Elan001479.1
Basic Information
- Insect
- Eriosoma lanigerum
- Gene Symbol
- -
- Assembly
- GCA_013282895.1
- Location
- scaffold:5100750-5110821[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00017 0.023 15.7 0.8 2 23 326 347 325 347 0.95 2 19 0.0012 0.17 13.1 0.0 1 23 357 379 357 379 0.94 3 19 0.00064 0.086 13.9 1.1 1 23 385 408 385 408 0.95 4 19 4.6e-05 0.0061 17.6 4.5 1 23 414 436 414 436 0.97 5 19 1.6e-05 0.0021 19.0 0.1 1 23 442 464 442 464 0.98 6 19 0.0003 0.04 15.0 2.9 1 23 470 492 470 492 0.97 7 19 0.00035 0.046 14.8 1.2 2 20 499 517 498 519 0.93 8 19 4.7e-08 6.2e-06 27.0 0.9 1 23 526 548 526 548 0.97 9 19 2.2e-05 0.003 18.5 0.4 1 23 554 576 554 576 0.97 10 19 1.2e-06 0.00016 22.6 0.3 1 23 582 604 582 604 0.97 11 19 7.2e-06 0.00097 20.1 0.6 1 23 610 632 610 632 0.95 12 19 1.8e-07 2.3e-05 25.2 0.5 1 23 638 660 638 660 0.98 13 19 1.6e-06 0.00022 22.1 0.1 1 23 666 688 666 688 0.97 14 19 0.24 32 5.9 1.9 1 21 699 719 699 720 0.94 15 19 6.7e-05 0.009 17.0 1.1 1 23 734 756 734 756 0.97 16 19 5e-05 0.0067 17.4 1.1 1 23 763 785 763 785 0.96 17 19 9.5e-05 0.013 16.6 5.8 1 23 791 813 791 813 0.97 18 19 0.00015 0.02 15.9 1.0 1 23 819 841 819 841 0.98 19 19 0.00061 0.081 14.0 1.6 2 23 850 871 850 871 0.92
Sequence Information
- Coding Sequence
- ATGAGAAACAACGAAATGCGACGAGGTACTACACGCATGCGCTGTAGAACATTTAGCAGCCAAAAAAGCAGAATAGATCGGTTTCACACTGAAGTGGCTCGGTATAGCTCGGTACAACAAACACGCCTTGGAATGGGTATGGCGTGGCGTGGCTCGCGTACTCGTGTCTATCCGTCGATTGTCGGTTTTTGGTACCCCAGTCAAAGGAGACGAGTCGCCCTAATTGCTCGGTTCGTCAAATCGATCCAACGCGTTCAAATGGTTCGGCAATTAATGCTGAGTTTAAAGACGCGCAGAGCAACACGCCATAAATTGATGAACGATTTCAAATTAGTTATAATCTTACAATATGACAACGTTCGTTCACACACCTTACACACGACCGTAAGGGCTCTGCAAAATCTGAAGTTTGAACCAATTCCACACCCTCCTTACTTCATTGATCTTGCGCTTTGCGATTTTTATTTTTTCACTCTCCACAAGAGAGACCACAAGGGATATCACCTCGGATCAGTAGCGTATTTAGGATTTTGTCAAGGGGAAGGGAATATGGGATATATGAACGGTGGAGTCGAAATTGTAGTTACCGAAAAATCTGGTGAAAAACGTTTGCTCACTGTCCAAGGAACAACCGTTGAAAGTACAGATGATCGAAGGGTTCATGAAAATATTGGATATGGAATATTTGTTCAAGGATTAAATGGAGATTTAGCACATTTATTATTAGATCATGAAGAAGTGGGTACTATGACAGTGGAAAGTTTGGCAAAAATAATTAATGGCCAAGAAACAATAAGTGTATCTGGGCAAATCCAAATAAATAATTTAAAAATTGAGAATGTGGATTTATCTAATCATGATGGAACAACAGAAATTTATATTGCAGAAGAAAAGAATACAATTGCAATTGATATGGCCAATGAAGCAGTTGCAAACTGTCAAAGTCTTATGCGACCTAACCCAATGGATGAATTACAATGTCAGAAATGTGGTAAACGGTTCGCAGACATTAATACTTTAAAATCTCATGAGACTAGTCATGATGGAAATCAAAATGTAGAGTGTAAATTTTTGTGTACTGTTTGTGGAGAAAAATTTGACAAGGCAAATGCTTTGAGTGCACATTTAGTTATTCACCGTAATATTAAATTACATCATTGTGAAGTTTGTGGATTAGTATTTTCTGATGATCAATCGTTAAAAGAACACACTCTTTCAGTACATTCTCGCCAGAAATTACACACTTGTCAGAAATGTGATAAGAAATTTCCTTCTAGTTACAGATTGTTTCGTCATATGACAATTCATACAGAAAATCCTCCATTTATTTGTGACCAGTGTGGTATAACTGTGGCAAATAAAAGTGATTTAAAATTGCATATTATGAAACATACTGGTAGTGCTGTGTATACTTGTACTGAATGTGATAAGAGCTTTTTAAAGCCGTCATGTTTGCAACGGCATTCAAGCGTACATACTGGTGAACGACCACTGCACTGTAAAATTTGTAACATGACCTTTACTTATTCTAGTAATTTGTGTGGGCACTTAATAGCCAGCTCTAAAGCAAAGCCTCATCCATGTACTTTGTGTGAAAAGTCTTTCCGCCGTCCATCTGATTTAGAACGTCATATGATGATTCATACTGGTGAACGTCCGTTTGTTTGTCAAGTTTGTTCTATGTCATTTATAACTAATTACAATTTAAAGGTGCATTCAATGGTTCATAATGGGGGTTTGCCGTATCCGTGTTCATCATGTGATAAAGCGTTTAGCAAACCTTCAGAATTACAGAGACATAAATTGGTACATTCGAGAGAGAAACCATTCTCATGTATCAAATGTGAAGCGACCTTTACAAATCAAAGTAATCTTAAAGCTCATATGATAACACACACAGGTCGTAAGCCATTTCCCTGTCGTATTTGTAATAAAGGATTTACGCGTCCATCTGATGTCAAACGTCATATGCTCACACATACAGGTTGTCGTCCGTTTGCGTGTGATGTATGTGGTTTGGCTTTTGCTGACTCATCTAATTTGAAAAAGCATTCTTTAACTCATTCTAAAGATGATCAAAAACTTGCTTTACAACATCAGTGTCCTTCGTGTTGTTTGTCTTTCTTCTCATATGAGCAGCTCAATGAACATATGATCTCTGGAAATTGTACTAATAATAGTGGTCAAGCTGAACCTAAATATTCGTGTAAGGAATGTGGTGCTTCATTTAATCATGCATTACATTTGCAAGAGCATGCAATCATGCATTCCAACCACCGGTCTGTGCATAGATGCGATGTATGTAATAAAACATTCATACAAGAGTCATTTTTGATTGCACATAAGGCTTCACATACGGAGTCGCGGCCACATCGTTGTGATGTCTGTTTTAAGAGATTTAAGAGCACTTCACATCTGAAGAATCATGTTATGATTCATTCAGGTGTTAAGCCTTTTGAGTGCACTGTTTGCAACAAGTCGTTCTTAAAATTGGCCTCATTAAGACGTCATTATGCAACACACGATCGTGTGAACTTTTCATCTGCAGTATGCCATCAATGTGGAAAATCATTTCTCAATCAGGAGTATTTAAAGAAACACAGTGTTGTACATGCTGATACATAA
- Protein Sequence
- MRNNEMRRGTTRMRCRTFSSQKSRIDRFHTEVARYSSVQQTRLGMGMAWRGSRTRVYPSIVGFWYPSQRRRVALIARFVKSIQRVQMVRQLMLSLKTRRATRHKLMNDFKLVIILQYDNVRSHTLHTTVRALQNLKFEPIPHPPYFIDLALCDFYFFTLHKRDHKGYHLGSVAYLGFCQGEGNMGYMNGGVEIVVTEKSGEKRLLTVQGTTVESTDDRRVHENIGYGIFVQGLNGDLAHLLLDHEEVGTMTVESLAKIINGQETISVSGQIQINNLKIENVDLSNHDGTTEIYIAEEKNTIAIDMANEAVANCQSLMRPNPMDELQCQKCGKRFADINTLKSHETSHDGNQNVECKFLCTVCGEKFDKANALSAHLVIHRNIKLHHCEVCGLVFSDDQSLKEHTLSVHSRQKLHTCQKCDKKFPSSYRLFRHMTIHTENPPFICDQCGITVANKSDLKLHIMKHTGSAVYTCTECDKSFLKPSCLQRHSSVHTGERPLHCKICNMTFTYSSNLCGHLIASSKAKPHPCTLCEKSFRRPSDLERHMMIHTGERPFVCQVCSMSFITNYNLKVHSMVHNGGLPYPCSSCDKAFSKPSELQRHKLVHSREKPFSCIKCEATFTNQSNLKAHMITHTGRKPFPCRICNKGFTRPSDVKRHMLTHTGCRPFACDVCGLAFADSSNLKKHSLTHSKDDQKLALQHQCPSCCLSFFSYEQLNEHMISGNCTNNSGQAEPKYSCKECGASFNHALHLQEHAIMHSNHRSVHRCDVCNKTFIQESFLIAHKASHTESRPHRCDVCFKRFKSTSHLKNHVMIHSGVKPFECTVCNKSFLKLASLRRHYATHDRVNFSSAVCHQCGKSFLNQEYLKKHSVVHADT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -