Epel013000.1
Basic Information
- Insect
- Ericerus pela
- Gene Symbol
- -
- Assembly
- GCA_011428145.1
- Location
- WOFM01000294.1:748041-749447[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.054 9.6 7.8 0.1 1 21 27 47 27 48 0.96 2 14 0.095 17 7.0 1.3 2 23 51 72 51 72 0.96 3 14 0.00023 0.041 15.3 0.6 2 23 135 156 134 156 0.96 4 14 0.027 4.9 8.7 3.5 1 23 162 184 162 184 0.98 5 14 0.00037 0.067 14.6 2.6 1 23 190 212 190 212 0.97 6 14 7.9e-05 0.014 16.7 2.0 3 23 220 240 218 240 0.98 7 14 0.061 11 7.6 0.8 3 14 248 259 247 267 0.85 8 14 1.5e-06 0.00027 22.1 1.1 1 23 273 295 273 295 0.98 9 14 0.0002 0.036 15.4 1.5 5 23 303 321 301 321 0.94 10 14 1.2e-06 0.00022 22.4 0.8 2 23 328 349 327 349 0.97 11 14 2.2e-05 0.0039 18.5 0.2 1 23 355 377 355 377 0.92 12 14 2.7e-07 4.8e-05 24.5 1.6 1 23 383 405 383 405 0.97 13 14 2.8e-07 4.9e-05 24.4 1.8 1 23 411 433 411 433 0.98 14 14 0.1 19 6.9 2.8 1 21 439 459 439 462 0.87
Sequence Information
- Coding Sequence
- atgaaaaactcaaTTCAAATTCAAGATGGTCGTGCTGAGGATAGCGTTTTTGATGTAATGGCTGAGGACAGCAATACCTTTACATGTCTCTTTTGCAACGATATATTCGATGAAGAAGAAGATCTGCAGCGCCACATTAAAGAAGTACGTGAATGTGAGCAATGTAAAGTATGGTTTTGTGACGAAAGTTTATTCATATCACACCGTAAAATTCACGTGAAACCTCGTGTATCTCAATCAGAAATTGAAATAGATGAGATTGTAGAAATATCTGAGTTTTTGAATTCTCAGTTTATTGAAAATCAATGTTTATTGCAAGTTTCATCTTCACAATCTGGACCATCATTAGTAGAAACCGTTCAACATGGAAGTGAGGCGAACAGTGTTGACGAATCTAAATTACAGTGCTCCTTCTGCAATCGACTGTACCGTGACAAAGCCAGTTTGAGAACTCATATTCTCGCTCACATGAATGGTAAGAAGTACAGATGTGAGATATGTAAAAAGGAATACTTATACCGCAAAACGTTTGAACTGCACAGAAAGAGACATTCAGGCGAGGGCATATTTTCATGTCCACAGTGTAACAAACAGTTTTATACGCGTTTGAAACTCCAAATACATTTTAAATTGCATACAAATGAGAGAAATTTTGGCTGCACACTGTGTGAAAAGAGGTTCGTCAGCGAACATAGTCTGAAGCAGCATATTTTACGCCATAATGCTGAAAAAACAGAATTCTGTAATAtatgtgataaaaattttgctCGCAGTTATTTTCCTATTCATCGACGATTTCACTCGGGCGAAAAACCGTTCAAATGTAGCGTCTGTGGCAAATGCTTCGTTCAGTATGCCGGCCTGTGGGATCACCGAAAGGTTCATAAAAACGAGAAATACGTCTGTACATGCGGCAAATCATTTTCGCGCCTAACTGAATTGAAAAAACATTCGAAACTGCACACCGGTAAAGGATGCATGTATTgtaattattgtgaaaaaccaTATACGTCTAAATGGCTGCTACAAAATCACTTGCGGACTCATACCGGAGAGAAGCCGTTCATTTGCAGCGTCTGTGGGGCCGCATTTTCTCAACAAGCCAATCTAACAACGCATTCGTTTCAGCACACTGGAAATAAATCGCATTCCTGCGAGTACTGTGGTCGTGCTTTTAGTACGAGGCCAAAATTACGAACGCACATTCGTATCCATACTGGAGAAAAACCGTATTCGTGCAAATACTGCGATAAATCGTTTGCACAAATGTCCACGTTAATCACACATACGCGTTCTCATACGAATGAAAGACCTTACGCGTGTCAGTGTTGTGAACTGCGATTCACTCGAAAGCAGTTTCTCATGAAGCATATCGGTGATAAGCATATCGAAGAATGTTACGAGTGA
- Protein Sequence
- MKNSIQIQDGRAEDSVFDVMAEDSNTFTCLFCNDIFDEEEDLQRHIKEVRECEQCKVWFCDESLFISHRKIHVKPRVSQSEIEIDEIVEISEFLNSQFIENQCLLQVSSSQSGPSLVETVQHGSEANSVDESKLQCSFCNRLYRDKASLRTHILAHMNGKKYRCEICKKEYLYRKTFELHRKRHSGEGIFSCPQCNKQFYTRLKLQIHFKLHTNERNFGCTLCEKRFVSEHSLKQHILRHNAEKTEFCNICDKNFARSYFPIHRRFHSGEKPFKCSVCGKCFVQYAGLWDHRKVHKNEKYVCTCGKSFSRLTELKKHSKLHTGKGCMYCNYCEKPYTSKWLLQNHLRTHTGEKPFICSVCGAAFSQQANLTTHSFQHTGNKSHSCEYCGRAFSTRPKLRTHIRIHTGEKPYSCKYCDKSFAQMSTLITHTRSHTNERPYACQCCELRFTRKQFLMKHIGDKHIEECYE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -