Elan026269.1
Basic Information
- Insect
- Eriosoma lanigerum
- Gene Symbol
- ZNF236
- Assembly
- GCA_013282895.1
- Location
- scaffold:48251833-48262416[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.023 3.1 9.1 2.9 1 23 184 206 184 206 0.95 2 13 0.00027 0.037 15.1 2.6 1 23 212 234 212 234 0.98 3 13 3.2e-05 0.0042 18.1 1.4 2 23 240 261 239 261 0.97 4 13 0.057 7.6 7.8 1.6 2 20 268 286 267 288 0.92 5 13 3.1e-05 0.0042 18.1 3.3 2 23 311 332 310 332 0.96 6 13 1.4e-06 0.00018 22.3 6.0 1 23 362 384 362 384 0.99 7 13 1e-05 0.0014 19.6 4.5 1 23 390 412 390 412 0.98 8 13 8.9e-05 0.012 16.6 5.0 1 23 418 441 418 441 0.98 9 13 0.0048 0.64 11.2 4.0 1 23 451 474 451 474 0.97 10 13 1.6e-06 0.00022 22.1 0.3 3 23 709 729 708 729 0.97 11 13 7.2e-06 0.00096 20.1 0.6 1 23 735 759 735 759 0.98 12 13 0.0023 0.31 12.2 0.3 3 23 768 788 767 788 0.98 13 13 6.1e-06 0.00082 20.3 0.3 1 23 794 816 794 816 0.98
Sequence Information
- Coding Sequence
- ATGGAAGACCATCTTCAAATATTGGAAAACACAGATACTGAGTATCTTACCTTGTCATATGTTGATCAAGCGTTGGACTCTAATGCTGAACAGTTATCAAATGAAAGTATTAATTTAGGTTCAGTCAGTTATCAAAACATTAGTACTATGACTCCTTTAAATGATTTACTGTTAGGACAAACATTCATAATAGAAACAGAAGATCATCCCATATTTATTAATGGTGTACAGTTAATTACATTGCAAGATATTGATTCAAATGAACAATTGAATAATATCCAGACAATTTCAACAACAGATTCTGATAAATCAACAATTCAAAATATTGATTTTGATATAGGTTCTAATCACTTACAGGACACATGTACAGATTTTAATCAAATGAGTTCAGGCTTGTTGAAAACAACTGCAGTTAGTAATAATTTGAAAGACCATTTAGAAATTTTAAACAATACTGATATTGATACAACTAGAGGAAACTATAGTAATTCCACTGCTATTAAAATATTAGATGATGTTGCTAAAAGTCCTATTGATAAAAATGGTCATTTTATTTGTGATTTATGCCTATGCGAGTTTTACAATTGGCAAAATTATAAAAGGCACAAATTAGAACATTTAAATGATAAACCATTTAAATGTTTAAAATGTTTTAAATCTTTTAATTATAATAATAATTATCTTCTTCATATTGCGACCCACCTAACAAATAATTTAAAATGTCCACAATGTAAAAAAGAATTTAAACGCATTGCTAGCTTCAAATCTCATTTAAAAATTCATAAAACTGAAGAATCTATTACCTGTAATATTTGCTGCAAGATATTTAATAATCAGTATCATTTGGATATTCATAAGGAAAATTGTTTGCAAGAAAACCTAATTAATTCAGATAATCATATGGAAATAATTTCTATTGCTTGTTTTAAAACATGTAAAACTTGTAAAAAATCCTTTTCTACTCAATCAGAATATAAAATGCACGTCAAAGAGCATACAAAATTTGATTTAGTATTGAAAAAACAATATAAATTTACAATGAAGCATAAAAACGGCCATAAAACTCGCAGTACTATTAAAAGATTTAAATGTGATCATTGTGATTGGTCATTTAATAAGTCAAATCTTTTACATCGACATATGAGAACACATACTGGAGAAAAACCGTTTAAATGTTCATATTGCTCAAGATACTTTACTCAACAAAATTCTTTAAAGAGACATCTATTGAAACATAAAGGTTTACGACCATTCAAATGTGAATTTTGTGAAATGAATTTTGCTCAAAAAGGACATTTAATTAATCATATGAAAAGATGTCATGCTGTTACAAAAGAAGCTACACGTATTCATAAATGTTCTATGTGTACTTGTGTTTATAACAGTCTTAATGCTCTCAATAAACATTTGAATATATATCACGGTTTGAAAAATGAGAAATCAAACATTGTTGACCAAAATCATGGTTTAAAAAATGTTGAAACGGATTCTATTAATGAAAATTTAAATTTTAAGGATCCATCAAAATTAGAAAAATGGTTAGAAGAAGTAGCTCATGAATTACAAAGTGATGATGATGATAACATAAAATTAAATGCACCAATTTCAATTCAATGTGAATTTGGATTAAATTTAATTGAAAATGAACATTATGACCATATTGATAAAGACTCTAGTCCAGTTTCTAATATAAATATTGACATAAATATTTATAATGTCGCGGAGAAAAAACAAGAAAAATTGTCAAACCAAATATGTGATACTGTTGTTCAAAATCAGGAAAAAGATCAAGAACTTGTGAATACCATAGTTAATGAATCAATGTCAAATTTAAAAAAAAACACAATTAAGGTAGTTCCTTCAAAAAAAAAAAGTCACCGTGGTACAATGCCTAAATCGGATATCAAAAAAATTTTATCCAAGAAAACAAAATCTCATACTTTAAATTTAAAAAGCAATAATATTAGTCATTTGTCAATGAAGAGTACACATCATATGAGTGTTAAAGCCGAACCTAAAGTATTATATGTACCAAATATTACTACCGAGTTAAATGATGTAGACAGTTGTATAGTTAGTTATGAGCAATTTACATACAAGACACAAAAACCGCAACCAAAAATATGTCAGTATTGTGGAAAAATATTTAAAAAGAATGCCGATCTTGAAAGACACGAAAGGATACATACTGGTGACAAACCTTATAAATGTGATAAACAAGATTGTAACAAAGCATTTGCTACTAAAAGCTCACTAGAGTATCATGCAATCACTCATGTGGGTAAAATGAAACGAGCTTTATGCCCAGAATGTAATGGACTTTTCGCTACTACTTCATCTATGAAAGTTCACATGCGACAGCATACAGGTGAAAAACCATATAAATGTCCTGTATGTGGTGACGCATTTCGAACATCTGGTCATTTACGTACACACGTAATAATCCACGAACGAAAAAAGAAACCAAAACAATAG
- Protein Sequence
- MEDHLQILENTDTEYLTLSYVDQALDSNAEQLSNESINLGSVSYQNISTMTPLNDLLLGQTFIIETEDHPIFINGVQLITLQDIDSNEQLNNIQTISTTDSDKSTIQNIDFDIGSNHLQDTCTDFNQMSSGLLKTTAVSNNLKDHLEILNNTDIDTTRGNYSNSTAIKILDDVAKSPIDKNGHFICDLCLCEFYNWQNYKRHKLEHLNDKPFKCLKCFKSFNYNNNYLLHIATHLTNNLKCPQCKKEFKRIASFKSHLKIHKTEESITCNICCKIFNNQYHLDIHKENCLQENLINSDNHMEIISIACFKTCKTCKKSFSTQSEYKMHVKEHTKFDLVLKKQYKFTMKHKNGHKTRSTIKRFKCDHCDWSFNKSNLLHRHMRTHTGEKPFKCSYCSRYFTQQNSLKRHLLKHKGLRPFKCEFCEMNFAQKGHLINHMKRCHAVTKEATRIHKCSMCTCVYNSLNALNKHLNIYHGLKNEKSNIVDQNHGLKNVETDSINENLNFKDPSKLEKWLEEVAHELQSDDDDNIKLNAPISIQCEFGLNLIENEHYDHIDKDSSPVSNINIDINIYNVAEKKQEKLSNQICDTVVQNQEKDQELVNTIVNESMSNLKKNTIKVVPSKKKSHRGTMPKSDIKKILSKKTKSHTLNLKSNNISHLSMKSTHHMSVKAEPKVLYVPNITTELNDVDSCIVSYEQFTYKTQKPQPKICQYCGKIFKKNADLERHERIHTGDKPYKCDKQDCNKAFATKSSLEYHAITHVGKMKRALCPECNGLFATTSSMKVHMRQHTGEKPYKCPVCGDAFRTSGHLRTHVIIHERKKKPKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -