Basic Information

Gene Symbol
stc
Assembly
GCA_029851415.1
Location
CM056741.1:60598915-60605220[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 4 6.1e+04 -4.3 1.6 15 19 514 518 513 518 0.81
2 16 0.27 4.2e+03 -0.4 0.1 4 10 547 553 546 554 0.94
3 16 2.6e-06 0.04 15.7 12.9 4 19 564 579 562 579 0.93
4 16 3.8 5.8e+04 -4.0 0.9 6 10 605 609 604 609 0.88
5 16 3.2e-08 0.00049 21.8 15.8 1 18 615 632 615 633 0.98
6 16 1.7 2.6e+04 -2.9 0.8 6 10 661 665 660 665 0.89
7 16 1.4e-05 0.22 13.3 13.5 1 18 671 688 671 689 0.98
8 16 0.88 1.4e+04 -2.0 3.4 5 12 718 725 718 725 0.91
9 16 0.00011 1.8 10.4 12.8 4 18 736 750 729 751 0.86
10 16 3.1 4.8e+04 -3.8 2.0 5 10 780 785 780 785 0.93
11 16 0.0039 60 5.5 8.2 1 11 791 801 791 802 0.96
12 16 3.2e-10 4.9e-06 28.2 13.9 1 19 818 836 818 836 0.98
13 16 3.9 6e+04 -4.1 0.7 6 10 865 869 864 869 0.84
14 16 4 6.1e+04 -5.4 8.5 10 19 883 893 875 893 0.74
15 16 4.2e-05 0.65 11.8 15.4 1 16 929 944 929 955 0.86
16 16 3e-05 0.46 12.3 16.0 1 19 961 980 961 980 0.97

Sequence Information

Coding Sequence
ATGGCTACATGGGATGGATCATATCAAGAACCAGATGGATCTAATTACTATGCTGATACATATGGAAATCATACATCTGATGGTCTTCCAGAATCAGCTTATTACTATCACAATTCAAATAATCAACAAGTGCCGGATGCTGCAGCATTCCATCCTTTGGAAACATCCATGGTCTTCAATCAAAGTACTTCACATTTAGACAACCATGCTAGTAACTATTCGCCAAACACAAGTTCAAGATCTAAACCATATCCCACCAATGATCTGCACTCTACTGCCAATAAGTCAAATATGCAGGCTATTGAAACACCTGGTGATTCTTCCAACCAACTTCCATGCTTTTATAAGAATAATGAAGTGAAGTCACAACAATTTCCACGTGCTCACTACAACAATAGAccaaattttcaccaaaataataGCAAACGCAAAAACATGAATAAGGCTCAAATATCCGATTTAGTAGAACACTCTAATCTGCATGCTACTGCTAATGAATTTGTGCCCAGCCAAATGAAGCAAAATAAAGGAAATAGTGGAAATCTAAATAGAAACAATAGGGAGTCGACAAATAATGGTCATCAGAATCAAGATGTGAACTCATCTTCTAACAATGTTTTCTTTGAGGATAATAAATCTAAGATGAATGatggaagatttgaaagtaaaaGAGATCCAGCAAGAAGGTGGCGCGAAACTCCTAATGGGCATTATCCAAAAGATGAGAGAAGAGATTATGGTCGCAACCAAAATTCCAGAAGATATCAGAATGAAAGGCAGAGCTACAACAAAAATTATCCTGAAAAATCTCGTTACATGCGTGGTTCAAGGGataatttggaaaatcatcTTACTGACTCAAATGTTGTCCCTAGAGAGGGAAAGCTCAATGAGACAGGGGACAGCCTTGATTCCAACAATTTGCAGGATGAATCACCAGAGTCTTCAAATTCGCAATCAATCCGGAACTTCAAACCATCTACTAACTTGCATGCAGATCGCTATAACGAAAGAAAAGAACGGTTTAACCCAAAAGATCCAAGAGATAGAGGCAGAGTTTATCCTGAATACAATGGATACAACAGGAACAACCATAACAGAGACAGTTATGCCAGAGAAAGTGTCTACAGAGACAATTATAATAAAGATAATTATAACAGGGATAGTCATAATAGAGATCCCTATAGCAGAGATAGCTATAATAGAGAGAACAGATTTGAAAGAAGAGATAATAGGAATACTTATTTTGATAATCGTGACAAGGACGTAACGGATTGGAGACAAAAGGTGAACGATAATGGTAACAGAAATGTAGTATTGAAACGCCCTCATCCAAAAAAATACGAACCAGATGATGATGCAGATCAAAGAGAAAGATTGACTGAACAGTTAAACCGGGGTCAGTTGGAATGCCTCGTTTGCTGTGAGTCTATTCGTCAAGCCGATTACGTATGGTCTTGCAAGAACTGTTATCACGTTATGCATTTGAAGTGTGTTCAGAAGTGGGCGAAATCATCGCAAGATGAAGGTGGTTGGCGCTGTCCAGCATGTCAAAATGTATCTCCAGAGATGCCAGAGGACTACTTTTGTTTCTGTGGTAAAACTAGAATGCCGGAGTGGAATCGCCGAGACATTGCACATTCGTGCGGTGAGATTTGCGGTAGATCACGGCCGGATCCAACCTGTGTTCACAAGTGTACTCTTCTCTGCCATCCCGGTTCATGTGGGCCTTGCTCGGCGATGATTACTAAGTCGTGCGGATGTGGCCGTATGTCACAAACACAAAAGTGCAGCACGGGTCCGTTACTGCAGTGCGACGAACTATGCGGTCGAGCGCTGAACTGTGGGATCCATACGTGTGAGAGCAAGTGCCACCATGGAAGCTGTGAGCCTTGTGATAAGCTTATCAAACAAGAATGCTATTGCGGGCAAAACTCACGAGAAGAAACTTGTACCTTGAACTTGTCACCGTTGTATTCATGTGAGAACGTTTGTAACAAGATACTAGATTGTGGAAATCATCACTGTAAAGACATATGTCACCCAGATGAATGTAAATCTTGTGTTCTGAAACCAGAATCTGTCACACAGTGCTGTTGTGGACAGACACCATTGACTGAGAAACGAGAGAGCTGCCTTGATCCCATTCCAACTTGTGATAAAGTTTgctgtaaaaaattgaaatgtggTCAACCAAGTAACCCTCATATCTGCCAATCAAACTGCCACGAAGGCGAATGCCCTGAATGTGATCTCGTCACAAAAGTAAGGTGCCGTTGTGGTCACATGGATAAAGAGATCCCGTGCAAGGAATTGAAGTCAAAAGCTGACGATGCACGCTGTGAGAAAAAATGCACTAAGAAACGTTCATGTGGCAAACATAAATGTAATCAAATGTGTTGCATCGATATCGAGCACATATGCCTGCTGCCATGCTCTAAGACACTGAGTTGCGGCCAACATCGCTGTGAGCAGACTTGTCATCGAGGGAGATGTCAACCGTGCTGGCGTAGCAGTTTCGACGAGCTTTACTGCGAGTGTGGAGCTGAGGTGATTTATCCACCAGTCGCTTGTGGAACTCGTCGACCGGCATGCTCAAAGCCGTGTACGCGTGAGCACCCGTGCGGGCACGAGGTGCTTCATAATTGCCACAGTGACGCAACGTGCCCACCCTGCAGCGTGCTTACCCAAAAGTGGTGCTACGGAAAACACGAGCTGCGTAAAGCTGTGCCCTGTTACGTGAATGATGTGTCGTGTGGCTTACCCTGCGCAAAACCCATATCCTGTGGCAGGCACAAGTGCGTGCAGAACTGTCATGTAGGACCTTGCGAAAAACCAGGTCAACAGTGCGTCCAACCTTGTACGGTTCCTCGAGATTTGTGTGGTCATCCATGTGCGGCTCCCTGCCACGAGGGCAAATGCCCTGATACACCCTGTAAAGTGATGGTGAAGGTGACCTGCCAATGCGGTAATCGCACAATGTCGCGTGTCTGTGCCGAAAACGCTCGCGACTACCAGAGAATTGCTAGTGGTATTCTTGCGAGTAAGATGGCTGAGATGCAGTTGGGCCACTCGATCGACCTGGAAGAAGTATTTGGCCAAGGTGCTAAAAAGCAGAATCAGCTTAAAACACTCGAATGTAATGAGGACTGCCGCATGGTCGAGCGTAACCGCAGACTCACTTTGGGTCTGCAGATAGCCAACCCAGATCTCAGTGGCAAACTCATGCCTAGATACAGCGAATTTATGAAGCAATGGGGTAAAAAAGATCCAGCTTTTTGTCAGATGGTACATGATCGGCTAACCGAGCTAGTCCAGCTCGCGAAGACGTCCAAGCAGAAGTCGCGCAGCTATTCATTCGAGTGCATGACTCGTGACAAACGCCAATTTGTGCATGAATCGTGTGAACACTTTGGTTGCGAAAGCCAGGCCTATGACCAGGAGCCAAAGCGTAACGTCGTCGCCACCGCTGTAAAAGACAAGTGTTGGTTACCAAGCTACAGCCTGATGGAGCTGATGCAGAGGGAAAATGGTCAAAGAAAAGTTCCAGGACCAATGCTCAACAAGTCAAAACTCAACAGCTCGGAAAGAAGTATGGATGTCTTGCAACGCAATCCCAAGAAGAATCTGACACCTATGACTAAAACGGCTGTATCACCATCTCGTTCTCCTGAACCAGAAATAGATTACTTCAACTACAAAGGACGATGA
Protein Sequence
MATWDGSYQEPDGSNYYADTYGNHTSDGLPESAYYYHNSNNQQVPDAAAFHPLETSMVFNQSTSHLDNHASNYSPNTSSRSKPYPTNDLHSTANKSNMQAIETPGDSSNQLPCFYKNNEVKSQQFPRAHYNNRPNFHQNNSKRKNMNKAQISDLVEHSNLHATANEFVPSQMKQNKGNSGNLNRNNRESTNNGHQNQDVNSSSNNVFFEDNKSKMNDGRFESKRDPARRWRETPNGHYPKDERRDYGRNQNSRRYQNERQSYNKNYPEKSRYMRGSRDNLENHLTDSNVVPREGKLNETGDSLDSNNLQDESPESSNSQSIRNFKPSTNLHADRYNERKERFNPKDPRDRGRVYPEYNGYNRNNHNRDSYARESVYRDNYNKDNYNRDSHNRDPYSRDSYNRENRFERRDNRNTYFDNRDKDVTDWRQKVNDNGNRNVVLKRPHPKKYEPDDDADQRERLTEQLNRGQLECLVCCESIRQADYVWSCKNCYHVMHLKCVQKWAKSSQDEGGWRCPACQNVSPEMPEDYFCFCGKTRMPEWNRRDIAHSCGEICGRSRPDPTCVHKCTLLCHPGSCGPCSAMITKSCGCGRMSQTQKCSTGPLLQCDELCGRALNCGIHTCESKCHHGSCEPCDKLIKQECYCGQNSREETCTLNLSPLYSCENVCNKILDCGNHHCKDICHPDECKSCVLKPESVTQCCCGQTPLTEKRESCLDPIPTCDKVCCKKLKCGQPSNPHICQSNCHEGECPECDLVTKVRCRCGHMDKEIPCKELKSKADDARCEKKCTKKRSCGKHKCNQMCCIDIEHICLLPCSKTLSCGQHRCEQTCHRGRCQPCWRSSFDELYCECGAEVIYPPVACGTRRPACSKPCTREHPCGHEVLHNCHSDATCPPCSVLTQKWCYGKHELRKAVPCYVNDVSCGLPCAKPISCGRHKCVQNCHVGPCEKPGQQCVQPCTVPRDLCGHPCAAPCHEGKCPDTPCKVMVKVTCQCGNRTMSRVCAENARDYQRIASGILASKMAEMQLGHSIDLEEVFGQGAKKQNQLKTLECNEDCRMVERNRRLTLGLQIANPDLSGKLMPRYSEFMKQWGKKDPAFCQMVHDRLTELVQLAKTSKQKSRSYSFECMTRDKRQFVHESCEHFGCESQAYDQEPKRNVVATAVKDKCWLPSYSLMELMQRENGQRKVPGPMLNKSKLNSSERSMDVLQRNPKKNLTPMTKTAVSPSRSPEPEIDYFNYKGR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-