Epel004115.1
Basic Information
- Insect
- Ericerus pela
- Gene Symbol
- -
- Assembly
- GCA_011428145.1
- Location
- WOFM01000094.1:1-4324[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.001 0.18 13.2 0.7 2 23 150 172 149 172 0.95 2 13 7.7e-06 0.0014 19.9 0.5 2 23 218 240 217 240 0.93 3 13 0.2 35 6.0 1.8 3 23 256 275 255 275 0.96 4 13 0.00015 0.026 15.8 0.8 2 23 282 304 281 304 0.96 5 13 2.3e-06 0.00042 21.5 2.7 1 23 310 333 310 333 0.97 6 13 0.00048 0.085 14.2 2.3 1 21 347 367 347 368 0.94 7 13 3e-05 0.0053 18.0 2.3 1 23 393 416 393 416 0.97 8 13 7.3 1.3e+03 1.1 4.8 1 12 432 443 432 455 0.81 9 13 0.009 1.6 10.2 0.7 3 19 467 483 466 483 0.94 10 13 0.97 1.7e+02 3.8 0.2 2 23 492 514 492 514 0.91 11 13 0.0027 0.48 11.9 2.4 1 23 520 543 520 543 0.95 12 13 0.00088 0.16 13.4 3.0 1 23 549 572 549 572 0.98 13 13 2.6e-07 4.7e-05 24.5 1.2 1 23 578 600 578 600 0.98
Sequence Information
- Coding Sequence
- GCTAACAATTCTTCTATACCACTATATGAACTTGACTCTGATGATGAACCTACTTTGGAATTGAGACAGTTAGACGAAGAAAATTCTGAACGTGATGTCAGTAATCTTACTGACGATATTGAagttattgaaattaaaatcaatgaGGACGAAAATAGTGAGATGGATGCCGAAGAATTGTACGATGATTCGTCGTGTACAGAAGACGTTTTCGATGACATAGCGAATATTCATATTCAAGAAGACACACCTTACCTTCCTCCATTAGACGGTTATCAAAACGTTTCagtgaaagatgaaaaattggACTCCGAAGAAATGGCTATTTTACAACATGATCTCAATACTAAAGTGAAAGATTCAGTCGGTGAAAATGAGACAGAAAAAACAGTCGAGCAACCGTCGTCacgaaagaatgaaaatttcaataagatTAAAAAGTCCACTGTTTGTCGTATTTGTGGAAAATTATACGTAACTCGAACCAGTTATTTGCGTCACTTGTTGAAACAGCATAGCAATCACACGTCAGTGAAGCCACGTAATGTATCAGTCAAGAGTATGGCCAGCGAAAAGAAAATGGTTGCGAATGAAGATtctcatcaaaaacaaaaaaggtctCATGGATCCAAAGAAGAGCCATCTCGCATCATGTGTGACGTTTGTGGTAAAACGTTTCGTTTCGCGTCTAGTTATCGAAAGCACGCGCGTGACTACCATTCGGACGAACCACCTAAGCCGAAACCATTGCGTTCCAGACGTATGTGTGACCTATGCGGCAAAATATGCAGTGGTGGTAGTTTCAAAGGACATATGAAAAAGCACACGAACCCTGAAAGTGTGACGTGTCCACATTGTGGTCAGCTCTTCTCGTTTGAGTCCGTCCTCAAGAGCCATATTAAGGTGCGCCACTCAAACGAGAGACCCTTCCAGTGCAAGCTGTGTGATAGCAGTTTTAAGCGCGCCGATTACCTACGCTCGCATATGCGCTACAAGCACGAGCCAAAATTGCTGCGCAGTGAAGAAAAATCGTTTCCGCATCGCTGCAACGATTGTGACTCTACTTTCAAAAACCAAGAGGCGTTGGACAAGCATCACAACTACAAGGCGTTGGCTGGTGGCGTGGAAGGCGCTGCTGGTGGGGCCACTACCTGCGAGCGCAAATGCCCCGCCGTCTTCCGCTGCGATGAGTGTCAGATCTCGTTCAGGCGACGCAATTACTTGACGCTGCATAAGCGCTATGTGCACGACAAGCAACAGCCGTTCCGCATCAGTGAAGCTTCCGTGGGTCCGTATAAGTGCGACCGGTGTGAACGACGCTTCGCCTCAGTATGCGGACGCAATTACCACTGCAAAAGCGTGCACGGCTGCCTGTATGAGACGAAGTTTAGCGAGATGTGCGACCATTGTGGACTGACCTTCCGAAATCGCGTATTCTACGCGAAGCACTGCGCGAAATTACGCGACAAGCCCACCTGTTACCTGTGCTGGAGTGCGTTCGACGAGGATGCCGCCCTCAAGCAACACATGCACGACGTACATGTCGACGATTTGCCATTTTTGTGCGAACTCTGTCACAGTCGGTTCGTAACGATGCGCCAGCTTACCGACCATATTCGTTCAAGGCACGCCAAAATACGACCCTTCAAGTGCAGTTATTGCGCGCATACGGCCGTGCGTAAGGATTCGCTCGAGGTGCACATACGCAGCTGCCATTTGGGCCAGAAACCGTTTAAATGCGATTTGTGCGAGAAAGCGTTCTCGCAGTCTAGTGATTTGCGTAAACATCGAGTGACACACACGAGAAATAAGCTGACGCacgtaaaaaagaaaaaaatacagttAGAAGAACCATTTGTCGCGGTGGACGTTAAATTCGAGACAACTGACGCGGACGCTAAATTCGAGACAACCGATGCGGACGCTAAATTCGAGACCGCCtga
- Protein Sequence
- ANNSSIPLYELDSDDEPTLELRQLDEENSERDVSNLTDDIEVIEIKINEDENSEMDAEELYDDSSCTEDVFDDIANIHIQEDTPYLPPLDGYQNVSVKDEKLDSEEMAILQHDLNTKVKDSVGENETEKTVEQPSSRKNENFNKIKKSTVCRICGKLYVTRTSYLRHLLKQHSNHTSVKPRNVSVKSMASEKKMVANEDSHQKQKRSHGSKEEPSRIMCDVCGKTFRFASSYRKHARDYHSDEPPKPKPLRSRRMCDLCGKICSGGSFKGHMKKHTNPESVTCPHCGQLFSFESVLKSHIKVRHSNERPFQCKLCDSSFKRADYLRSHMRYKHEPKLLRSEEKSFPHRCNDCDSTFKNQEALDKHHNYKALAGGVEGAAGGATTCERKCPAVFRCDECQISFRRRNYLTLHKRYVHDKQQPFRISEASVGPYKCDRCERRFASVCGRNYHCKSVHGCLYETKFSEMCDHCGLTFRNRVFYAKHCAKLRDKPTCYLCWSAFDEDAALKQHMHDVHVDDLPFLCELCHSRFVTMRQLTDHIRSRHAKIRPFKCSYCAHTAVRKDSLEVHIRSCHLGQKPFKCDLCEKAFSQSSDLRKHRVTHTRNKLTHVKKKKIQLEEPFVAVDVKFETTDADAKFETTDADAKFETA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -