Epel011106.1
Basic Information
- Insect
- Ericerus pela
- Gene Symbol
- -
- Assembly
- GCA_011428145.1
- Location
- WOFM01000250.1:28202-32308[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 8.6 1.5e+03 0.9 0.0 5 13 35 43 33 44 0.87 2 20 0.098 17 7.0 0.6 2 23 185 206 184 206 0.94 3 20 0.00013 0.024 16.0 1.4 1 23 242 264 242 265 0.95 4 20 1.4e-06 0.00026 22.2 1.0 1 23 330 352 330 352 0.98 5 20 9e-05 0.016 16.5 0.4 2 23 392 413 391 413 0.95 6 20 0.0029 0.53 11.8 2.2 2 23 426 448 426 448 0.96 7 20 8.9e-06 0.0016 19.7 1.4 1 23 490 513 490 513 0.93 8 20 3.2e-05 0.0056 18.0 1.4 1 20 532 551 532 553 0.94 9 20 0.35 63 5.2 2.9 1 23 581 604 581 604 0.92 10 20 0.00017 0.031 15.6 0.6 1 23 635 657 635 657 0.96 11 20 0.00072 0.13 13.7 0.9 1 23 713 735 713 735 0.95 12 20 0.017 3 9.4 1.5 1 23 764 786 764 786 0.97 13 20 0.0074 1.3 10.5 0.0 1 23 816 838 816 838 0.98 14 20 5.6e-06 0.00099 20.3 0.7 2 23 869 890 868 890 0.96 15 20 0.0049 0.88 11.1 1.8 1 23 905 927 905 927 0.95 16 20 5.6e-05 0.01 17.2 3.6 1 23 993 1015 993 1015 0.97 17 20 9.8e-05 0.018 16.4 0.7 1 23 1052 1074 1052 1074 0.97 18 20 0.16 29 6.3 0.9 1 23 1132 1154 1132 1154 0.94 19 20 0.11 20 6.8 2.8 1 23 1179 1202 1179 1202 0.93 20 20 0.00091 0.16 13.4 6.6 1 22 1235 1256 1235 1256 0.95
Sequence Information
- Coding Sequence
- ATGTTGGTGAATGGTGtgtctaaaaacaaaaagaacgtGTACCCTCCTTCAGGACTCAAAAAAGAAGATGAACCGCTTGTTAACAGCGAAAAAGCTACCATTGACTGCGACAAAACCTTTGTTAGCAGTGAAATACCTTCAGAAAACAACCCCAAATTCGGAGTGAAAAATGAACCTAATCAAACTGCTGCTATCAGTTCCACTgagtttgaaaatgaagcagACGAAAAATGCTCTGTTGACGAGAATAGCTTCGAATTACGTATCGATAATGACGAAGATGAAGACCACAACCAGATCATTGAAAGTACTTTGAATCCGAAATTAGGCTGCGACAGTGTGCATATTAAGGGTAAGGAAAAAGAGCGCTCGTGTAGCGTGTCCAGTTCTGAAAATGCCCGTAGCAGTCGTAATCCTTCTACAAACTCTCgggaaaatatcaaaattcctgACACGATCAACAATAATGATGACAGTAAGGTTAACGAAACGGTGACCACGAAAAGCTCAGTGGTGCCCAGCAGTACCGTAGAAAGTCTACCAACCCCGGTCAGTTGCGCATTCTGCGAGAAACAGTTCCCGAGtaaaaatagtttgaaatttCACGTTTTGTCGCACCTAAAATCGTTCTTAAAACAAGACAAGAAGGAAAATTCTGCGATGTTGGATGCTGAGCATGAAGAAGGCGCTGTGGAAATTGTCGATGGTGACACATCCTCGGATTATGCGTGTGTGTTTTGTGAGAAGTCGTTCCCCAACAAGATCACTTTGACTGTCCACTACAAGGTTCACCACCAAGCCGATTCGCAGAAAGTGCTCTCGCAAAGCAACAATCGCCGTCCATTGACAACGTCGTCAGCCGTGCCATCTGATTCCATTAGATTGGGTGATGCTGCAGATGTGCCTGCCGTAACTAATATCATCGGCAGCAGTTCTGCTAGTGCGAGTATTCAAGAAAATGGGGGAAGCGAAGACGCCTCAAAACAGTACAAGTGTTACATATGCGATAAGCAATTTGCTCGCAACAGTAGTCTCATGTGGCACATCCAGTTTCACGAGACGTACATGTACACGAAGCTGAAGAAAAGTAACAGTGAACTAGAGAACGTTCTCAACCCAAGTGGTGTTGGGGGTGGTGGTGAATTCCTCTCCAGTGATTCCGACCACTCCCTCCGTTGCCAGGTGTGCGGTAAAACATACGAATCCCTGTCTGGTTATCGGCGCCACCTAGCAAATCATGGTCCGATTGATGATGATGAGGGCGGCCCTGGTGAGAAATGCGAACTCTGCAATAAGCACTGTCCCACAGCTATTGGTCTGAAACGTCACATCATCAGTATGCACAAAGATCAGTTACCTCCCTCGTTAATGTCAGCATCAACGGTTGAAGACATCGATGGTGCCGATGCAGAAACCTCTACGAAAGAAGGTGATGACAGCATCAGCAGTGGCAGCACCAGCGGCGAGTATTTGTGCAATGTTTGCGAGCGTGTCTTCTCTCACCGTAACAGCCTTAAACGTCATATGATTTTGATACACAAGGAATATTCTGATAACACCCAACAACAGCACCGGCAACCACGGACAACAGGATTTAAATGTGATTCCTGTGGCAAGTACTTTTCCACATCTAGCAACATGAGGAAACACGCTTCAAAGTACTGCAAAGGACCACCTGATGCACCAGTAAACGAGGAGGAGGATAATAACACTAACACAAACAAACAGGGTGTGGACGAATTCACTTGCGAATTCTGTGATCGATTATTCTGTAGCCAGCGTGCTGCTAGCATCCACCGTTCATACACGCATCGATTAAATGCGAGTGACGGAACAGTAAATGATACGGCGACGAGTGACATAATTACGAATGACTCGTATGTAGAACTGGATGACGGCTTTTTTCAGTGTACACTATGTGACAAAACGTTTGAATCACGTAAAGGAGTTGTTCGACATATTGGTTATCATAAAAGTGGCGGGTTAACGCTTACAGACACTAGTACTGCCGCCGTGGACCAAGATGACTCTGATGATAGTGTtgaagatgatgatgaagaaaAAATTGAtaacgatgatgatgacgacgatgacgacgaagacgacgacgacgacgacgatgaaaGTAATTCAAGTTACGAATGTCGCATTTGTAGCGAATCATTCCGTAGATTCCGCAGTTATAAAGCGCATCTAGGGTGGCATAGTCGACGTGGCGAAGAAGAAATTATGTCTCCTCGTAAGAAGTCTACCACTTTTTCTAAAAGTATGCCCACCACTGGCAAAATACACCAATGCCAACATTGTCCGCGGTGGTATAATACGCAGCAAGCTTTAGCTGGACACATGAAAGCCCATCAACCTCCTAAAACGCCAACTGGACAGAGTACAGAAACGCCCGGACCTCTGTCTTCCGGTGGAAAAACCGGCAAAACGGGCAAAACGTACGTATGCCAGGTATGTGGCCAACAATTTGTCACCGGTATGGGTTTAGGTGGCCATATGAAAATTCACGCGGTCGAAGGTTCAGTAGTCATACCGGCGGCATCGGCTTCGTCAACATCGGTACTATCAACGTCGCTACTCACCCTCGAGGACACCATGGAGTGTGACATGTGCGGCAAATCTTTTATGCGCAAGCAGGACATGGCCAAACATATGCGCGACCATATGAGTGGCGCCATTACCAAGGAGAACGTCGACCTGAGTTTATTTCGGTGCATCTACTGCTCTAAGTCGTTTGTTGGACGCAAGAGTTTAAATACGCATCAAACACTGCACGAGGAGTCGCCGTTAAGGACTGAACCTTCGTCGTCTCGCACGAATTCGACAGCAGCGACGCTAAAGCGACCCGCCAGTCAGTCGCTGGCGGATGCCTCGCCGGCCAAACGGCGTCACAGCGAGTCCACAACCGTTGGGACGGCAGCTTCGTCGGCGCAAGACGAATTAATCGGCTGGGATGATGTTCCGTCGGCGCACCAGTGCCACGAATGCGACAGACGTCTGGCGACGAAGCAGAGTTTGCGTCGACACATGGAGTGGCACGCCAGAGTGAAGGCGGCAGACGGCGCAGGTGACGATAAATCCTCACCTGCAGAGGTAACGGAGGGTGAGATGAAAATGCCTCCGGCCGTAGCGGTCGTTGAGACACCGTTCGAGTGTCTTTACTGCAAAAAAAGTTTTCCCAGCAAGCAGTTGTTGGTGGAGCACACGAGTGTTCATAAAGGAGCAGCGACAGCGACGACGGCAATTGTGTCGACGACGACATTGGGTGGAGGGCCACCACCGATAGTAGTCAACGATGTGGAAGCGTTGGGTGAGCACGCAGTGGTGCAGTGTGTGGAGGGTGGCAACGAGGAGTACTTCGTGTTCGAGCAGCGCGAGGGTGAGGCGTATCAGTGCAGCGAGTGCGACGAGACGCACTTCGACAAGCTGCAGATGATCGTTCACATGGCGTACCATGTGGGCAAGAGGTGGGCGAACGGCCATCAGAGATCGCTGATTATCCGGGCCGATCCGGTCATGCTGGCGCCGCACGAGTGCCTGTTCTGCGACGAACGTTTTGTGAATAAAACGTACCGTAGTCGACACGTGCTACAGCGGCACCGCGACAACGTGCTGCAGTGCGACTCATGCAAGAAACTATTCTTGAACAAGGTTAAGCTGAGGAACCATTGTATACGCCATATCACCGACGCCATGTACCGTTGCAAACACTGCCTCAAGTGTTTCACCTCCAAGTGGTTCCTGAAGAGGCACGCGCGTAAAAAATGTGGAAGCAGCTCATCGCCGGACAAGAAGCTTCATGTTTACGGTGCAAAGCGAGAAAAGATTGATGGTTCGCTATTCGAAGTAAAAAACCAGCTGGATTATGAAGCAATTATTTTTCGCATTTGA
- Protein Sequence
- MLVNGVSKNKKNVYPPSGLKKEDEPLVNSEKATIDCDKTFVSSEIPSENNPKFGVKNEPNQTAAISSTEFENEADEKCSVDENSFELRIDNDEDEDHNQIIESTLNPKLGCDSVHIKGKEKERSCSVSSSENARSSRNPSTNSRENIKIPDTINNNDDSKVNETVTTKSSVVPSSTVESLPTPVSCAFCEKQFPSKNSLKFHVLSHLKSFLKQDKKENSAMLDAEHEEGAVEIVDGDTSSDYACVFCEKSFPNKITLTVHYKVHHQADSQKVLSQSNNRRPLTTSSAVPSDSIRLGDAADVPAVTNIIGSSSASASIQENGGSEDASKQYKCYICDKQFARNSSLMWHIQFHETYMYTKLKKSNSELENVLNPSGVGGGGEFLSSDSDHSLRCQVCGKTYESLSGYRRHLANHGPIDDDEGGPGEKCELCNKHCPTAIGLKRHIISMHKDQLPPSLMSASTVEDIDGADAETSTKEGDDSISSGSTSGEYLCNVCERVFSHRNSLKRHMILIHKEYSDNTQQQHRQPRTTGFKCDSCGKYFSTSSNMRKHASKYCKGPPDAPVNEEEDNNTNTNKQGVDEFTCEFCDRLFCSQRAASIHRSYTHRLNASDGTVNDTATSDIITNDSYVELDDGFFQCTLCDKTFESRKGVVRHIGYHKSGGLTLTDTSTAAVDQDDSDDSVEDDDEEKIDNDDDDDDDDEDDDDDDDESNSSYECRICSESFRRFRSYKAHLGWHSRRGEEEIMSPRKKSTTFSKSMPTTGKIHQCQHCPRWYNTQQALAGHMKAHQPPKTPTGQSTETPGPLSSGGKTGKTGKTYVCQVCGQQFVTGMGLGGHMKIHAVEGSVVIPAASASSTSVLSTSLLTLEDTMECDMCGKSFMRKQDMAKHMRDHMSGAITKENVDLSLFRCIYCSKSFVGRKSLNTHQTLHEESPLRTEPSSSRTNSTAATLKRPASQSLADASPAKRRHSESTTVGTAASSAQDELIGWDDVPSAHQCHECDRRLATKQSLRRHMEWHARVKAADGAGDDKSSPAEVTEGEMKMPPAVAVVETPFECLYCKKSFPSKQLLVEHTSVHKGAATATTAIVSTTTLGGGPPPIVVNDVEALGEHAVVQCVEGGNEEYFVFEQREGEAYQCSECDETHFDKLQMIVHMAYHVGKRWANGHQRSLIIRADPVMLAPHECLFCDERFVNKTYRSRHVLQRHRDNVLQCDSCKKLFLNKVKLRNHCIRHITDAMYRCKHCLKCFTSKWFLKRHARKKCGSSSSPDKKLHVYGAKREKIDGSLFEVKNQLDYEAIIFRI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -