Ehay047133.1
Basic Information
- Insect
- Eretmocerus hayati
- Gene Symbol
- -
- Assembly
- GCA_029851415.1
- Location
- CM056744.1:18373509-18375566[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00095 0.2 13.9 1.9 2 23 11 32 10 32 0.96 2 20 0.00017 0.037 16.2 3.2 1 23 51 73 51 73 0.97 3 20 8.6e-05 0.018 17.1 0.6 3 23 81 101 81 101 0.99 4 20 8.3e-05 0.018 17.2 0.9 1 23 147 170 147 170 0.96 5 20 0.0003 0.064 15.4 2.1 1 23 175 197 175 197 0.95 6 20 0.18 38 6.7 4.0 1 23 203 227 203 227 0.90 7 20 5.8e-05 0.012 17.7 0.1 2 23 232 253 231 253 0.91 8 20 2.4e-05 0.0051 18.9 2.3 1 23 259 282 259 282 0.96 9 20 0.084 18 7.7 0.1 7 23 292 309 283 309 0.88 10 20 0.00032 0.069 15.3 0.2 1 23 314 336 314 336 0.95 11 20 0.0038 0.82 11.9 2.6 1 23 346 368 346 368 0.96 12 20 1.2e-06 0.00025 23.0 0.7 1 23 375 397 375 397 0.97 13 20 1.5e-07 3.3e-05 25.8 0.9 1 23 403 425 403 425 0.98 14 20 3e-06 0.00065 21.7 0.9 1 23 431 453 431 453 0.98 15 20 0.017 3.6 9.9 1.7 1 23 459 481 459 481 0.82 16 20 4.3 9.2e+02 2.3 0.1 2 10 486 494 485 496 0.91 17 20 0.00066 0.14 14.4 2.1 2 23 514 535 513 535 0.97 18 20 0.013 2.8 10.3 2.0 2 23 542 563 541 563 0.97 19 20 0.00052 0.11 14.7 1.7 1 23 569 591 569 591 0.98 20 20 9.9e-05 0.021 16.9 0.8 1 23 597 619 597 619 0.98
Sequence Information
- Coding Sequence
- ATGCAgcattttaatgaaaataaatttgtcTCGTGCAATAACTGCAACAAAGTATTCAAGTGCAAGTCAGATTTGGCCGACCACCTACAATTGCATACGGACGATTTAGTTCCTCAGACGAATAATGAGAATTACCTGAGCAAGCAGGCGTTCTGTTGTGACATCTGCGGAACGGACTTTGCAAACAAGAAAAGTTTAAGGCTCCATAAAAAGAATCACATAGACATGGAACCGTTGGGATGTAAAGTCTGTGGTGAATCATTCAACCTTCACGTGGCTCTTGAGCAACATATGATGACACACACCAATAGACGGGTATTAGGAACTAGCAAAGAGCTGGTCGATTCCACTGGGATAATGAAAGTAAAAGCAATACTGACACAAGCGGAGGTGCCGCGCAAAAATTACAGCATCAACGTTAGTCGAAAGAGACGTTTTTTCATATGTGACAAGTGCGGCAAGAGTTATGATTTGGAATCTAAATTACGCATGCATATGACGCGGAATCACAGGAGCGCAGGATTTTTGTGTCAAACTTGTGGGAAGTTCTTGAGAAGCAAAAAGAGTCTAAAGTATCACGTGAGGATCCACGAACGCAAAAATTTTTACTCTTGTCTAGTGTGCGACAAGAAATTCCTGTACAAATCACATCTTCAATTCCACGCTAGAACACGGAAACATGAGGTGCTATTGTCGTGTGATATTTGTGGTAGACAATTCCGACAGAAGCAAAGTTTGATTGCCCATGTAGTGGCTCATACAGACAAAAGACCACACGCCTGTGAAATCTGCGATCGCAAATTTAAAAATAGAACCGGTTTGAGAACGCATTCAAGGACGGTGCATTGTGATCCCGTGACTTGTGATTTTTATGGCGAGGTCTACAAAAACAAAGCACATTTAGTGACACATATGACAAAAGCGCACGGCTGTGGATCTTTCTTGTGCGATATCTGCGGCAAAGTATTACAAACCAAAAAGGCTCTGAGAATGCACTTGACAGTGCACACTGCCGAGAAGCCGATCGAAAAACGTTATTCATGCAAAATCTGTAGTAAGAAATTGAGCTCGAAATGTGCTATACAAAAGCACATGGTGCTACATGAAAaaagtagaatttttttttcttgcgaaATTTGTGGCAAGAGTCTGAAAACTAAGTCTTCTCTGCAAACGCACGTGAATCTGCACATGGGTGAAAATCAGTTCTCATGCAAAGGTTGCGGTAAGAGTTTTGCAACTAAGGGTGGCTTCCAAACGCACATGATGAGGCATACTGGAACAGAGCCTTATATGTGCAATGTTTGTGGTAGGCGTTTCATCAGTAAAGACTCGTTTAAAGATCACGCTAGGAGCCACACTGGTGAAAGACCATTCGCATGCGGAATTTGCGGCAAGCGTTTCCGTGACAAAAGAGTCAGAGATTATCACTTTAAGAGGCACACAGAGTGTATCGAATGCCAAGTATGCAATCGACGGTTCCAAATTGGGAAGATTTTTAACAAACACAAGCTGAAGTGTAAGAGCAAAAATCGCTTACAGTGTGACATTTGTCACAAAACATTGAGCTCGAGAGTGACTATGTGGAGACACAAGCTTACACACAGAACCGAAAAACGTCTAAAATGCGATCACTGTGGTGCAGGTTTTCACACAATGAGAGTGCTGAAACTGCACATTTTGAGGCATATGAACGAGTGGCCTTTTTCGTGTGAGTTTTGTGGTGCAAAGTTTAGAGCCAAGCAACTCTTCACACGTCACGCTAGAAAGCATAAAGGCAAAGAATTATTTTCCTGCGACATTTGCCAAAAGAAATTCAGTATGAAGAAGATCTTGGAGGTACACATTCGGATGCATGATGTGAAAGATGATTGTCTGTCAGCGAAAGATCAATCGAAACAGAACATTCTAAGGAAAAAGAATGCACCAGCTCGACAAAGGCAGAAACTCAGTGTCGAGGATGCTGTTGCATGTAAGGATCAATTATTTGGTCGGATCAAAACTCTTCATTTATCTATTTATGTACTCTTTTCCGGGCAATTCCGCCATATTTCATGA
- Protein Sequence
- MQHFNENKFVSCNNCNKVFKCKSDLADHLQLHTDDLVPQTNNENYLSKQAFCCDICGTDFANKKSLRLHKKNHIDMEPLGCKVCGESFNLHVALEQHMMTHTNRRVLGTSKELVDSTGIMKVKAILTQAEVPRKNYSINVSRKRRFFICDKCGKSYDLESKLRMHMTRNHRSAGFLCQTCGKFLRSKKSLKYHVRIHERKNFYSCLVCDKKFLYKSHLQFHARTRKHEVLLSCDICGRQFRQKQSLIAHVVAHTDKRPHACEICDRKFKNRTGLRTHSRTVHCDPVTCDFYGEVYKNKAHLVTHMTKAHGCGSFLCDICGKVLQTKKALRMHLTVHTAEKPIEKRYSCKICSKKLSSKCAIQKHMVLHEKSRIFFSCEICGKSLKTKSSLQTHVNLHMGENQFSCKGCGKSFATKGGFQTHMMRHTGTEPYMCNVCGRRFISKDSFKDHARSHTGERPFACGICGKRFRDKRVRDYHFKRHTECIECQVCNRRFQIGKIFNKHKLKCKSKNRLQCDICHKTLSSRVTMWRHKLTHRTEKRLKCDHCGAGFHTMRVLKLHILRHMNEWPFSCEFCGAKFRAKQLFTRHARKHKGKELFSCDICQKKFSMKKILEVHIRMHDVKDDCLSAKDQSKQNILRKKNAPARQRQKLSVEDAVACKDQLFGRIKTLHLSIYVLFSGQFRHIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -