Ehay031825.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Eretmocerus hayati
Gene Symbol
prdm10
Assembly
GCA_029851415.1
Location
CM056743.1:4304284-4308519[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.0016 0.35 13.1 5.6 1 23 580 602 580 602 0.91
2 9 2e-06 0.00042 22.3 2.1 1 23 610 632 610 632 0.99
3 9 0.29 62 6.0 0.0 2 17 640 655 639 656 0.91
4 9 0.014 3.1 10.1 2.7 2 23 669 690 668 691 0.88
5 9 0.0073 1.6 11.1 3.2 1 23 696 718 696 718 0.97
6 9 3.8e-05 0.0081 18.3 1.8 1 23 724 747 724 747 0.97
7 9 0.002 0.43 12.8 1.0 1 23 780 803 780 803 0.97
8 9 0.00015 0.033 16.3 2.4 1 23 825 848 825 848 0.97
9 9 0.0045 0.97 11.7 3.4 3 23 886 907 886 907 0.98

Sequence Information

Coding Sequence
ATGGACCAAGGGGGCCTTCTCGGGGGTGCTCCTGTTGTCGTAGCTGACCCTCTCGACATGACCATCATCGACAAGGTCTGCGCCGAGTCAACCTGGCCTGATGACAACATTGTAACTTCGTCTACTTTCTGCGAGCAGCCTAGGAAACTCAACAACAAACTTCTTTTCCTCACGGTTGAATTTGCAGACCAAGGCAAAGATTTTGGTCGTATGTTATCATCATTGGATCAAGTTACTTTTCCATCAAGAGCTGATTCTCCCTTGTGTGACTTTGAAGATCAAGTCAGCCCTCATGATCCAAATATGAGTTCTGCTGCACGATATTCACCAACGCCAAATCCATTACCTTCGTCACCATTCCACAATCCTGTTGTCACACTACCTGAACCGTCATCCCCTCTCATATCAACAACAGAGCCTACTGTGCCCATATCGAATGGGTACTCATTGCAGCTCACTGATCAGTCATCTACGCCAAGTATATCCCCCAGTGAAAACTCAGAAGATTTTACTGATAGCACAAGTGATGAGCTGGTCTCGAGTGTTAGCAGTGACTTGATGTTAATCCAAGGTTCTGACTTGGCACTTGCAAGAGATTTCTTGGTCATGCAAGAGGACCAAATGAATGTCCTCAATTCTATCAAACTCAATTCAAGTCTTGATTCTAATCTCAATCAAGTATCTGAAAGTATTATGTCTAATGAAACAGAAGATGAAACAAACGCACAAATATCATCGATGAAGACGCTTAGAAGATTTTTAGAGCAACCAAGCCGGAGTATCTATCAGGGTAAAAGAGATATTATTTGGAGTAAAGATCAAAGTAATGATGATAGTAATTTGTGGCATGAAGATTGTGACAGTACTTGTTTGAATACTACAGACTGCTCTTTGCATGGAGTTTGCTCAATAGCTGATCAACCCGTTCCTTCAAGAGCAGTTGCAACATTACCCGGCCTTTATCTCTCGATTGACAAGATTCGGCCTTCAGGTCCTAATAACGGTTCCTCGGAAGTTGGTGTCTTTGCTAAACGTAATATTTGTCGCCGGACGCAGTTTGGTCCGATTGAAGGAGTTGTGCGTCCGTATgatggatcaaaaattgatggcTTACCATTACTGTTGGAAACTGTGGGAGGAAATGAGTACATGCGGATCGACGTCTCTGATGAAAatTCCTCTAACTGGATGCGCTTTGTCAGGCCTGCTCGTATATATGAAGAGCAAAACTTAGTTATTTGCCAGCTGAATAATGGAATCATATTCCTCACGACCCGCAATATAATGCCTAATGAAGAACTAAAGGCTGGTCCAAGCTTTGAATATGGCAAACGACGAAACTTACCTGTATTAGAAACCATCTCTAAAAACATTACTGGCAATTCAAGTCCAGAATTATGTATTCAGTCTCCCACAAAACCAGAGCAGTTTGATGTTGTGGGTCAAAATCTTAGAGAatctttgggaattttcaaccagaataACACATCTAAAACACAGCTGAGACGCAAAGCTGCACAAGTCTCATTTGAAAAATATCTGAAACTTGAAGATGATGACTATTCAAGTGATGAGGAGGAAAAGTCTTTCATTCAAGATGATTTTGATCTTTTGTCtggagaagaaagagagaaagaaaattcTCCAGACTCTGAATTGGAACTAATGAGACAAGAGATAACTCAGTCTCACCTAAAAACCCCACCACAAAATGGAGACATTGTCTCATCCACCATTCATAAATGTGACTTGtgttcaaaaatgttctcaTCGAAATCCAAGTTGCAGCAACACTGCCTGATACATAGTGACAGGGAAGATGATTCTTTTACATGCAACATTTGTTTGAAAACATTCATGAACAACTCATCCCTAACTCGTCATGTGAAAACACATCAGAAGGATAGACAATCTTTGGAATGTCCTGTATGTAAGGAGGCATTTGGTCGTATGTCgaccttgaaagatttttctgaaactTGCTTGAACCAGGATGAAACCTTGACATGTCCCCACTGCCCCAAAACATTTACAAGCTATGCTATAACTCGCAAGCATGCCCGCGGCCATCATTTTGATCGGAAACATGAATGCCACttctgtttgaaaaattttcctgctGCGGATAAATTGAAAATGCACATGCTCAAGCACTCTGATCACAGGGAGTTTCAATGCGCCAACTGTAGTAAACAATTCAAACGCAAGGATAAACTCAAGGACCATGTCATGCGAGTACACTATGCAGAAAAGATCAACAAGGAccaaattttattgaataatcGTGCCAAAAAACCCATTACCAAGTCGAATTCAGTCGATTGTGATCGTTTCATTTACAAATGTCGTCGTTGCCAAGTTGGTTTTAAACGTAGAGGAATGCTCGTCAATCATCTAGCAAAGCGACATCCGGATGTTCCTCCTGACACTGTACCTGAGCTCTGCATGCCAATTCTGCGGCAGACGCGTGATTACTACTGTCAATACTGTGAAAAAGTGTACAAAAGCAGCAGTAAACGAAAAGCGCACATAATGAAAAACCATCCAGGAGCAGCTCTACCACCAAGCAACAGAAGCAAAGAGTGTGATCTCCCTGGCATACCCAATCCAACATTCAGTCAAGCTGCTGGCAGTATCAAGACTGTACCTCAAGGTTGTCAGTGGTGTCACAAACAATATGCTAGCAAAGCGAAGCTCCTACAACACCAGCGCAAGAAACATCCTAATCTGATGGAACCAGCAGATCAGATACCTCGACCTCGTAGCCGTCCACCTCCTCAAAATCAGAACCAGCCACCAATGTCTATTGGCGCATTTGAAACTGAATCAATTGTAAAGCTCGAGCCTACATCTTCCGAAGATCTGCAGAAGCCTCGCATTTTCCGAGTGGTAAGCGAATCCGTTGGGGAATCCTTATTCGTCGGGAATAGCGGAGCCGATTTCGAGCTGCTCGCTTCGCAATTTGCTCGCGTGCGTGACATGCGCTGA
Protein Sequence
MDQGGLLGGAPVVVADPLDMTIIDKVCAESTWPDDNIVTSSTFCEQPRKLNNKLLFLTVEFADQGKDFGRMLSSLDQVTFPSRADSPLCDFEDQVSPHDPNMSSAARYSPTPNPLPSSPFHNPVVTLPEPSSPLISTTEPTVPISNGYSLQLTDQSSTPSISPSENSEDFTDSTSDELVSSVSSDLMLIQGSDLALARDFLVMQEDQMNVLNSIKLNSSLDSNLNQVSESIMSNETEDETNAQISSMKTLRRFLEQPSRSIYQGKRDIIWSKDQSNDDSNLWHEDCDSTCLNTTDCSLHGVCSIADQPVPSRAVATLPGLYLSIDKIRPSGPNNGSSEVGVFAKRNICRRTQFGPIEGVVRPYDGSKIDGLPLLLETVGGNEYMRIDVSDENSSNWMRFVRPARIYEEQNLVICQLNNGIIFLTTRNIMPNEELKAGPSFEYGKRRNLPVLETISKNITGNSSPELCIQSPTKPEQFDVVGQNLRESLGIFNQNNTSKTQLRRKAAQVSFEKYLKLEDDDYSSDEEEKSFIQDDFDLLSGEEREKENSPDSELELMRQEITQSHLKTPPQNGDIVSSTIHKCDLCSKMFSSKSKLQQHCLIHSDREDDSFTCNICLKTFMNNSSLTRHVKTHQKDRQSLECPVCKEAFGRMSTLKDFSETCLNQDETLTCPHCPKTFTSYAITRKHARGHHFDRKHECHFCLKNFPAADKLKMHMLKHSDHREFQCANCSKQFKRKDKLKDHVMRVHYAEKINKDQILLNNRAKKPITKSNSVDCDRFIYKCRRCQVGFKRRGMLVNHLAKRHPDVPPDTVPELCMPILRQTRDYYCQYCEKVYKSSSKRKAHIMKNHPGAALPPSNRSKECDLPGIPNPTFSQAAGSIKTVPQGCQWCHKQYASKAKLLQHQRKKHPNLMEPADQIPRPRSRPPPQNQNQPPMSIGAFETESIVKLEPTSSEDLQKPRIFRVVSESVGESLFVGNSGADFELLASQFARVRDMR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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