Basic Information

Insect: Eriosoma lanigerum
Gene Symbol: -
Assembly: GCA_013282895.1
Location: scaffold:11352508-11355106[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00069 0.092 13.8 0.5 2 23 201 222 200 222 0.97

2 10 0.004 0.53 11.5 5.0 1 23 240 262 240 262 0.97

3 10 4.8e-06 0.00064 20.6 4.1 1 23 267 289 267 289 0.99

4 10 0.011 1.4 10.1 1.2 1 23 297 320 297 320 0.96

5 10 5.1e-05 0.0069 17.4 0.8 1 23 325 350 325 350 0.97

6 10 1.7e-06 0.00023 22.0 0.6 3 23 359 380 357 380 0.94

7 10 0.0013 0.17 13.0 1.8 1 23 388 410 388 410 0.98

8 10 0.032 4.3 8.6 0.2 3 23 424 447 422 447 0.90

9 10 1.8e-05 0.0024 18.8 2.0 1 23 453 475 453 475 0.97

10 10 0.076 10 7.4 6.5 1 23 480 503 480 503 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00069	0.092	13.8	0.5	2	23	201	222	200	222	0.97
2	10	0.004	0.53	11.5	5.0	1	23	240	262	240	262	0.97
3	10	4.8e-06	0.00064	20.6	4.1	1	23	267	289	267	289	0.99
4	10	0.011	1.4	10.1	1.2	1	23	297	320	297	320	0.96
5	10	5.1e-05	0.0069	17.4	0.8	1	23	325	350	325	350	0.97
6	10	1.7e-06	0.00023	22.0	0.6	3	23	359	380	357	380	0.94
7	10	0.0013	0.17	13.0	1.8	1	23	388	410	388	410	0.98
8	10	0.032	4.3	8.6	0.2	3	23	424	447	422	447	0.90
9	10	1.8e-05	0.0024	18.8	2.0	1	23	453	475	453	475	0.97
10	10	0.076	10	7.4	6.5	1	23	480	503	480	503	0.97

Sequence Information

Coding Sequence: ATGACTGAAGTTGGGGTTTTAGAATCATTCACATTTTTACATTCTGCTATCAATATCAACCCGCAGCATGAACAATTTCTTAAAAGAATACAAATGCCTATTGACCAATTAAAGAAATGGTTATTAGAAGTATGTACTGAGTGGAAAGCAGAAGATTTAGCATCTCTTGGAAATGTAATAGAGCCACCGATGACTCCTAATAATATAGATTTAACCATGAATGGTCCTGACTATATCACTCCTTTAATAAAAGAAAAAATAGATTCTGTGTTAGGTTTCCGAAATCCAGTTAGTCCCATTCTTTGGAGTGTTGGATTAAGACCAATACCAGATTCTAAGGATGGTTTTGAAATAGATGATGATCAACGGTTACCTACTGATTTCATTGCACCATCATTTGGAGATTATGAAAGTCCATCATCAGAACCTTGGAATGTTTATCAAGAATCTAATTATGATTTGGAACAGACCAATATTGATGAAAAAGGCCCTCTAACACCAAATATAAAATTATATAGAAAAGAAGATCAAATCATTCAAAACACAAGTTCAAATTTATCATGTTTTCCTAATGAAATCATTGACGATAAAATTGTTCTTTCATGTGAAAAATGTAAAAATGAGTTTGGATCATCTAATGAGTTAGAGGAACACTTAAAAACACATGAACTCAAAATGAAATCTACAAGTTTATGCTTAACTTGTGGTACTTACTTACATAACTGTTATGTATGCAATAAACAATACACGACAAAAGGAAAGTTGAATTTTCATATGAAGACCCATCAAGAAGCACAATTTAAATGTACGATGTGTTTTAAACAATTTTCTACTCGACAATATTTAAATAACCACATGAAAATACATCCAGATAAGAATGAATTTGGATTCAAATGTGATGTATGTCAAACAATGTTTTTAAAAAAGAAGGCATTACTTGTACATAGAAAACAAGAACACTCATTTTGCATGTTTAAATGTTCAGCATTTGAATGTAATAAAGAATTTACAACGATCCAATTGTTAAATAGGCACGTTCAACGTATACATGATGTAAATGATAAAGGAGTGATATGCAAAAAATGTGGAAAATCCTTCAAATTTCCTAATTACTTACAAAAACACATTGTTAGGGTTCATGGCCCTAACCGGTTACCCAAATTTAAATGTCGACAGTGTCCACAACGTTTTGATAGTGATATAATGTTGCATGTACATATGCAATCACATCCTAAGGATGAAAAGAAAAAAGAAAACAAACGTGTTAGTTGTCCTCGAGAGTCATGTAATTTAACATTTTACAATCGTGTTGGACTTCGATATCATATTGCAGAAAAACATGATAATATTTATCGGTATGAATGTGAAATTTGTCAAAAGAAATTTGTTCGGAAAAATCATTATGAACTTCATAGGGCTATTCACTTAAAACCAAATTTTACTTGTAATGTGTGTTGTAAAAAATTTCGGAAAAAAAATCGCCTAGTATCTCATTTGAAAAAGACTCATCAAAATGAAACATATGATTTTGGAATGCTCTTTGGCATTGAAACCTTAGAAAAATTAATTTTATAA
Protein Sequence: MTEVGVLESFTFLHSAININPQHEQFLKRIQMPIDQLKKWLLEVCTEWKAEDLASLGNVIEPPMTPNNIDLTMNGPDYITPLIKEKIDSVLGFRNPVSPILWSVGLRPIPDSKDGFEIDDDQRLPTDFIAPSFGDYESPSSEPWNVYQESNYDLEQTNIDEKGPLTPNIKLYRKEDQIIQNTSSNLSCFPNEIIDDKIVLSCEKCKNEFGSSNELEEHLKTHELKMKSTSLCLTCGTYLHNCYVCNKQYTTKGKLNFHMKTHQEAQFKCTMCFKQFSTRQYLNNHMKIHPDKNEFGFKCDVCQTMFLKKKALLVHRKQEHSFCMFKCSAFECNKEFTTIQLLNRHVQRIHDVNDKGVICKKCGKSFKFPNYLQKHIVRVHGPNRLPKFKCRQCPQRFDSDIMLHVHMQSHPKDEKKKENKRVSCPRESCNLTFYNRVGLRYHIAEKHDNIYRYECEICQKKFVRKNHYELHRAIHLKPNFTCNVCCKKFRKKNRLVSHLKKTHQNETYDFGMLFGIETLEKLIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -