Elan007650.1
Basic Information
- Insect
- Eriosoma lanigerum
- Gene Symbol
- -
- Assembly
- GCA_013282895.1
- Location
- scaffold:29210195-29216863[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0088 1.2 10.4 0.5 1 23 442 464 442 464 0.96 2 12 0.00014 0.019 16.0 1.1 1 23 472 494 472 494 0.98 3 12 0.00021 0.029 15.4 1.8 1 23 501 523 501 523 0.97 4 12 1e-06 0.00014 22.8 1.3 1 23 529 551 529 551 0.98 5 12 0.0046 0.62 11.3 1.3 1 23 558 580 558 580 0.96 6 12 6.8e-06 0.00091 20.2 0.1 1 23 586 608 586 608 0.96 7 12 4.7e-05 0.0063 17.5 0.1 1 23 614 636 614 636 0.97 8 12 7.4e-07 9.9e-05 23.2 1.2 1 23 642 665 642 665 0.96 9 12 1.8e-06 0.00024 22.0 0.9 1 23 671 694 671 694 0.96 10 12 2.7e-05 0.0037 18.3 1.4 1 23 700 722 700 722 0.98 11 12 9e-05 0.012 16.6 0.4 1 23 728 750 728 750 0.94 12 12 0.0045 0.6 11.3 0.1 1 21 756 776 756 780 0.92
Sequence Information
- Coding Sequence
- ATGCGTTTTTGGTTGGTATGGGGACCGGATAGCCATCGGCCAACACTGGGTCGACAATGCTGTTCGGGAATAATTTTTCATATTGGCAACTTTGGTTCAAAGAATACAGGTTGTCCATTTTTCGGCGGAACTAGCCGACAGACATATTTATTATTATTTTTTCAATCCTGTCTTTTGCGTACGCGTAATTCCGTAATTCGTACGTCCTACAGATCAAAGCTCAACGGCATGAACGGCGATCGCGTTCGTTTTGGATTTGTTTCCGACGCGATGCCGTTCCGCCGCTACAGATATATTGGCCCGCTGACACCGATGATCGCTTTATTTGAAATTGATTACCCTAAAGATTCATATAATGACTAATATTTAATCTATTGGAAAGTTATGGCTACTGATCCAGAACAAGATAGGTCATCAATAACAACATCTAATACATGTTTGATTTGTGATGGTAGCACAGGAGTATCTGCGCGAAATGCTATCTCAATATTTCAGCATCGTGTATCGTCTTCAGACCGTACTGTTGTGAAAGTGATTGATGGAGTTCTTGGTATAACCTTATCATCTGAAGATGTGCATTCTGTTGTTGTATGTCGTCGATGTTTTAAATCTCTAAATGAAGTGGACGAGCTTGATGATCGATTAGCTGACATTAAGTTAGAACTTACCACTCAGTATCAGCGTACTCTCAAGAGTAAATCTGAAGGTTTAGAAATACAAACTATTGAATCTATTGATATTGAACAAGGTGCTGATACGCCAAAACCAGTTAGAAGACGAGGGCGACGTCCTAAGATTAAAGAAGAATCTATAGATATACCTGTTTCCAGTGCAGAACTTATACAAAATAATGTTCTTGACAAAAATGATAAACAAAAACGTTCATCAGTAGAGAATTTAATAGAAATGCTAGAAAATGAAGATAAAGATAATGATGAAGGTATAACCAATGATATAGAAGATGATTGTTCTGAAAAAATGATTCAACCTGCTGATATTAAACAAGAAGCTATGCATCCAGATTTAGAAACTATTGATGATGAAGAAGAATTAGATGAGAACGCAATGATTGATGATGATGATGATTCTGATTATGAAGGAAATGATGATTCTAAAAATGACAATGAGTCCAGTAGTCCCAAAAAAACAAAAATTAATAGAAATTCTATAAAGAAGAAAACTCCTGAAATTCTTATACCCCAAATGTTGGTTCATCATGATGGAGAAGTTTACACTTGCTTATTGTGTAGTGTAGATAATAAATTTACAGCAGATGCCAGAGGTATTGTTGTTCATGCAAAAAATGTGCATCAAATTAAATTATTTATTTGTGATATATGTGGACAAGAATTCCTTAAAAGACCTGAACTTATGAAACATCTAGAACATCATGCAAATAGTGAAGATGGTAATTTTGTTTGTGATATTTGCAGTAGAGTATTTACCAATGTACGTATGTTTAGAGTGCATAAAAAAATGCATATGCCTCAATCTAAAAACCATACTTGTGAAACTTGTGGCCGACAATTTGCATCTCGTAATACACTTGAAGAACATAATAATACACATACTGGCGTGCGTCCATATCGTTGTGATATTTGCGGTAAAGATTTTACATCCAAATATACATTCAAAGCACACGAAAAAGTACATACTAATCGTGAGAGAAATTTTACCTGTATTAATTGTGGTAAAGCATTTCTTACTGAACAAAATCTTATTCATCATGAACGGACACATTCTGGCCTTAAAAATTACGTATGTCAAAAATGTGGTAAAGCTTTTGGAACTGCACGAAATCTGGAAGTGCATTATGTTGTGCACACTGGTTATAAACCATTTATTTGTCGAATGTGTGGAAAAGCTTTTGCTAGAAAAGCTGAAATTAGAGATCACGAGCGTATTCACACTGGAGAAAAACCATACCAATGTGAATTTTGTGGTGCAACATTCAGTCAAAGAAGCAACTTGCAATCTCATAAACGTGCTACCCACTATGATGATAAACGTTATAAGTGTACAGATTGTGGTAAGGGATTTAAAAGACGTCGTTTATTAGATTATCATATGAAAGCAGCACACACTGGTGAAAGACCATTCAAATGTGAAGTTTGTCAAGCATCATTTATTTATCCAGAGCATTTTAAAAAACATGCACGTATTCATACAGGAGAAAAACCTTACTTATGTGAAGTCTGTGGTAAAGCATTCAACAGTCGAGACAACAGAAATGCTCATCGTTTTGTACACAGCGACAAAAAGCCTTATGAATGTTTGGTGTGTGGTGCTGGATTTATGCGTAAACCATTACTTTACAATCATATGACTCAGGCTGGACATTTGAATGATACAATTGTTGTAAATCAACCGCGGCTAGCATCGAGCCCAGTCACCATACAAGAAATCCAAGAAGACATTCAAATGCCAGGTACTGATTCCGAAATGGAGTTAGCAATGGTTGTTGATTCTGATGGAAACCAAACAGCATTGCGTGATATGACTGAAGAAGAGAGGAAACTGTTTGCCGGAGAATTAAAAGAACACATTTTATTGCCAGGAAAGCAAGAAGTTCTTGATAATGATTTAAGTTCAGTTGAGCAGATACTTGTTGATAATAAATATCAGATCCAATACACAACTACTGATCAGCATGGCGATGTTCATACTATGTTAAACATGGATCATCATGGTGATGACACTGAAGTGGTGGATGTAGGCCATATGGAGACTGTGACTGTAAGTGTAGGTGGTCAAGAACATCGTCAGTTAATAGTGCCAGCTACTCGTCATATTACGTTAAATGAAAGTGATGCTGCTGCATTTGCTGAACATGCAACAATAAATGGTGAAAATGTGCAAATTGTACAGATTCAAATACAGGATGATGATGGGGAAGACCAAAAACATTGGTTCAACATTATTCAACCACAACAAGGATAA
- Protein Sequence
- MRFWLVWGPDSHRPTLGRQCCSGIIFHIGNFGSKNTGCPFFGGTSRQTYLLLFFQSCLLRTRNSVIRTSYRSKLNGMNGDRVRFGFVSDAMPFRRYRYIGPLTPMIALFEIDYPKDSYND*YLIYWKVMATDPEQDRSSITTSNTCLICDGSTGVSARNAISIFQHRVSSSDRTVVKVIDGVLGITLSSEDVHSVVVCRRCFKSLNEVDELDDRLADIKLELTTQYQRTLKSKSEGLEIQTIESIDIEQGADTPKPVRRRGRRPKIKEESIDIPVSSAELIQNNVLDKNDKQKRSSVENLIEMLENEDKDNDEGITNDIEDDCSEKMIQPADIKQEAMHPDLETIDDEEELDENAMIDDDDDSDYEGNDDSKNDNESSSPKKTKINRNSIKKKTPEILIPQMLVHHDGEVYTCLLCSVDNKFTADARGIVVHAKNVHQIKLFICDICGQEFLKRPELMKHLEHHANSEDGNFVCDICSRVFTNVRMFRVHKKMHMPQSKNHTCETCGRQFASRNTLEEHNNTHTGVRPYRCDICGKDFTSKYTFKAHEKVHTNRERNFTCINCGKAFLTEQNLIHHERTHSGLKNYVCQKCGKAFGTARNLEVHYVVHTGYKPFICRMCGKAFARKAEIRDHERIHTGEKPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCTDCGKGFKRRRLLDYHMKAAHTGERPFKCEVCQASFIYPEHFKKHARIHTGEKPYLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYNHMTQAGHLNDTIVVNQPRLASSPVTIQEIQEDIQMPGTDSEMELAMVVDSDGNQTALRDMTEEERKLFAGELKEHILLPGKQEVLDNDLSSVEQILVDNKYQIQYTTTDQHGDVHTMLNMDHHGDDTEVVDVGHMETVTVSVGGQEHRQLIVPATRHITLNESDAAAFAEHATINGENVQIVQIQIQDDDGEDQKHWFNIIQPQQG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01329191;
- 90% Identity
- iTF_01305029; iTF_01329191; iTF_01304358;
- 80% Identity
- -