Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.0007 2.2 9.3 0.6 14 44 93 120 87 120 0.91

2 6 0.052 1.6e+02 3.3 0.8 18 38 126 143 124 148 0.88

3 6 1.5e-05 0.047 14.6 1.3 1 39 138 172 138 178 0.90

4 6 0.015 46 5.1 0.1 18 39 182 200 174 204 0.85

5 6 0.0087 27 5.8 3.2 1 40 194 229 194 232 0.81

6 6 0.0026 8.1 7.5 5.3 2 40 223 257 222 260 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.0007	2.2	9.3	0.6	14	44	93	120	87	120	0.91
2	6	0.052	1.6e+02	3.3	0.8	18	38	126	143	124	148	0.88
3	6	1.5e-05	0.047	14.6	1.3	1	39	138	172	138	178	0.90
4	6	0.015	46	5.1	0.1	18	39	182	200	174	204	0.85
5	6	0.0087	27	5.8	3.2	1	40	194	229	194	232	0.81
6	6	0.0026	8.1	7.5	5.3	2	40	223	257	222	260	0.84

Coding Sequence: ATGGAAGCTAAAAAACTACCCGATGGTAATCCACATCTAACTAACGAACTATGGATGGAAAACCCTGTTCTCATTATGCCAGAAGTGGTAATGACGGAAGACcttatgaaaaaggaaaaaaacaatccATTGAATGTCACTTTAAATCCTCCTGTAATTTTACAATCGGTGGAATTCATGTATTCATCAATGAAACCACCAGAGTTCGACAAAAACGAGCAAGTTATGAGCCACCATATGATGAACAACGTTCCACCACCCAGTAACAGTAACAGTAACAGTGCCGTAATTTGTACGTGGTGTAAAAATCACTTTAAAGATAAAACTGACTTACTGAATCACATCAAACAAAACCATCCTGTTAATCGTTTGCATACTTGCTCGGAGTGTTCCAAAGTCTTTACccaaaaatctaatttaaaagCACACTACAGAGTACACACAGGCGAGAAGCCATTCAAATGTACCTACTGTCCAAAAATGTTCGCGCAAAAGTCAAATCTGATGAATCACTTGTCAGTGCACACGCGAGATAAACCATTTGGATGTCCTGTGTGTAAACGAGCCTTTTCACAAAGATCGAATCTCAAAAGTCATATATTCACTCATACCGGAGAAAAACCTTACAAGTGCAGTTTGTGCGACAAAGATTTTGTCCAAAAGTCAAACTTGACATGCCATGTGCGTACACATACCGCTGAAAAGCCACACCACTGTAATATATGTGATAAATATTTTAGTCAACGATCAAATTTGGTCAGCCATATGAAACTGCATGCGAAGGTTTCCGTGTAA
Protein Sequence: MEAKKLPDGNPHLTNELWMENPVLIMPEVVMTEDLMKKEKNNPLNVTLNPPVILQSVEFMYSSMKPPEFDKNEQVMSHHMMNNVPPPSNSNSNSAVICTWCKNHFKDKTDLLNHIKQNHPVNRLHTCSECSKVFTQKSNLKAHYRVHTGEKPFKCTYCPKMFAQKSNLMNHLSVHTRDKPFGCPVCKRAFSQRSNLKSHIFTHTGEKPYKCSLCDKDFVQKSNLTCHVRTHTAEKPHHCNICDKYFSQRSNLVSHMKLHAKVSV*

Sequence clustering based on sequence similarity using MMseqs2