Elan012446.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Eriosoma lanigerum
Gene Symbol
-
Assembly
GCA_013282895.1
Location
scaffold:24290321-24293924[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.035 4.7 8.5 0.2 1 21 38 58 38 59 0.95
2 28 1.9e-05 0.0025 18.8 6.7 1 23 94 116 94 116 0.99
3 28 7.6e-05 0.01 16.9 4.2 1 23 122 144 122 144 0.97
4 28 7.1e-05 0.0095 17.0 5.2 1 23 150 172 150 172 0.99
5 28 8.3e-06 0.0011 19.9 2.9 1 23 178 200 178 200 0.99
6 28 4.4e-06 0.00059 20.8 2.2 1 23 206 228 206 228 0.99
7 28 4.7e-06 0.00063 20.7 1.6 1 23 234 256 234 256 0.98
8 28 5e-07 6.6e-05 23.7 1.7 1 23 262 284 262 284 0.98
9 28 2.5e-06 0.00034 21.5 0.4 1 23 290 312 290 312 0.97
10 28 0.84 1.1e+02 4.1 5.5 3 23 437 459 435 459 0.80
11 28 3e-05 0.004 18.2 1.3 1 23 465 487 465 487 0.99
12 28 3.2e-07 4.3e-05 24.3 0.5 1 23 493 515 493 515 0.99
13 28 2.2e-05 0.0029 18.6 5.5 1 23 521 543 521 543 0.98
14 28 0.0009 0.12 13.5 2.4 1 23 549 571 549 571 0.94
15 28 1.5e-05 0.002 19.1 0.8 1 23 577 599 577 599 0.98
16 28 0.0017 0.22 12.6 1.4 1 23 625 647 625 647 0.97
17 28 4.2e-06 0.00056 20.8 3.7 1 23 653 675 653 675 0.99
18 28 4.5e-07 6e-05 23.9 1.0 1 23 681 703 681 703 0.99
19 28 1.2e-06 0.00016 22.5 0.4 1 23 709 731 709 731 0.99
20 28 7.9e-05 0.011 16.8 1.1 1 23 822 845 822 845 0.98
21 28 7.8e-05 0.01 16.8 2.0 2 23 879 900 878 900 0.97
22 28 2.3e-06 0.0003 21.7 2.4 1 23 906 928 906 928 0.98
23 28 0.00021 0.028 15.5 1.1 1 23 934 956 934 956 0.98
24 28 0.0019 0.26 12.5 0.4 1 23 962 985 962 985 0.97
25 28 2e-05 0.0027 18.7 2.9 1 23 991 1013 991 1013 0.98
26 28 5.1e-05 0.0069 17.4 2.3 1 23 1019 1041 1019 1042 0.95
27 28 1.1e-06 0.00015 22.7 2.0 1 23 1068 1090 1068 1090 0.99
28 28 1e-05 0.0014 19.6 2.7 1 23 1096 1118 1096 1119 0.95

Sequence Information

Coding Sequence
ATGACAGAACGCTCGGAAGAAATGGTTGATGATGAATCCTTTCAAAATCCAAGTGAATCCATGCATTTTGAAATGGTTGAAGGTGAAGAAGAAACTATTCTACCAAAAGAATATATATGTAATAAATGTAACATTATATATTACAAACGTTCAGAAATAGTAAAACATTTAAAATTGTCTTATTGTGAGAAAACTCCTTCAGTTATTGATCAAGTAGTTCCTATAATTAAAAAATTACCAGGTTTATCAAAATGCAAACGATCTTTTCAATATAAACGTTACCAATGTGAAATTTGTTCAAAACACTTTTCAAACAAGACAAAATTAACTCATCATACTAGAATACATAATGGAGAAAAACCATTTCATTGCAATATTTGTTCTAGAAAATTTTCTAGTTCTTACAGTTTAAAGAGTCACGAAAAAATTCATTCTGGTGAAAGGCCTTATAAATGTGATATTTGTCAAAAGAAGTTTGCTCATTCACATGTATTAATAAATCATAAAAGAACCCATTCTGGAGAAAAACCATTTAAATGTGAATTTTGTGAAAAATGTTTTACCACATCAGGTACCTTAGTAGCACACAAACGTATACATACAGGAGAACAACCATATAAATGTCAAATATGCCAGAAAACTTTTTCTTTATCGAGCAGTTTAAGTTCACACAAAAGAATACATACTGGTGATAGACCTCACAAATGTAATTTTTGTCCAAAAGCATTTGCAAAGAGTGGTGACCTAGAAAGACATAAACGAATTCACACTGGTGTAAAGCCATTTCATTGCAATATCTGTGATAAATCATTTACACAATCATCAGGCTTAATCATACATAAAAGAATTCATACAGGTGAAAGACCATTTGCATGTGATACTTGCGAGCGGTCATTTACTAATTCAGCTAGTTTGATAGCACATAAGCGAACTCATACAGGAGAGATACCTCATATGCCTCTACATGTTCTTAATACACAACAAATGTCAAATAATCAAAACACTATGCACACAAATATATTCTCAGAAATTCCAACAACGTCAGCAACCGGTTTATGGGACACCAGTGGTCCAACAGCATCAGTTGGTGAATTTAGTTACAGCTGGTCTAATTGGTTTCAAGGAGAATCCGATCCTAGTAATACTAAAGATTCACATCAAGAAATCGGTGAACAGCCCGTGCAATTTATACAGCATAGGGAAAATGAAAGAGAAAACATTGATATTGTGAACACAATAAATGGAGTAAATAAAATTTCAGACAATACTGTTATGCCTATTAAAAAGACAGAAGGTCAATGGTTGGATTGTGATGTATGCCATAAAACATTTCCCTATTCATCCAGACATAAATTAATTGAACACCAACGAATACATACCCGTGAAAAACCATTTAAATGTCTTATATGTCAAAAATCGTTTTCTTTGTCCAATACTTTAATTGTACATAAGAGAATGCACACTGGAGAAAAACCATTTAAATGTGATATATGTCCAAAAGCTTTTGCTCAAAAGTCTAAGTTAAATATACATAAAAGAATTCACACAGGCATAAAGCCATTTCATTGTGATTTATGCCAAAAAACTTTTGCTCATTCCTCAAATTTAGCAAATCATAAGAAAACTCACACTCATGAAAGATCTTATAAATGTGATATCTGCCACAAATTGTTTACACTTGCGAATAGTTTACGAAAACATAAAGTTTTGCATACCGGATATAAACCATATGTATGTGAAATTTGTCATAAGGCATTTGCCAAGAAAGCTAGTTTAGATCGTCACAGAGGTACACATAATGGTGTGCCCCAATGGACAAAACCATTTATACACATTGTAAAAGAAAAACGAACAAGTGACACTGAAAAGCCATTTAAATGTCATATTTGTTTAAAGTCATTTATTAGTTTAAATGGGATGTCTAGGCATGCAGCCAAACATAACGGACAAGATCAATTTCAGTGTGAAATATGTCATAAGACTTTTACTGGTTTTTCACTACTGACTAGACACAAAAGAATACACACAGGAGAAAAACCATTTCAGTGTGACTATTGTCCTAAGGCTTTTGCTTATTCATCAACACTAATAACTCATAAACGTACCCATACTGGAGAAAAACCTTACCAGTGTGATCTTTGTCCCAGAGCATACACACAATCCTCTAGTTTGATAGTTCATAAGCGAACCCATTGGAACCAACAGCCAATTATTAATACATCTAAACCATCAATGGATTTACCACTAGCTGAATCAAAGACAACTCAATATGAATTGCCAAGTACATCAGTAACCGATGATTATACTGATAACTGGTCAAGTTGGTATCCTATTGAATCTGATAATATATCTATCACAAATGAACTGCCACAAATTATGCAAAACCAACCAGGACATACCGAACAAGGACAACCGTTTATCGAAATTACCGTAGACCTCGATGTTAAATTTACGCCACAGAAGTTCAAATGTGCAAAATGTAAAGAAACATTTGATGAAAGTACAATGTTATTGAAACATATTAGAAAAGTACACAGGCCCAAAACAATAAAAGTTAAAATAACGAAGCAAATATCCACATTAAATGATACCACCAAAAAACACAAAAGAAAACGTGGCGAACGCCAACGGTTAGAATGTGACATTTGCCAAAGACCATTCCACGACTCTTATAAATTGAAAGTGCATAAACGAACTCATACCAGAGAAAAGCCATTCAATTGTGATATTTGTAATAAATCTTTCATAGATTCGTGCAATTTAAAGGAACACCAGAAGGTTCACACCGGGGAGAAACTTTTTGAATGTGATATTTGTCAGAAAAACTTTCTGCAGCTGGGCACGCTCACCACCCACAGACGCACACATACTGGTGAAAAACCGTATAACTGTGACATATGTCAGATGCCATTCGCATTACTGAGCAGCATGAAAACCCATAAACGACGAGCGCATACTGGTGAAAAGCCCCATAAATGTGATATCTGCCAGAAGGCGTTTGTCAAGCGCAATGATATGATACGTCATCGTAGAACACATACTGGAGAACGTCCGTTTGTGTGTGACATATGTCAAAAATCATTTACACAATCGTATGTACTGGTTTTACATAAGAGAAATCATCATTCAGGTGACAAACCACTTACAGGAAATCGTAAGGGTCCTCTAGTACTAAAACGGACCGTGCCCAAGGAAAAACTATTTAAATGTGATATTTGCTTTAAATCATTTGCGAGTCAGTCAACATTAAATACACACAAACGTATCCACACTGGGGAAAAACCATTTCAATGCGACATGTGCCAGAAATCTTTCACCCAATCATCTGGACTCATGGCTCATAAAACAAACCATCATCCAGTGAACAAATTATTTCAACAAGAAACTATCCCACAGGAATTTAAATTTATGAATACAACAAATACTGCTGACGATAAACAATGTGAATGTGGCGTTTGTCAATCATCATTATTTGGTCAACCCCCCATTATTAATTTTAACCAGCCTATAATGGCTGATAGGAACATGTTTTATGTATGA
Protein Sequence
MTERSEEMVDDESFQNPSESMHFEMVEGEEETILPKEYICNKCNIIYYKRSEIVKHLKLSYCEKTPSVIDQVVPIIKKLPGLSKCKRSFQYKRYQCEICSKHFSNKTKLTHHTRIHNGEKPFHCNICSRKFSSSYSLKSHEKIHSGERPYKCDICQKKFAHSHVLINHKRTHSGEKPFKCEFCEKCFTTSGTLVAHKRIHTGEQPYKCQICQKTFSLSSSLSSHKRIHTGDRPHKCNFCPKAFAKSGDLERHKRIHTGVKPFHCNICDKSFTQSSGLIIHKRIHTGERPFACDTCERSFTNSASLIAHKRTHTGEIPHMPLHVLNTQQMSNNQNTMHTNIFSEIPTTSATGLWDTSGPTASVGEFSYSWSNWFQGESDPSNTKDSHQEIGEQPVQFIQHRENERENIDIVNTINGVNKISDNTVMPIKKTEGQWLDCDVCHKTFPYSSRHKLIEHQRIHTREKPFKCLICQKSFSLSNTLIVHKRMHTGEKPFKCDICPKAFAQKSKLNIHKRIHTGIKPFHCDLCQKTFAHSSNLANHKKTHTHERSYKCDICHKLFTLANSLRKHKVLHTGYKPYVCEICHKAFAKKASLDRHRGTHNGVPQWTKPFIHIVKEKRTSDTEKPFKCHICLKSFISLNGMSRHAAKHNGQDQFQCEICHKTFTGFSLLTRHKRIHTGEKPFQCDYCPKAFAYSSTLITHKRTHTGEKPYQCDLCPRAYTQSSSLIVHKRTHWNQQPIINTSKPSMDLPLAESKTTQYELPSTSVTDDYTDNWSSWYPIESDNISITNELPQIMQNQPGHTEQGQPFIEITVDLDVKFTPQKFKCAKCKETFDESTMLLKHIRKVHRPKTIKVKITKQISTLNDTTKKHKRKRGERQRLECDICQRPFHDSYKLKVHKRTHTREKPFNCDICNKSFIDSCNLKEHQKVHTGEKLFECDICQKNFLQLGTLTTHRRTHTGEKPYNCDICQMPFALLSSMKTHKRRAHTGEKPHKCDICQKAFVKRNDMIRHRRTHTGERPFVCDICQKSFTQSYVLVLHKRNHHSGDKPLTGNRKGPLVLKRTVPKEKLFKCDICFKSFASQSTLNTHKRIHTGEKPFQCDMCQKSFTQSSGLMAHKTNHHPVNKLFQQETIPQEFKFMNTTNTADDKQCECGVCQSSLFGQPPIINFNQPIMADRNMFYV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-