Basic Information

Transcription Factor Domain

TF Family: zf-GATA
Domain: zf-GATA domain
PFAM: PF00320
TF Group: Zinc-Coordinating Group
Description: This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.00063 4.3 8.7 0.1 17 35 26 44 23 45 0.86

2 6 0.004 27 6.2 0.0 18 35 55 72 53 73 0.85

3 6 0.011 76 4.7 0.2 1 10 88 97 88 98 0.90

4 6 0.00092 6.3 8.2 0.1 23 34 117 128 112 130 0.86

5 6 0.00025 1.7 10.0 0.2 19 34 172 186 167 188 0.80

6 6 2.7 1.8e+04 -2.9 0.0 10 19 190 199 189 206 0.69

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.00063	4.3	8.7	0.1	17	35	26	44	23	45	0.86
2	6	0.004	27	6.2	0.0	18	35	55	72	53	73	0.85
3	6	0.011	76	4.7	0.2	1	10	88	97	88	98	0.90
4	6	0.00092	6.3	8.2	0.1	23	34	117	128	112	130	0.86
5	6	0.00025	1.7	10.0	0.2	19	34	172	186	167	188	0.80
6	6	2.7	1.8e+04	-2.9	0.0	10	19	190	199	189	206	0.69

Coding Sequence: ATGTCACGAAGAAAAGGACGTACAAGTCGAGAGATAGTGCCTAGACGCAAAATAGATTTTCCAATTGACGTAGCCGATGGTAAACCTTACACTTGTGACCACTGCAATTTGCGCTTCAAACAAAAAGGAACTTTGATTGATCACATCATGATTCATATAGATGAAAAGAGACTAGAATGTGATATATGCGGTGTAAGCTATCGGCATCGGAAAACTTTGGCGGATCACAAGCGTACTCATACCGGTGAGAGGCCTTACAAATGCAGCCAGTGTCATGCAGACTTTACCCGACTCAAGTATTTGAAGGATCATGAAATTACCCACATTTATGGTGAAAAACCATTTGCCTGCAACGAGTGCGGAAGTAGATTCACTAAAAAATCCAGCTTAGTAGATCATCAACGTCGTCACACGGGCATAGTGAAACCATTCAAGTGTACAGAGTGTGTCAAGAGTTTCGGACATAGAAAAACGCTTAATGATCATCTCTTCTTCATTCATGACGTGAAGAAACCATACGAGTGTAGAAGATGCGGCTTGAGATATCAGCACAAGTTTCATCTTACTCGTCACATGAGAAAAGAAGGCCATGGTAAGTTTAAACAAGTACACGTATGTACATACTCCACTCCACCATCTGGAAATTTTGCATCACTTTTCGATGGAAACAGCCCATTAAACTAG
Protein Sequence: MSRRKGRTSREIVPRRKIDFPIDVADGKPYTCDHCNLRFKQKGTLIDHIMIHIDEKRLECDICGVSYRHRKTLADHKRTHTGERPYKCSQCHADFTRLKYLKDHEITHIYGEKPFACNECGSRFTKKSSLVDHQRRHTGIVKPFKCTECVKSFGHRKTLNDHLFFIHDVKKPYECRRCGLRYQHKFHLTRHMRKEGHGKFKQVHVCTYSTPPSGNFASLFDGNSPLN

Sequence clustering based on sequence similarity using MMseqs2