Ehay017057.1
Basic Information
- Insect
- Eretmocerus hayati
- Gene Symbol
- -
- Assembly
- GCA_029851415.1
- Location
- CM056742.1:12868917-12875112[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 8.8e-06 0.0019 20.2 0.4 2 23 285 306 284 306 0.96 2 19 1.3e-06 0.00027 22.9 2.6 3 23 314 334 312 334 0.98 3 19 0.0073 1.6 11.1 0.1 2 20 341 359 340 361 0.92 4 19 0.027 5.7 9.3 2.6 1 23 368 390 368 390 0.94 5 19 4.4e-07 9.3e-05 24.4 2.6 2 23 397 418 396 418 0.96 6 19 4.3 9.2e+02 2.3 0.0 5 17 428 440 427 441 0.89 7 19 0.065 14 8.1 1.1 1 23 457 479 457 479 0.95 8 19 2.8 6e+02 2.9 0.2 2 13 487 498 486 500 0.80 9 19 0.037 7.9 8.9 1.6 2 23 515 536 514 536 0.94 10 19 3.1e-06 0.00067 21.7 0.2 1 23 542 564 542 564 0.98 11 19 6.9e-06 0.0015 20.6 0.6 1 23 570 593 570 593 0.98 12 19 2.6e-06 0.00055 21.9 0.6 2 23 600 621 599 621 0.97 13 19 6.4e-06 0.0014 20.7 1.7 1 23 627 649 627 649 0.95 14 19 0.0025 0.53 12.5 1.1 1 23 655 678 655 678 0.93 15 19 0.0045 0.95 11.7 0.7 1 23 683 705 683 705 0.98 16 19 1.6e-07 3.5e-05 25.7 2.0 1 23 711 733 711 733 0.98 17 19 4.1e-06 0.00087 21.3 0.7 1 23 739 761 739 761 0.98 18 19 0.00018 0.038 16.1 0.1 3 23 771 791 769 791 0.97 19 19 3.9e-06 0.00083 21.4 2.6 1 23 797 819 797 819 0.98
Sequence Information
- Coding Sequence
- ATGGGGCGATCTAGACACAAGCAACTGAGCTTCAAGTGTAAGTCAATCACGGATTATCTAGTGGAACGTCGAGAGATACAACAACCAGATGATGGGAATCGACATTCAAAACCACCTGATTCAACTAGATCATCTCATTTTGGAAAGAAGCAAGCAACCACACCATCGCATACTGGTAACAAGCTACCTACCTTATCATATTATAAAGACTTAAATTCAAGTTTGAATGCTGGCCGGCGAGTGCTGAAAATTGTGTTGGTTCGATGTGACGGGGTGAAGACCAACACGAAGTTCAATCCAACAACTACACGCAAAAACAAAAACAAGAATGGATTGTCTATAACAAATGAAATGCTGCTTTCGTCAACTTCCGAATATAATACGCCTGAGGCAGATGAGTGCGGTTATTTCTCCACAAAATCTCATATTCCAGCAATGTCTCGGGCACAGTTGGAAAATCTCAAACACGAACAGCTGGTTCTGAAAGAAGAAACAATAATGGATGATGatatcgattgcgctcaatctcGGCGACCCAAGATGGAACACGAAAATTCTTCTAGCAGCCTTCAGCAAACGCAATTATTCGCATCTTCAAATTCACAAGGGTGTGCTACCGATGCAAATGTGCATCAGTTGTTTTCGAGATCTGAAACCGGTAGTTTGGCGGAATACAAACAGGAAATGCCACTGGGGGATGATCCGTTGGTGATTGACTATGAGGCTGTTTTGGAAAATCAAATGAAGcctcaaaaatttgattcgagCGAAGCTGAAATTAGTGATCCATATCGGAGCTTCGGAATGCATACCGTACATTGTAAGATCGTTCACCAGAAAAATAAGCCCCTCCCGTGCAAAGTATGTGACGAGAGGTTCATTTATCCATTCCAATTGAAACAGCACATGATGAAGCACACTGGTGAGAGACCATTCGGATGTCAAATTTGTGGTAAGAACTTTGTGTACAATAGTCATTTGACGAAACACATGAAGCAGCATTCGATGGGAAACCCCCTATCGTGCAAGGTCTGTGATAAAGAATTCTCGAGTGTAACCGATCTGGACGTTCACGTCACCGAAAAATCATGTAAAAAGCTATACTTGTGTAAAATCTGCGGCAAAGACTGCCCTCACAAGACATTTCTTGATTTGCATCTGTTGGAGCACAAGGGCGAGGAACCCCTTTGTTGCGACTACTGCGGAAAGAAATTTATTGACAAGTCCAGTTTAAAGCAGCATTTGAGAATTCACACGAGAAAGAAGCCGTTCAGCAACAATGTCTGCAACAAATCGGTCACGAGAAAAGATGGCTTGAACCTGCTCACGATGACTCACAATTCACATcttgaagtccaagatggaacgTTTTCATGCAAGACTTGTGGAAATGTATTCGCCAATAGAATAAAATCGCAGCAGCATGAGAAGATGCACCCATCGGCCGAAGGGCTTTCTACGTGCGATGAATGCGGTAAGGAATTGGAAAGCAAAACAAgttcaattcaaccaattggGACACACGAGGACGACGAGTTGATTGAGTGTAATGTTTGCAAAAAAAACTTTCTCAGTAAGCATGCTCTGAGATTGCATTCGATGCTGCACACTGGTCAATGGCGATTCTCTTGCGAAGTTTGTGGGAAAGGTTTGCGGTCGAAATCCGAATGGACACAGCATATGAGAATACATACTGGTGAGAAACCATTTTCTTGCAGTATTTGCGGAAGAAATTTCAGAACGAAGGCAATCCTAACCAATCATATGAATACAGTGCACAAGGAAAAAGAAGAGATTCCATGTAAATTCTGCAAGAAGAGTTTTTCACGGGCATGGTTGCTTGAACAGCATTTAAGGATGCATACGGGAGAAGAACTCTTCCTGTGTGACATTTGCAAGAAAAGCTTCACTTTAAAATCCACACTGAAGACCCACATGCTCTTACACCAAGAAGACAATCCCTATTCGTGCGGCCTCTGCGAAAAGAAATGCACAAGTCGATCTGAACTTGATGCGCATGTAGCTTATAGGCACGAGGGAAAAGTTTTCATATGCACAGTTTGCGGAAAAAGTCATAGCGCAAAATGGTTGCTGAATTCTCATTTGTTGACACACGAGGGTAGAGAGCCCTATTCTTGCGACATTTGCGGGAAGCGATTCACTCACAAAGCAAACTATGAGTCCCACTTGAGAATTCATACAGGAGAAAAACCGTATGCGTGCAAGATTTGCGACAAAGCTTATCGCACAATTTCAAGCTTGCAATCGCACAACAGAACACACATGAATCCAGAGGATAGAGGCACAATTTGCAAAATCTGCGGAAGGATTCTGGCGAGTCGATCGTCATTCGCCTCTCACATGATGATACATACAGGCGAGACACCTTACCATTGTGCTGATTGCGGCAAAAGCTTCATTCGTAAGAAACAGATGATTCGTCATACGCGTGAGCACTGTATGGACAAGCCTCTCTCAAGCATTTGA
- Protein Sequence
- MGRSRHKQLSFKCKSITDYLVERREIQQPDDGNRHSKPPDSTRSSHFGKKQATTPSHTGNKLPTLSYYKDLNSSLNAGRRVLKIVLVRCDGVKTNTKFNPTTTRKNKNKNGLSITNEMLLSSTSEYNTPEADECGYFSTKSHIPAMSRAQLENLKHEQLVLKEETIMDDDIDCAQSRRPKMEHENSSSSLQQTQLFASSNSQGCATDANVHQLFSRSETGSLAEYKQEMPLGDDPLVIDYEAVLENQMKPQKFDSSEAEISDPYRSFGMHTVHCKIVHQKNKPLPCKVCDERFIYPFQLKQHMMKHTGERPFGCQICGKNFVYNSHLTKHMKQHSMGNPLSCKVCDKEFSSVTDLDVHVTEKSCKKLYLCKICGKDCPHKTFLDLHLLEHKGEEPLCCDYCGKKFIDKSSLKQHLRIHTRKKPFSNNVCNKSVTRKDGLNLLTMTHNSHLEVQDGTFSCKTCGNVFANRIKSQQHEKMHPSAEGLSTCDECGKELESKTSSIQPIGTHEDDELIECNVCKKNFLSKHALRLHSMLHTGQWRFSCEVCGKGLRSKSEWTQHMRIHTGEKPFSCSICGRNFRTKAILTNHMNTVHKEKEEIPCKFCKKSFSRAWLLEQHLRMHTGEELFLCDICKKSFTLKSTLKTHMLLHQEDNPYSCGLCEKKCTSRSELDAHVAYRHEGKVFICTVCGKSHSAKWLLNSHLLTHEGREPYSCDICGKRFTHKANYESHLRIHTGEKPYACKICDKAYRTISSLQSHNRTHMNPEDRGTICKICGRILASRSSFASHMMIHTGETPYHCADCGKSFIRKKQMIRHTREHCMDKPLSSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -