Ehay031234.1
Basic Information
- Insect
- Eretmocerus hayati
- Gene Symbol
- -
- Assembly
- GCA_029851415.1
- Location
- CM056742.1:187735335-187738319[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.094 20 7.6 2.0 1 23 276 298 276 298 0.95 2 12 6.9e-05 0.015 17.4 1.2 1 23 306 328 306 328 0.99 3 12 0.00032 0.069 15.3 0.5 2 23 336 357 335 357 0.96 4 12 8.7e-06 0.0019 20.3 0.6 1 23 363 385 363 385 0.98 5 12 0.00013 0.027 16.6 2.5 3 23 394 414 392 414 0.98 6 12 9.9e-07 0.00021 23.2 0.1 1 23 420 442 420 442 0.98 7 12 1.4e-05 0.003 19.6 0.1 1 23 448 470 448 470 0.98 8 12 3.3e-07 7.1e-05 24.7 0.8 1 23 476 499 476 499 0.96 9 12 1e-05 0.0022 20.0 0.7 1 23 505 528 505 528 0.95 10 12 5.9e-06 0.0013 20.8 2.7 1 23 534 556 534 556 0.99 11 12 0.0001 0.021 16.9 0.4 1 23 562 584 562 584 0.94 12 12 0.00041 0.087 15.0 0.2 1 23 590 614 590 614 0.94
Sequence Information
- Coding Sequence
- ATGACAGCAGATTCTGAAAAAGATACATTGCATTGTGTTCTCTGCAATGTTAAGGTGGCAGCAGCAACTAAAGGTGGCACTACCATTTTTGAAGAGAATACTGCATCAAGTGCTAACAGGACTATTGCTCAAATTCTATCAACTCTGCTACACACTTGCTTTGATCAGTCCAACGTACACTCGACTTCAATCTGCAAAAGATGTAGCAAGTTAGTGAATGAGGCTGGGGAGTTGCAGAACAAGCTTGAAAAAATTAGATCGAAAATTGGTAGTTTGtttgaaaaaaccaaaaaaacaCTGAACATCACATGTGCAAGCAATCATAGTGCAAACGCAAACTGTGTGAATAATGTTTTCGACAGTGAGACACTTGAATTGGCTACTCCTATCTCGGAAAAAATTAGAGAGTTGAAGGGAAAAACTAGGAAGGGCTCAGTTGTGGAAGAAACAGTCAAAGGCCATATTGTAAAATCCGAATTTCTAAGTGTACAGCAAATctttgatgatgaagatgaacaCCTGGATACTGATAAGATTCTTGTCAAGCCTGACCTGGATGCAAGTGATGCAGGTCCTATagaggatgaaaatattgatgatgaagACATTGATTGTGCTCCACTAGAGGATGAATCACAGATAGAAGAAGTTATTTTGGTGAAAGAAGATAGTGATTCACTCAAGAAGGAAGATGAAGTAAAGCCAGATTTATCTGTCAGGGATGGTGATACTTACACTTGCGCGATCTGCCCTCAAGAAAACGCTGAAAAGAGAGATGCCAAGGGTATTATCGCACATTTAAAAGAAGCACACAACACTCGCCTATACATATGCGATGTTTGCGGAGATCAGTTCCACAAAAGAACCGATCTCTCTCATCACTTGGATGAACATGTGGCCAAAGAGGATGGTGATTTTCAATGTGAAGTTTGTAAtagaatattcaacaatttacGACTCTTCAGGATACACAAGCGCGTCCATTATCCACAAGCAAAGTCTTGGAATTGTGACACTTGTGGCAAGAAATATTCCTCGAAAAATTTACTCGATGAACACACCAATATTCACACAGGTAATCGGCCCTACATTTGCGAGACATGTGGGAAAGATTTTGCATCTAAATATACTTATCGCGCGCACGCCAAAACTCACGAAGTGAGACCCAGGCCGTTTGGATGCGATCACTGTCCCAAAACCTTCCTAAGTTTGCAAAATCTCACACAGCACATGAAAACACACAACGGTGTCAAGGAGTTCGTTTGTACTGAGTGTGGGAAAGCCTTTGGATCAGCTCACAATTTAGAGGTTCATCAAATTGTTCATACGGGATACAAACCCTACATCTGCCGTGTTTGTGGTAAAGCCTTCGCCCGAAAAGCGGAAATTCGAGATCACGAAAGAACTCATACCGGTGAAAAACCATATCAATGTGAGATGTGCGGCGCTACATTCAGCCAAAGGTCCAATCTACAGTCTCATAAACGAGCTACTCATTACAATGATAAAAGATACAAGTGTGACGAATGTGGCAAGGCTTTCAAAAGAAGAAGATTGTTGGATTACCATACAAAAGCAGCCCACACTGGAGAACGACCTTACAAGTGCGAAACCTGCTCAGCAACTTTCGTTTATCCAGAACATTTCAAAAAACATATGCGAATACATACTGGAGAGAAACCCTACTTATGCGAGGTTTGTGGGAAAGCATTCAATAGCAGAGATAACCGCAATGCTCACAGATTCATTCACAGTGATAAGAAACCATATGAATGTTTGGTTTGTGGAATGGGTTTTATGCGAAAACCTTTACTGTACACCCATATGCAGACTCAGGGGCATTTAAACGATACCATAGTTGTAAACCAACCAAGGCTTACAGCAGAACAAGATCtagtgattgaaaattctcaagttcATTTAGTCATGGAGGGTGATCCAGATCAAATGATAGAGGGAGAAGGGCTCATTGTTGCTGAGTTCGACAATCATGTGATACTTCAGGATGGGAATGAGCAAATTTTAAGTTTGGGTGATGATAACGTCAGTGGcgaggaaaatgatgaaataggTGATGAACAGATGGAATATGATAATTCAGACGATGTGGACTGTAAAATCGACGGAGATGATGAAATGGAGGAAATTTATGGGTACCAAGACGAGGACGGTAACACCATAGTCTTACCACCAGGTGCAGACATTAACGAAATTTTAGGAGTTCGAAAGATGCAGTTGGTTCAAATTCGTCTACCTGCAGGTGCTGCCGATGACGATCGAAATTGGCTGAGCATTGCTCCAAGTTCTTCGTCGTAA
- Protein Sequence
- MTADSEKDTLHCVLCNVKVAAATKGGTTIFEENTASSANRTIAQILSTLLHTCFDQSNVHSTSICKRCSKLVNEAGELQNKLEKIRSKIGSLFEKTKKTLNITCASNHSANANCVNNVFDSETLELATPISEKIRELKGKTRKGSVVEETVKGHIVKSEFLSVQQIFDDEDEHLDTDKILVKPDLDASDAGPIEDENIDDEDIDCAPLEDESQIEEVILVKEDSDSLKKEDEVKPDLSVRDGDTYTCAICPQENAEKRDAKGIIAHLKEAHNTRLYICDVCGDQFHKRTDLSHHLDEHVAKEDGDFQCEVCNRIFNNLRLFRIHKRVHYPQAKSWNCDTCGKKYSSKNLLDEHTNIHTGNRPYICETCGKDFASKYTYRAHAKTHEVRPRPFGCDHCPKTFLSLQNLTQHMKTHNGVKEFVCTECGKAFGSAHNLEVHQIVHTGYKPYICRVCGKAFARKAEIRDHERTHTGEKPYQCEMCGATFSQRSNLQSHKRATHYNDKRYKCDECGKAFKRRRLLDYHTKAAHTGERPYKCETCSATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYTHMQTQGHLNDTIVVNQPRLTAEQDLVIENSQVHLVMEGDPDQMIEGEGLIVAEFDNHVILQDGNEQILSLGDDNVSGEENDEIGDEQMEYDNSDDVDCKIDGDDEMEEIYGYQDEDGNTIVLPPGADINEILGVRKMQLVQIRLPAGAADDDRNWLSIAPSSSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -