Basic Information

Gene Symbol
JARID2
Assembly
GCA_013282895.1
Location
scaffold:36498968-36515989[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.2e-20 6.6e-17 62.3 0.0 6 89 1540 1621 1536 1621 0.93
2 2 1.7 9.3e+03 -2.3 0.0 52 66 1636 1650 1630 1672 0.75

Sequence Information

Coding Sequence
ATGTCTTCGAACGGGTCGGACACAAAGAAACGCAAATTGCTGAATAATGAAGAAACCATTCTTGATTCGAGTACTAAAAAAATCAAGGTACAAGCACAGCGTAAATTTGCTCAAAATGCAGTAACACCTACTAGCACTCCACAGAAACCTATTCAAACTCCAGTGATATCTAATAATGTTACAAAACCACCAATAAGACGACCAAATACTGAAGACTTCCTTACCTTTCTTTGTTTTAGAGGTACAAGTTTATTGCCTGCACGGTTAGATTTTTTTAATAAGCCTCAACGCTCTCTATCAGCTCAAGAGATATCTGCTGGAAAAAAAAGAAGAAAGAGTACTCCTATACTACCAGTGAGTAATGTAAATAATGAACAGAGTGAAAGAAAAAATATTCAAAAGTTATCAAAGACTAAGTATCCAATACCTAAACTAGGACAAAAAGTTATTGGTCGAAATTTAATAAGATCCAGCTCAAGGTATACCGTTAGACAAGAATCTCGTACTCTGCGCCAATTGGCCCTACGTCATGGATCAAAATTAATTAAACAAAAGCAAAAAGTTAAAAAGCCTACAGCTGAAGAAAATGTTAATAAGCAAACAAAGAAAAATGGAAAACAAGTGTCATTAGATGGTAAACAAATACAAAAACTGAAAGGCCGTGTAACTCGATCCAATTCTTTACCGAGTATATTTTGTCCTGCGATAAATCAACTTAGGGATGACAAAGGTAAATGGTGTAAGGGTGGTAGTAAATCTTCTTCAAAAACATCCGAGGATTCAAAAGATTCAAAAGATATTGAAGAAGAAAGACTATCAAGAAAAAAGACTGTATCTAAGAATTTAGATCATAGAAGTAACAGTCTTGTTAACTTTAAACGAAAGACTAGTGATGTTAAGTGTAAAGTAGTAAATAAAAATGACAGAAAAACTAGAAGTTTAGTGAGTAAAACTAAGGGTAGCGACCAAGACAATTATGTTGTTCCTGAAAAGAAGTGTGATAAGAATTTAAAGACTGTATCTAAAAATAATAAATCAAATAGTTTGATTGAAACAAAATTATCAGTTGAAGTGAAAAGGAGAACCTCTTCAGTGGATAACTCGAGAACAGTTTGTGAAAATAAAGATACCATCAGTTTAACTCGTACAAGGCCTCCAAGAAAAACAAAAGAAGCTGCCACTTTATTTATGGAAATGTTACGAAAAGATATGCGGTGCCCTGATGAGCAAGAGGATGATGATTCATCATCAGTAGAAAGTTTTCCTGAATTACCCAATACACGAATAAATGAACAACGTGAACGTGAATTGAAAGTGTTATCAACGAAAAACAAGATTGGAAATTTCCAGAATGATAAACGGCCATTAGAAAATATGGATGATAAGTCTTTATTAACAATCTTAGATAATAAAAAAACTATTGTAGTGAAAAAGAAGTTTAAAGAGAAGAAAAAAATAGAAATGAAAAGTACCACAAAAAAAAAAATTAAAGAAGTGGTGGATTTTGTAGGCATTGATGAAAATAGTGGAACTCTATCATACAAGAGGAATCTAAGACCTCGTCGTTCTTCTACCATGTTGGACGATTATATCATGACTGATTCAGAAGAAGAAGTCTATGATAAATTGAAACCCGTGACAGAAGTAAAAAAATACGAAGCCCCTACTAAACCATCTACCAGAATAACAATGCCGGGGCACTCAAAATCTCAAAAAAGTAAATTAATCGCGGAGGAATCTGCAAAAAAAAAATTAAAAATCAATAATAAGACTGACTTGAAACCGAAAAAAGATTTAGATAAAATAGATTCAGAAGTGAAAAAGAGTCTTTCTGAAACTAAGTCAAAATGTATTTTATTAAAACGTGACAAAGAGCCTGAAATCAAGAATATTAAAAAAACTGCTGCCGATAAGAAAACTGAGAAATCGTCAAAAAATAAGACTGAAACTGTAGTAATTACTAAGGAACTGAAAACTACCGGTGATGGTTTTAAAAATGCCGGGAAAAAAGTGCCACTCCCCAATAATAATAATAATAATAATAATATTATCAATAACAGTAAGCAACAATCAGATGTGAAGAAGGAAAACGCCTTGAACAAGAAAAAGTCCAACTTGGATTTGTACAACAACAACAACAACAAAAAACATGCTGTGTCATCTTCGTCTATGACTCCAACCAAATTAAGTGGCATCACTAGTCAAACAAAAGAAGATCTTTTGGACAAAATGGCTGCAATTTTTGATGGCAATAACGCTATTGTAGCAATTAGAGAAGACCATAAATTTGATGTTGATGATACTAAAACGATGTTAGTGATGACTACAGAAAAAGAAATCGTGAATGGTGAAAAAGTTACAAATAATGATATGGTAACAACGATAGTATCGCAGAAAAAAGATTCAAAACAAATTGTATCAAAAACAGAAAGCATAGCAGCCACTGTAATGGTGGCAAAAGAAGAAAATGTTGTTACTGACAGTATTGGAAAAATTGAAAACTATTTCGTTGTAGATAAGGTAGAGAAAACTGAATCATTGCAAATGATGGTTCAGCCATTCGTCAACAAGGTGGAAAAAGTCGAAAATATCATGTATCAGACATTAACCGGCAAAGACGGAGATCAGCTATTTTTGAAAACGAAAGACATCAACATCAACGTTCCAGAGTTTTTCACTGACAAGAATTTTCAGCTGCCTAATAGATTCAAACAAGATGATGGGCTGTCTGTGTTATCCGAGATCTGTAGTGCCTTGCCTAGGTTCGACGAACCGTTCGTGTCTAGCCGGCAGTTGTTAAATGATAATTTGCCAATGTCTGTCGCCGGCGAAAAAAGTTTTGTCAAGTACACACTGCCAACATCGACCATTAATGAAGATGAAAAGAAACTAGAGAAACCATTGATGATTATTCCGTCTCTACCACCGTTGCCACCGTCGTTCGAAAGTCGTACTGTAAAAATCGTTAATTTGGCTCGAGGAAGTAACAATACCAGTGCTACCATAGCTGCGGTTGTTGGGATAAATGACAAAAAGGATTTGGCTACTTCGTGGCGACAAGCTTTTAAAAACGTTAAATTACCAAAGAACGGACTCACATCTGCTGCTGTTTCAGTAGGTAACAATTTGATCGCGTGGACCAAGAAAAAACAAACAAATGACAATTGTCAAACACTTTTGTCACATCAGAAAACTTGCGTCGCTATTAATGTTAATGAAAAAGAAATTGCAGTTGTTGATGATTCAGCAAAAACAACCGCTACCACTATTTCGTCTGTACAAGCTAATGACACTACGGAAAAGAAAACTGCTTGTGTTGATTCCAAAACTGCATCTGTTACTGAAATGTTTGACAGCAAAAAGACAAATGCATCCTATTTGGCCAAGACAACCATACTGAGTAGTACAAAATACGATTTAAAATTCGAAAAACGTTCTTCTGCGTCGTTGACAGCAGTTGCGACTGCAATGCCAATGGTCGGTGTGGAAAAACTTCATCGTAAAGATGTCAATGGTGATGTTTCATCTTCAGATGATCAAAGCCCAGAAAAGAAGATCTTCCATCAGCGGCGTTTGTCCACCACACAATCCTGTAGTGGGAACAGTTCTGATGCATTTTCGGCTGACAATGAGACTAGTGTTTATGCTTTCCAACCCGACTTACCGGTGGCTAGTGCTCCATTCCGTCGGAACAAACCACAGTCTCCTGCCAAATCTAGGACAGTTTCACCCAACACGTCCATTGCTGTGAGTATCGAAAATGACTCTATGGAGGATAAATCACTTCAATCCACTGTGTTGTCGACAACAGACGTAGATAGTGAAGAAGGACGACTGTTCTACATTCCTTTGCCAGCTGGTGTTCAGGCTCAACCATTGATTCAGGGTGTCACGGTCAAACTAGGAACTGAAGGTCCGCAAAACAAATTGGTGATGAGTGCCAAACTTGTGACAAAACCTCCAGCATCCACAATACCAGTTAGTTCCATATCACCGAAACCAGAACGAAAAATCAAGCCTTTATGCTCAAACAAAATTACCAACAGCCTAACTCCTGTTGGTACTGTGCAACCGACTACTCGAACTGTTCAGCCTCCTAAATGTACTCCCTCAACTTCGAAACAAGTTTTACCATTACCATCATCACCACAAATTTCAGAAACAAAAGACGAAAAAAAACGGTCACATAAAATTACTCCTACTACAACTACTGCCACTAATATTAATAGTACTATTGAGGAATTTAAAAAAAAATCGGCCTTATCATCTTCGTCATCATCTGTTTCTATTGCCAATAAAAAGAAACAAAAAAAGACTGAAAAAGAAATAAACAACAAAAGAAAATCTAGCGAGAAAGTAGCTATGAAGAAAAAGTCATTGAAAGAAACTGCTGAAATGATGGATGCGCCAACGTTTTATCCATCTGAAGAAGACTTTAAAGATCCACTGGAATATTTTGAAATTATTAAGCCTGTAGTTCAAAAATATGGCATATGTCGTGTGGTTCCACCATCTAGTTTCAAGCCAGAATGTAAGGTCAGCGATGACATGAGGTTCACTGCATACAACCAGTATGTTCACAAGATGATGAACCGATGGGGACCTAATGTCCGTGAAATGATGGCTATAAAAAAGTATCTGGAAACACAATCAATTGTCTTGTCTAATCCACCACTCATTGGTGGTATGGAATTAGACTTACCAAGATTGTACCACACAGTTCAAGAGCTTGGCGGTCTTAAAGAGGTTATTGAATTGGACAAATGGTGCCGTGTCGCTGACTTAATGAAGATACCAAAGAGTGCACAAGATCGTATTACCAAACTTGATGATATATATTGCAAATATTTGTTGCCATATGACACACTTTCACACGAAGAAAGACAAAAGTTAATTACCGACGTAGATAAAGAATGGAAACAGATCTGTAAAAAAGGTGATATAGATGATGAATTATATGAAGATGTCAATGATTGTATAACAAAGGGCCGAAGTATCGCGTTAAGTGCATATTATCGGGTTGCACGTAACACTATCGCTATGTGGTTTAAAGAACAGCAACAACAACAGCCCCATCACAGTAATAGCCACTCAGCATCAGCAGCAGTAAACACCAAATTAGGTGCAGCCTCAATCTGTGCCGAGGATGTAGAGTCATTGTATTGGAAACAGGTTCAAGAGAAAAAGAATCACATATGTGTGCTCTCTGGTTCGATTGATTCAGGGGCCGAGGGCTATGGATTTCCTACCTCAAAGACTGCCACATTCACTAAACATCCGTGGAACCTGAAGGTGTTAACTAACAATGTGGTATCAGTGCTAAAGTCGCTGGGTCCAGTGATGGGTATGACAGTGCCTACCATTCACATGGGCATGGTATTTTCAGCATGTTGTTGGTACAAGGATCCTCATGGACTTCCTTGGATTGAGTATTTACATACAGGTGCTGAGAAAATATGGTATGGTGTACCTTATGACCAAAGTGACCGTTTCCGAGCAGCCATGAAGCGATTGCTACCACAAGCTGTGGCTGAAGGCCAAAACCATCATACGTGGCTGGCTGCAGATAGTGGCATGGTACCTCCTGACAGATTGCTTGAACACGGAGTATCTATTACACGGACCGTGCAGTCCCCAGGACAGTTCTTGATTGTTATGCCACGCGCGTTCACATGCAATGTGTCCACTGGTTATGTGATTTCAGAGAGTGTCTACTTCACACAATCTGGTTGGCTTGATAATGCAGAAAAAATTTTTCAAGACTTGCAAAGAAATTGTGAACCGGCTGCTTTCTCATTTGAAAAGTTACTGATAAATATGTCTACTGATCCACGTACGCCTCGAAATTTACTTAAACAGTTGTTAAATATATTGAGTAATATGAGAGATTGTGAAGTGGCGCTCAGGAGTCAGCTGGTTGAGGACTTAGGCTTAAATGCATCTGAACGCATTAAGTCTGACACTGCTACATCTAAGCCAAACGAACAAAACGATGACTATGAGTGTGACGTGTGCCATTCAATCCTTTACATATCAATGGTGAACAATTCTCATGAAGACTGCGACTATTGTTTAAGACACGGCATTGAAATTTTGTCAAAGAAACACAATCAACTCAAGTACTTCAAGTTTCTGTATAATTTTGATGAAGCCGAGTTGGATTTGATCTTGGTAAAACTTCGCGAGAGGATTGACTCTAAGAAAAAGAAGACTTCTACTAAAAGTAGTGCTAACAAAGTATGGTATGGTATGCCATATGACCAAAGTGACCGTTTCCAAGCGGCCATGAAACGATTGTCACCACAAGCTATGACTGAAGACCAAAACCATCATCTGTGGGATGTGGCTGGCGTTTACATACGTTTACCTGAAAACTTTCTACTACAACTGTCAATAAATGCATCGCATCTCAATCGCTAG
Protein Sequence
MSSNGSDTKKRKLLNNEETILDSSTKKIKVQAQRKFAQNAVTPTSTPQKPIQTPVISNNVTKPPIRRPNTEDFLTFLCFRGTSLLPARLDFFNKPQRSLSAQEISAGKKRRKSTPILPVSNVNNEQSERKNIQKLSKTKYPIPKLGQKVIGRNLIRSSSRYTVRQESRTLRQLALRHGSKLIKQKQKVKKPTAEENVNKQTKKNGKQVSLDGKQIQKLKGRVTRSNSLPSIFCPAINQLRDDKGKWCKGGSKSSSKTSEDSKDSKDIEEERLSRKKTVSKNLDHRSNSLVNFKRKTSDVKCKVVNKNDRKTRSLVSKTKGSDQDNYVVPEKKCDKNLKTVSKNNKSNSLIETKLSVEVKRRTSSVDNSRTVCENKDTISLTRTRPPRKTKEAATLFMEMLRKDMRCPDEQEDDDSSSVESFPELPNTRINEQRERELKVLSTKNKIGNFQNDKRPLENMDDKSLLTILDNKKTIVVKKKFKEKKKIEMKSTTKKKIKEVVDFVGIDENSGTLSYKRNLRPRRSSTMLDDYIMTDSEEEVYDKLKPVTEVKKYEAPTKPSTRITMPGHSKSQKSKLIAEESAKKKLKINNKTDLKPKKDLDKIDSEVKKSLSETKSKCILLKRDKEPEIKNIKKTAADKKTEKSSKNKTETVVITKELKTTGDGFKNAGKKVPLPNNNNNNNNIINNSKQQSDVKKENALNKKKSNLDLYNNNNNKKHAVSSSSMTPTKLSGITSQTKEDLLDKMAAIFDGNNAIVAIREDHKFDVDDTKTMLVMTTEKEIVNGEKVTNNDMVTTIVSQKKDSKQIVSKTESIAATVMVAKEENVVTDSIGKIENYFVVDKVEKTESLQMMVQPFVNKVEKVENIMYQTLTGKDGDQLFLKTKDININVPEFFTDKNFQLPNRFKQDDGLSVLSEICSALPRFDEPFVSSRQLLNDNLPMSVAGEKSFVKYTLPTSTINEDEKKLEKPLMIIPSLPPLPPSFESRTVKIVNLARGSNNTSATIAAVVGINDKKDLATSWRQAFKNVKLPKNGLTSAAVSVGNNLIAWTKKKQTNDNCQTLLSHQKTCVAINVNEKEIAVVDDSAKTTATTISSVQANDTTEKKTACVDSKTASVTEMFDSKKTNASYLAKTTILSSTKYDLKFEKRSSASLTAVATAMPMVGVEKLHRKDVNGDVSSSDDQSPEKKIFHQRRLSTTQSCSGNSSDAFSADNETSVYAFQPDLPVASAPFRRNKPQSPAKSRTVSPNTSIAVSIENDSMEDKSLQSTVLSTTDVDSEEGRLFYIPLPAGVQAQPLIQGVTVKLGTEGPQNKLVMSAKLVTKPPASTIPVSSISPKPERKIKPLCSNKITNSLTPVGTVQPTTRTVQPPKCTPSTSKQVLPLPSSPQISETKDEKKRSHKITPTTTTATNINSTIEEFKKKSALSSSSSSVSIANKKKQKKTEKEINNKRKSSEKVAMKKKSLKETAEMMDAPTFYPSEEDFKDPLEYFEIIKPVVQKYGICRVVPPSSFKPECKVSDDMRFTAYNQYVHKMMNRWGPNVREMMAIKKYLETQSIVLSNPPLIGGMELDLPRLYHTVQELGGLKEVIELDKWCRVADLMKIPKSAQDRITKLDDIYCKYLLPYDTLSHEERQKLITDVDKEWKQICKKGDIDDELYEDVNDCITKGRSIALSAYYRVARNTIAMWFKEQQQQQPHHSNSHSASAAVNTKLGAASICAEDVESLYWKQVQEKKNHICVLSGSIDSGAEGYGFPTSKTATFTKHPWNLKVLTNNVVSVLKSLGPVMGMTVPTIHMGMVFSACCWYKDPHGLPWIEYLHTGAEKIWYGVPYDQSDRFRAAMKRLLPQAVAEGQNHHTWLAADSGMVPPDRLLEHGVSITRTVQSPGQFLIVMPRAFTCNVSTGYVISESVYFTQSGWLDNAEKIFQDLQRNCEPAAFSFEKLLINMSTDPRTPRNLLKQLLNILSNMRDCEVALRSQLVEDLGLNASERIKSDTATSKPNEQNDDYECDVCHSILYISMVNNSHEDCDYCLRHGIEILSKKHNQLKYFKFLYNFDEAELDLILVKLRERIDSKKKKTSTKSSANKVWYGMPYDQSDRFQAAMKRLSPQAMTEDQNHHLWDVAGVYIRLPENFLLQLSINASHLNR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-