14 0.0043 0.57 11.4 0.6 1 23 1354 1377 1354 1377 0.97 14 14 0.001 0.14 13.3 0.3 1 21 1384 1404 1384 1405 0.92
Sequence Information
- Coding Sequence
- ATGGTTGACAACATAGTATTCCCATTAGATAATGATCTTAGTAATACGAATATTAACCAGTACAAGTTGGAAAAATACGTAAAAACAACATCTACAATTCTTAATTGTAAGCATTTGACTGTGTCAACGAACTATAACAACAATCAAACGAATATAATAACATGCGAACATTGTGGTACTCATTTTAAAACGATAACCATATCATTAAACAAGGAAACACCATCTTCAGATTTACTAGAAAAACATATTACACAGCAGAATATTTGTTCAAATGAAGCCTCGGGATTACAAATGACCATAAATAATAAATCGATACCTAACATACCAATTAGTGTTAAAAAGTTTATCCCAATTAAAAGTATAGACACACCTTCACTGTCAGATATACCAAATAAGCAACACTACTCTACTAAAAAGGCAATGATGGACCCAGATAAATTGAATATAGTTGATAGTTACTTTGAAAATTGTGAAAATCGGAGTAGTATCAATGAAGATCAAACAATCATAGAAGATAAGTTATTATCAAAAAAGGGGAAAGAACAAAATCAAGTTCCTAGAAATCAATACATTCCCCAAACTATAAATATTGATAAGCCTAAAGTTTCAACATGGCTAGAAATATGCAATCAACCAACAGTAACAAATAGCGATGAAAATAATTTGCTTAAGAATACTACATGCAACTACTGTAATAAGTCTTACAAACATATAAAATCCTTAAAAAATCACATCCGAAATATACACAATTCAATATTACCATATCATTGTCACTTATGTGATAAAAGACAACCTTCCAAAAAAGCTGCATTAGTCCACTATCAAATGCATATGAAATTAGATTGCCATCCATGTAAATGTTGTAAAATGGTATTTTTTAATTCGTCTATTTTGCAAAAACACATGATTAAGGAACATGGAATGTTTCTTCACCAATGCAACCAGTGTGAAAAGTCATACAAATCTGCAAGGACATTGAAGCAGCATATGATAGAAAAGCACAATAATATGATAAACAAACCATTTAAATGCACCAAGTGTGAAATGTCATACAATACAAATGAAAACCTGCAATCACATGAAAACAATGATCATCCACTGAATGCTCTTAATTCTTTTCAAAACAATATATGTCCAAAACAAATTACAAACTTACTATCAACAACACACAAACAAGAAGTAAAGAGTGTTAATATTGAGTTGCAACAATCTGATATTGAATATGAAAATCTATATTTAACCCAAGAAATATTGAAAAGAAACATGCAACACAATTATGAATTTCCAGAATATAAATTAAAAAGCCATATGCAATCGATACCCGGACTAGTCTTAAACAAAACTGGTATTAACTTGCAACCATCTAATACTATAACCAAACACAATCAATGTTTGCCTGAAGGTGAATTAATAAGCCACATTCAAGAAAGTCCCAGACAAGAATTAAAGGACACTAATATTGATTTGCAACCATTGAAAAATGAATTAAAAAGCCACATTCAAGCAAGTCCTAGACAAGAATTAAAAAACAATGAAATTGATTTACAACTATCTTATAATATTACCGAAGACAATCATAATTTGTACCAAAATGAACTAAAAAGCCATATTCAATCGACTGCTAAAGATGTAATAAATAACACAAATATTGATTTGCAACAATCTAATATTGAAAATGAAAATGAATTTTTGCACAAAGATGAATCAAAAAGCTACATTCAAGCAACTTCCAATCTAGACATAAAGAACATTAATATTGTTTTTGAACCATCGGAAAGTATAACTAGTGGCAATCAATTCTTGCCTAAAAATAAATTAAAAAGCTACAATCAAGCAAGTCCCAGATTAGAATTAAAAAATAGTATTGATTTGCAACTATCTAATAATATTATCAAAGAAAATCAAGGTTTGAAACTTAAACATGGAAAGTTACTATACCACCAATGCAACCAATGTGAAAAATTATACAAATGTGCAAGAAGTTTGAAGCAGCATAAGAAAATAAAGCACAATGATACGACAAACATACCTTTCAAATGTACCAAGTGTGAAATGTCATATAATACCAATGAAAACCTGCAATCACATGAAAACAATGATCATCCACTAAATGCAAGTATTCCTTTTCAAAGCAATATATGTCAAAAACAAACTACTAACTTATTATCAACAACATCCAGACAAGAAATAAAGAACACTAATATTGAATTGCAAAATAATATTGAAAATGAAAATCTAGAACTGTCAAAAGAAAACTTGAAAAGACACATGCCAGACATTCATGGTTTGCTTAAAAATAAAGTTAAAAGACATATGCAATCAACTCCCGGAGAAGAAATAAAGAACACTAATATTGATTCGCAACCATCTGAAAGTATAACTAGTGACATTCATTGCTTGCCTGAATATGAATTAAAAAGTCACATTCAAGCAAGTCCCAGACAAGAATTAAAAAACAATGAAATCAATTTGCATCTATTTAATTATATACCCAAAGACAATCAACATTTCCACAAAGATGAACTGAAAATCCATATTCAATCATCTGCCAAAGATGTAATAAATTACACTAATATTGATTTGCAACAATCTAATATTGAAAATGAAAATGAATATTTACACACAGTTAAATCAAATAGCTACTTTCAAGCAATTCCCAACCAAGAATTAAATAATACTAATATTGATTTGCAACCTTATGAAAGTATAATTAATGACGATCAGTGCTTGCTTGAAGACAAATTAAAAAGCCATGTTCAAGCAAGTCCCAGACAAGAATTAAAAAACAATGAAATTGATTTGCATCTATTTAATTATATAACTAAAGACAATCAACGTTTCCACAAAGATGAACTGAAAATCCATATTCAATCAACTGCCAAAGATACAATTAATTACACTAATATTGATTTACAACAATCTAATATTGAAAATGAAAATGAATATTTACACACAGTTGAATCAAAAAGCTACTTTCAAGTAACTCCCCACCAAGAATTAAATAATACTAATATTGATTTGCAACCTTATGAAAATATAATTAATGACGATCAATACTTGCTTGAAGGCGAATTAAAAAGCCATGTTCAAGCAAGTCCCAGACAAGAATTAAAAAACAATGAAATTGATTTGCAACTGTCTAATAATATAACGATAGATAATCAAGGTTTACCTGAGAATCGATTAAAATGTCATATGCAAGTAACTCCCATGCATGAAACAAATAACTCCAATACTGACTTGCAACAGTCTAATACAGATTATGTTGATCAATGTTTGACTAGTGATGAATTGACCAGCTATGCTTTTAGAACTTTGGATCAAATAATAAAGGATCAAAGTGCAAAATTGAATAAAAGTAACATGCAAGCAACTCCTAGGCGACAAATTACCAAAACAAAGAAAAAATTAAAAAAATCTAAAAAAAATCTAATTAAAAACAACCAAGGTTTGCTTAAAGATGAATTGAAAAGCCTCATTAAAACATTTCCTGAACAACAAATAACAAATACTTCCATTGAATCACAACTATTTAATAGTACAACTATTGAAAATCTAGATGCCTGTAATGATGAATTAAAAAGTCATTTGCAAGCAACTCCTGGACAACAAGTAAAAAACATAAGTACACCATTACCACTTACTAATACACCTAAGGACAATACAGACATGTCCGAGAGCATTGAAACTAAAACAAACTTCAACACCTCATTACCAAATTTATTGTATTGCGAATTATGTGAAAAGTCATTCGACACTGAGGCATTAATGTTAGAGCATTGTAATTATTTCCACAAAACATTTGAACAAGAAAAGCCATGTTTTTTTTGTAAAAAGAAATTTAACACTGTATATACATACCAAAACCATTTAGATAACGTTCATGGATACAACAAACCAGCCGCTTGTGATTACTGTGATATAATGTTTTTTGAGCGTAGTGATCTTCAAAATCATTTATTGTTGCACCAAACTGCAAGGCATTACACATGTTTAAAATGCTTGAAATATTTTTTAACTATGAAAGACTATAAGTGGCATGTCTTGGTGTCAAAAAAACACAAGTGTAATATTTGCTATATTGTGTTTGATCAGTGGCTTGATATGATACTTCATAAACGTATGGATCACAAGCGTATTAACAAATTATATTTATGTCAATTATGTTTAAAAACATTCGCTCGCAAAGAAGACATGCAGAGACACATTATAAAGCAACGCGGGTTTGGGTGGGTGGATGATCTTCTTTACTTTGCCCCGGTAAGATGTAAATGGTCAAGTTGCCTCTGGCCGTATGGAAGTAATATTAGAACCGGAGATGGTTGTCAGCTATATGCTTCACATTGTGGAAAACTGGGATTCGGTGACCTTTACATAATAATGTCGACAAGGGAAGAAGAATGGACAAGACAGACAGAGCATAGCTTACAATAA
- Protein Sequence
- MVDNIVFPLDNDLSNTNINQYKLEKYVKTTSTILNCKHLTVSTNYNNNQTNIITCEHCGTHFKTITISLNKETPSSDLLEKHITQQNICSNEASGLQMTINNKSIPNIPISVKKFIPIKSIDTPSLSDIPNKQHYSTKKAMMDPDKLNIVDSYFENCENRSSINEDQTIIEDKLLSKKGKEQNQVPRNQYIPQTINIDKPKVSTWLEICNQPTVTNSDENNLLKNTTCNYCNKSYKHIKSLKNHIRNIHNSILPYHCHLCDKRQPSKKAALVHYQMHMKLDCHPCKCCKMVFFNSSILQKHMIKEHGMFLHQCNQCEKSYKSARTLKQHMIEKHNNMINKPFKCTKCEMSYNTNENLQSHENNDHPLNALNSFQNNICPKQITNLLSTTHKQEVKSVNIELQQSDIEYENLYLTQEILKRNMQHNYEFPEYKLKSHMQSIPGLVLNKTGINLQPSNTITKHNQCLPEGELISHIQESPRQELKDTNIDLQPLKNELKSHIQASPRQELKNNEIDLQLSYNITEDNHNLYQNELKSHIQSTAKDVINNTNIDLQQSNIENENEFLHKDESKSYIQATSNLDIKNINIVFEPSESITSGNQFLPKNKLKSYNQASPRLELKNSIDLQLSNNIIKENQGLKLKHGKLLYHQCNQCEKLYKCARSLKQHKKIKHNDTTNIPFKCTKCEMSYNTNENLQSHENNDHPLNASIPFQSNICQKQTTNLLSTTSRQEIKNTNIELQNNIENENLELSKENLKRHMPDIHGLLKNKVKRHMQSTPGEEIKNTNIDSQPSESITSDIHCLPEYELKSHIQASPRQELKNNEINLHLFNYIPKDNQHFHKDELKIHIQSSAKDVINYTNIDLQQSNIENENEYLHTVKSNSYFQAIPNQELNNTNIDLQPYESIINDDQCLLEDKLKSHVQASPRQELKNNEIDLHLFNYITKDNQRFHKDELKIHIQSTAKDTINYTNIDLQQSNIENENEYLHTVESKSYFQVTPHQELNNTNIDLQPYENIINDDQYLLEGELKSHVQASPRQELKNNEIDLQLSNNITIDNQGLPENRLKCHMQVTPMHETNNSNTDLQQSNTDYVDQCLTSDELTSYAFRTLDQIIKDQSAKLNKSNMQATPRRQITKTKKKLKKSKKNLIKNNQGLLKDELKSLIKTFPEQQITNTSIESQLFNSTTIENLDACNDELKSHLQATPGQQVKNISTPLPLTNTPKDNTDMSESIETKTNFNTSLPNLLYCELCEKSFDTEALMLEHCNYFHKTFEQEKPCFFCKKKFNTVYTYQNHLDNVHGYNKPAACDYCDIMFFERSDLQNHLLLHQTARHYTCLKCLKYFLTMKDYKWHVLVSKKHKCNICYIVFDQWLDMILHKRMDHKRINKLYLCQLCLKTFARKEDMQRHIIKQRGFGWVDDLLYFAPVRCKWSSCLWPYGSNIRTGDGCQLYASHCGKLGFGDLYIIMSTREEEWTRQTEHSLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -