Basic Information

Insect: Eriosoma lanigerum
Gene Symbol: -
Assembly: GCA_013282895.1
Location: scaffold:25754807-25758481[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.024 3.2 9.0 0.1 3 23 165 183 163 183 0.91

2 16 0.043 5.7 8.2 0.2 1 23 195 218 195 218 0.91

3 16 0.0059 0.79 10.9 0.1 2 23 229 251 228 251 0.94

4 16 0.11 14 7.0 0.0 2 23 293 315 292 315 0.91

5 16 0.032 4.3 8.6 0.6 1 20 327 346 327 348 0.94

6 16 0.12 15 6.8 0.6 2 23 386 408 385 408 0.94

7 16 2.9e-05 0.0038 18.2 0.5 2 23 415 436 415 436 0.97

8 16 0.00013 0.018 16.1 1.4 1 23 442 464 442 464 0.97

9 16 6.2e-05 0.0082 17.2 2.3 1 23 470 492 470 492 0.99

10 16 5.7 7.6e+02 1.5 0.0 1 20 503 522 503 524 0.83

11 16 0.15 20 6.5 0.5 2 22 543 563 542 565 0.89

12 16 0.0039 0.53 11.5 1.5 1 23 574 596 574 596 0.97

13 16 0.068 9.1 7.6 2.2 1 23 654 677 654 677 0.97

14 16 0.0041 0.54 11.4 1.1 1 23 690 713 690 713 0.95

15 16 0.00056 0.075 14.1 5.4 1 23 723 745 723 745 0.95

16 16 0.021 2.9 9.2 0.0 2 23 854 875 853 875 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.024	3.2	9.0	0.1	3	23	165	183	163	183	0.91
2	16	0.043	5.7	8.2	0.2	1	23	195	218	195	218	0.91
3	16	0.0059	0.79	10.9	0.1	2	23	229	251	228	251	0.94
4	16	0.11	14	7.0	0.0	2	23	293	315	292	315	0.91
5	16	0.032	4.3	8.6	0.6	1	20	327	346	327	348	0.94
6	16	0.12	15	6.8	0.6	2	23	386	408	385	408	0.94
7	16	2.9e-05	0.0038	18.2	0.5	2	23	415	436	415	436	0.97
8	16	0.00013	0.018	16.1	1.4	1	23	442	464	442	464	0.97
9	16	6.2e-05	0.0082	17.2	2.3	1	23	470	492	470	492	0.99
10	16	5.7	7.6e+02	1.5	0.0	1	20	503	522	503	524	0.83
11	16	0.15	20	6.5	0.5	2	22	543	563	542	565	0.89
12	16	0.0039	0.53	11.5	1.5	1	23	574	596	574	596	0.97
13	16	0.068	9.1	7.6	2.2	1	23	654	677	654	677	0.97
14	16	0.0041	0.54	11.4	1.1	1	23	690	713	690	713	0.95
15	16	0.00056	0.075	14.1	5.4	1	23	723	745	723	745	0.95
16	16	0.021	2.9	9.2	0.0	2	23	854	875	853	875	0.95

Sequence Information

Coding Sequence: ATGGCATATACCTACGTCAGAACTGCGAACGGCCATCCAATAGTGATCGTTCCCGAATACATAGGACTTCCGAATCCTTCAGTTCGAGAGCAATTAGTGTATCCTCGAAAACCTCGTGGTCGCCGTCGTCCGGCTCGAACTTCACATCATAAATTGCCGTTCGATACGAAAAATCAAGTAATATATTACATTGAACCCGGAAGCGGTAAATGTGTGAAAAAGGACGGTGGTCATAGTGATAGTGATGATAATAATAAAGTTGACGATGGTGCTGATGTTATGGGTGTAAAGGTCAAAAGTACGAAGGACGTGAACCGAAAAGGTAGACCCAGAGGGTCAAAGAATAAGACATCCATGTGCACATCATTTAACAATCAATGCGAAAAGAGGTCGTTCACGTACTCAATCATTAGCCCGACGAAATGTAAATCGTGTAACCGGCCAATCGACGGTGACCCAGTGCTCCACTGTCTGGAAAACCACAAGACCATTTGTCCCATATGTGGGCGCACATACAAACCTCCATTGACCGCACATATCAAGTCCCACGGGGTCCGGCAAATCGAGCTGACTGTATCATGTTACGAGTGCTACGATTGTAAGGAAAAGTTCGGTAACACAGTGACCATGACGGAACACGTGCTAGACGAACACTTTGGCAACGCATCCGTCACCAAAGATATGGTTTGTTGTTTATGCGACACGCCGTTTGTCAACATCGATGATTTGCGTGACCACGTAATCATGGTCCACATGGGCGTAGTGGACACCAGAAATTTCCCGGACCGGTGCGGATATTGTGATGCGCAGACGGGCCGGTCCGCGATCGCCGAACACATGGTCGAGAAGCACTTAAATAAGACAGTTATCGACTTGAAGTGCATGTTGTGTGGCATTAAGTTCGACGACCAAACGGCTATTGTCGACCATCTGGTGAGCGTGCACTGTCCGCAAAAGACGTTCAGCCATCCGACTGTATACCGTTGCCGTGTATGTCAAGCAGGTTTCAAAAGCCAGATAAATGTACTGCGACATGCATGCAATAAGATCAAGACACCACATTGCGAACGGTGTGCAAAAACGTTTCCGTCGAAAATGAGGTACGCGTTCCACTTGCAGTTCCATGAGCACCCAAAATATGCGCCGATGCACTTACACTGCGACCTGTGTTTAGCTGAGTTCGATGATGAATACCAGCTGTACGATCACATCAGATTCCGGCATGAGCTTCACGATAAAGCGGTTTGTGAGATTTGCGGTCGAACGTTTAAGTCGACGATGGGCCTGAACATACACCGCAGGTACCATAACGGGCAGAGAAACTTTACGTGCAAATTGTGTGATAAATCGTTTCTAAACAAGTCCACACTCAGAGAACACGAAATCTCACACATGGACGTCAAACCATTCCAGTGTCACATATGCGGCCAGTACCTGAGCCGTGCGTCCCGGCTCCGATCGCATGTCAAGACGCACAAGGCTGCCGAATCGACTGAACAAATGTGCTACACGTGTGAGTCATGCGGATTCGCCGCGCCTGGTCCGGGCTCATTCGCTGAACATGCGAATAAGGAACGCTGTGGCGGCGGTGGCCAGGCGAAAATACTCCAGCTGTCATTAGTAGTCAAATGCGAGTTTTGTGACGCGACCTTCATGGATGCCGTGTGCCTGAATGGGCACCGGGACTTCGCACACAGCAACATCGACAACTCCGAGGCGTTTATCTGTGTGGTGTGCTCATCCACGTTCAGCACGTACTCTAGGCTGACCACGCACAAGCTTACGCACGGCATAAACATGGAATCGGCGTTAGTCAGCGACGAGCCATCCGAGAACGTGGACCCTGACCGATTCAACATACCTCAATTCTTCTCATGCCAATACTGCGCCAAGAAGTGTTTGCACTACACTTACTACTGTCTGCACCGGCGACTCAAGCATTCGCTTGGAGAGCAAGCGTATACATGTGACCGCTGTTTTCTCGAATTTAAAACGTCCTGGAGGCTGTCTTATCACAAGAAGAGCGTGCATGGTCAGCCCGTGATCGATAAAAAACCGTCGGACAAGTACAAATGCACCGTGTGCTCTCGGAAATTTATCAAAATCGGAGCGTTGAACCTGCACAAAACCCGTACCCACATCGACATCGTCGGTGACATATGTAAGTACCTTTGCCACCAGTGTGGTAAGTTCTTTAGCTCCGAGTGTTCTCTCAAGAATCACGCCAAATTGCACGATGGCATCATCACGTCGTCCAAACACCACGGTAACCCGGTAGCGATCCAACAGAATCGCTACAGAACGTACAGGAAATCAACAACAAACGTCAAGTCCACGAAAACAGTCAAGAACGTCGACCGAACGGACGCGCGGAATGACAAATCGTTGTTGTCACGGGTGACCGACGGCTACCCACGAAAGTCACATCTCTCATTAGTGGACGTCGAACCAAAGATCATCGACGAACCGCATCCGTTTTGCACCGCTAAAACCGTCGACGAACCACAACCGTTTTGCACCGCTATAACCGTCAACGATCGCGTACTACCGTCGAGCACAGTTTGCGATCTGTGCGACGAAAATGTCGGCGACTCCGAGACACTGAGAGCTCATTTGGAAAATCATGCCGCAACAAACGAGTGCCTTTTGTGCTGGTCGTGTTACACGACGTTCTTGTCAACTGCCGAATTCGACGCGCACGCTTCTGTGCACGTTCGGCCTGCCAATGCGACGCGTCTTGTTCAACCCGACGTACAGTTCTTCGGCGTGCCGCTAAAAAATGAGTCCGACAACGTGCCACTTATCGTGGATTGTTCGAAAATATTCCACGAAAAATCGTCCGAACGGGAAGAGTTACCAATCGCGTCGAACATCATCAGAAGCCCGGAATCGTACGTCCTTGACGAACTTCTCACCATTATCTCTACGCCACGCACGTCGACCATTTTCGACTACGACGAGTCAATGGACAATATCAACGACATGAATAACATAGACAACATAGACGACTTGTTGAACAGTATTGGTAATTGA
Protein Sequence: MAYTYVRTANGHPIVIVPEYIGLPNPSVREQLVYPRKPRGRRRPARTSHHKLPFDTKNQVIYYIEPGSGKCVKKDGGHSDSDDNNKVDDGADVMGVKVKSTKDVNRKGRPRGSKNKTSMCTSFNNQCEKRSFTYSIISPTKCKSCNRPIDGDPVLHCLENHKTICPICGRTYKPPLTAHIKSHGVRQIELTVSCYECYDCKEKFGNTVTMTEHVLDEHFGNASVTKDMVCCLCDTPFVNIDDLRDHVIMVHMGVVDTRNFPDRCGYCDAQTGRSAIAEHMVEKHLNKTVIDLKCMLCGIKFDDQTAIVDHLVSVHCPQKTFSHPTVYRCRVCQAGFKSQINVLRHACNKIKTPHCERCAKTFPSKMRYAFHLQFHEHPKYAPMHLHCDLCLAEFDDEYQLYDHIRFRHELHDKAVCEICGRTFKSTMGLNIHRRYHNGQRNFTCKLCDKSFLNKSTLREHEISHMDVKPFQCHICGQYLSRASRLRSHVKTHKAAESTEQMCYTCESCGFAAPGPGSFAEHANKERCGGGGQAKILQLSLVVKCEFCDATFMDAVCLNGHRDFAHSNIDNSEAFICVVCSSTFSTYSRLTTHKLTHGINMESALVSDEPSENVDPDRFNIPQFFSCQYCAKKCLHYTYYCLHRRLKHSLGEQAYTCDRCFLEFKTSWRLSYHKKSVHGQPVIDKKPSDKYKCTVCSRKFIKIGALNLHKTRTHIDIVGDICKYLCHQCGKFFSSECSLKNHAKLHDGIITSSKHHGNPVAIQQNRYRTYRKSTTNVKSTKTVKNVDRTDARNDKSLLSRVTDGYPRKSHLSLVDVEPKIIDEPHPFCTAKTVDEPQPFCTAITVNDRVLPSSTVCDLCDENVGDSETLRAHLENHAATNECLLCWSCYTTFLSTAEFDAHASVHVRPANATRLVQPDVQFFGVPLKNESDNVPLIVDCSKIFHEKSSEREELPIASNIIRSPESYVLDELLTIISTPRTSTIFDYDESMDNINDMNNIDNIDDLLNSIGN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -