Ehay045477.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Eretmocerus hayati
Gene Symbol
PRDM13
Assembly
GCA_029851415.1
Location
CM056743.1:164597470-164606015[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 3.5e-08 7.6e-06 27.8 1.9 1 23 476 498 476 498 0.97
2 22 2e-05 0.0042 19.1 0.3 2 23 506 528 505 528 0.96
3 22 0.51 1.1e+02 5.3 1.0 1 23 534 556 534 556 0.97
4 22 3.4e-05 0.0072 18.4 6.1 1 23 562 584 562 584 0.97
5 22 1.3e-05 0.0027 19.8 0.9 1 23 590 612 590 612 0.97
6 22 1.1e-05 0.0025 19.9 0.6 1 23 618 640 618 640 0.97
7 22 1.1 2.4e+02 4.2 0.0 1 23 718 741 718 741 0.96
8 22 0.087 19 7.7 4.8 1 23 755 778 755 778 0.97
9 22 0.018 3.9 9.8 1.2 1 23 803 825 803 825 0.97
10 22 6.1e-05 0.013 17.6 1.0 2 21 832 851 832 854 0.90
11 22 0.013 2.7 10.3 0.2 1 23 860 882 860 882 0.96
12 22 0.00025 0.053 15.7 0.4 1 23 888 910 888 910 0.98
13 22 0.00029 0.062 15.5 1.6 2 20 917 935 916 938 0.92
14 22 0.003 0.64 12.3 0.1 1 23 944 966 944 966 0.97
15 22 0.0025 0.54 12.5 0.2 1 23 972 995 972 995 0.97
16 22 0.0018 0.39 13.0 2.8 1 23 1110 1132 1110 1132 0.98
17 22 0.0038 0.82 11.9 6.8 1 23 1138 1160 1138 1161 0.96
18 22 0.00038 0.081 15.1 0.6 1 23 1167 1189 1167 1189 0.96
19 22 5.8e-05 0.012 17.7 0.3 1 23 1195 1217 1195 1217 0.97
20 22 1.4e-05 0.003 19.6 3.5 1 23 1223 1245 1223 1245 0.97
21 22 6.7e-06 0.0014 20.6 0.5 1 23 1251 1273 1251 1273 0.98
22 22 0.00038 0.082 15.1 4.9 1 23 1279 1302 1279 1302 0.96

Sequence Information

Coding Sequence
ATGGATAATTTTAGCAGTGAGATGAGGCACTTACTTGTAAATTCAGCCAACGTGAACGTGGTACCCAAATTTCCATATGAATACCCAAAAAAAAGCGTTTCTTCGACACATCCTGGAAACTGCGACGAGGAGCCCCGTTGTTTATTCAGCAAAAGAACACGAGGGAAAATGGAGGCTCAGGAAACGTCCGATGTAGAATATCTTATAAGGACCATCAATGAAGAAGGAAAAGTTGTGTACAAGAGTGCAAATTTGATAAGTTCAAATGATGGTGCAACAGTACCGATTGATGGAGATAGCACAACAGAAGGATCACATGAAAACATGCAGATTTTGACAATGGAAGTAGAAGGCGATCCCCAAGTAGTTGGCAAGGATATCATACTTGAGCTGTGCAGAATATGTGGAGGTGGAAGCGATAGGTACATACATGTTTTTGATGATGAAGGTTTACAACATGATTTACGGGGCAAAATTCACAGGCACCTTCCGCTCAAGGTTTCAGAAGGAGATAGTTTGCCTCTTCAGATATGTTACAACTGTGCCACCACTCTTCTAGCATTTGATGATATGCATAAAAATTGTCTTAATACTCAGACGCGCTTAAGGGATATCGTGTCAAAGTTTGTCTCTAAAACATCAAATGCCCACCATGACACAAGCCTAACAAATGACCTCATAGCAACTCTGGAAGGAACTGAAGACTCCAAAATAGAAGTGATACAGGATGACAGCAGATCCAATGGAGTGGATGAATTGTTTGAAGCATTCAGCCCCGAAACATCCAACAGattcGTGAACCCCAAAGACATCCATTTGATCACCGTTGTCGCAGATGCACCCAGAACTGAGATAGCAGAACCGCCCAAAATCGCGAGAAACCCGAAGATTAAAAACGTGAAAACCAAATTGTTTAAAGCCGGGGCAACAACCAAGTCTAAAAACGTAAAAGCAGAATTGGCCAAAGTCGCTGTAGCAGTAGAGGCGAAAGTAGAAAATTCCAAGATACCTGACACTTCTATATCTCATCCTTTAGTGAGTGAAAAATCATCAGCATCTGCACCCAAAGCTATCAAAGCTCACAGAAGCCCTCAGAAATTTGAAACTTCTATCCTAAGCCGCCCCAACACCGCAATATCATCAGGGTTGCAAGTCAAGGCAGCAGTTCCAGTGAAGGATATGAAAAAGCTCTTTCCATCTTTTCTTCGTCTTTCGAACACTAACAAATCGTCGGAGTGCGCATCGACTTCTTCAGAAACAACGAAGGGCGCCAAGTTACCCAACACTTCCACAGTGGATCGTGACGATAATGACGAGCCATCTGAGCCACCATCCAAACTATCTCAAGCACTAATTGAAATAGAGATGAAGAAACAAGAGCTCAAAGAGAAGCACAAACTCGAGGTGCAGAAAAAAAGGAGGAGATTCGCGTGTTTAGACTGTGGCaagaagttttcaaaaaaatacaatCTGAAAGTGCATATGAGGACCCACGAGAATATTCAAATTAGAATTCAGTGCGGTTCATGTGACAAAAGTTTCAACGCGTTGTCCTCGCTGAATAGGCACATGAAGGTAGTACATTTGAATCTCAAAGAGCACCCTTGCTCGTTCTGCAATTTGAAACTTGCGTCGAGAGCAAGTCGAGAGGAACACGAAAGAACTCACACGAACGAGCGTCCGCACCGTTGCGAGCACTGCGGCAAGAGGTTCAGACAGAGAGCTTCGCTAAACGTCCACAAAAGATTCCACCAGTTAAACTACGAGTTTCCATGCCAAGTGTGCAAGAAGAAATTTGTCAGGAAGCAAGACTTGGAGAGGCATGGAAAGATCCACAATAACGAGAAGCCTCACCCGTGCAAGATCTGCGGCAAGAGGATGAGCAATCCTTCCTCGTTGGCTAGGCATTTGAAGATTCATCAAAAAGAGAAAAGAAACATTTGCAGAGTATGCTTTGAGATAGGATCCGATGCAGAGGACGATGGAGCCAGGCCGGACGACTTTGACtacatcaacgacgaagaggaagaagaagatgacGACGAAGACGAAAACAGTAAGAACTCTGAGCAAAAAAAATCTCGCAACTCCACGAAACGTACTGCCCCGAAGAAATCTCAGAAGTCCCAAAATCCAGTACAGCCACGCTTGTACCAGTGCGGTGCTTGCGAGCAGTTTCTCCCGACCGAGGATGAGATGATGGATCACATATCTTCAGCGCACTCAGATTTGATCCAGAAAGGATCTCTCAATCCCATAATGTTTGAGTGCGCCACATGTTGTCGGCAATTCGGTAAGCAGGCGCATCTTCTTCGTCATATGAAGCGCATGCACAGCGGTGAAAAATCTAAGGATGAGGAAGGCATCATCCATGACTCCAAGATTTACGTTCGCTCAAGCCGATACTTCCATTGCGACACCTGCGACGTTGTAATGAACCAACGCTCAGCTTTCGTTCGCCACCTGAGGCTCCACTCCCGAGTAAGGCCCGCCAAGTGTGATGAGTGCGATAAAACTTTCAGAGTCACCTCGGACCTCAAGCGACACAAGGATGATGTGCACCGCAAGATTAAGCGTCATCCATGTGACATTTGTGGTACCATGTTCGCTGCCAAGGGCACTCGTGATGCGCACCGAAGAATACATACGGGCGAAAAGCCCTTCCCTTGTCCaatttgtttcaaatatttcagaTCACCCAATTTACTGGGAATTCATAAGAAGACTCACACAGACTACAGACCGTGGAAGTGTACACACTGCGAGAAAGCATTCAGAACGAAGCAAAAGCTCGAGACTCACTTGCCAATTCATACTGGTATTAAGCCCTACGTATGTGAAGTATGCCTCAAGAGCTTCCCTGCTATGGGCGAACTCAATAGGCATAAGTCTGTTCATACTGAGGAGAGGCCCTACGAATGTCTCGCTTGTGGAATGGCATTCAGACTCAATAGATACCTCAAATCTCACATACTTAAAGTTCACAAGAAAAATGCAACTAAGCTCTTGGCTAAcaaaaaatcaattttgttggaaattcaTGTAGCCAAGCCGTCACTTCCTAATGAGCCAGAACATGATACCGAGCAATTAGCCAAGACTGAGACCTCATCATCTTTAATTAGTCGCCGGCCTGTCCGATCTAGAACGAGGTCCAAAATGAAGCAAGAAGTAAAGTGTGAAACCCCGGGTCGGGAATCCTCAAACTCGCCCAGCTCCGTTGACCCCAGAAATCCTACGATTGACTTTGATGAACCCGAACTGCCAGATCGTTCGGAGGACTTGAAAATCGAAAGagtagagaagaagaaaaaaggcAATAAGCGACACGAATGCGAACAGTGCAACTTGCAGTTTCGAATGCTTTCAAGCTATGAAAACCATTTAAGAAAACATACCGACGATCGGCCCTTCACTTGTCACATTTGCGGAAAACAATTTGGTCAAACGGGAAGTCTCTATTACCACCTAAAGCATCATCACGGGGGAGTAAAAAATCACGCGTGCGATATTTGTGGGCGTCGTTTCGCAATGAAGACTGCAATGATGGACCACAGAAGGATTCATACCGGCGAGAGGCCCTTCATCTGCGACTCATGCGGTAAAGCTTTCAAAACGAGTGCCTCGCTCTATGTTCATAGCAAAGTTCACAAGGATGAGTATCCGTTTGAGTgcagtttttgcaaaaaaactttCAAGTATAAATCGCAACTCAATAGTCACTTGACCATACACACGGGCGAGAAAAATCATGTGTGTGAAGTTTGCGGTAGAGGTTTTGGTGTTAAGAATGAGCTCACCAGGCACTTGCGCACACACTCGATAGAAAAGCCCTTCACCTGTGACGTCTGCGGGCTTAGCTTTAAACAAAAAAGGTATCTCAGAAGTCACTGCCGAACTAGGCACAAAGTCTCAATTTAA
Protein Sequence
MDNFSSEMRHLLVNSANVNVVPKFPYEYPKKSVSSTHPGNCDEEPRCLFSKRTRGKMEAQETSDVEYLIRTINEEGKVVYKSANLISSNDGATVPIDGDSTTEGSHENMQILTMEVEGDPQVVGKDIILELCRICGGGSDRYIHVFDDEGLQHDLRGKIHRHLPLKVSEGDSLPLQICYNCATTLLAFDDMHKNCLNTQTRLRDIVSKFVSKTSNAHHDTSLTNDLIATLEGTEDSKIEVIQDDSRSNGVDELFEAFSPETSNRFVNPKDIHLITVVADAPRTEIAEPPKIARNPKIKNVKTKLFKAGATTKSKNVKAELAKVAVAVEAKVENSKIPDTSISHPLVSEKSSASAPKAIKAHRSPQKFETSILSRPNTAISSGLQVKAAVPVKDMKKLFPSFLRLSNTNKSSECASTSSETTKGAKLPNTSTVDRDDNDEPSEPPSKLSQALIEIEMKKQELKEKHKLEVQKKRRRFACLDCGKKFSKKYNLKVHMRTHENIQIRIQCGSCDKSFNALSSLNRHMKVVHLNLKEHPCSFCNLKLASRASREEHERTHTNERPHRCEHCGKRFRQRASLNVHKRFHQLNYEFPCQVCKKKFVRKQDLERHGKIHNNEKPHPCKICGKRMSNPSSLARHLKIHQKEKRNICRVCFEIGSDAEDDGARPDDFDYINDEEEEEDDDEDENSKNSEQKKSRNSTKRTAPKKSQKSQNPVQPRLYQCGACEQFLPTEDEMMDHISSAHSDLIQKGSLNPIMFECATCCRQFGKQAHLLRHMKRMHSGEKSKDEEGIIHDSKIYVRSSRYFHCDTCDVVMNQRSAFVRHLRLHSRVRPAKCDECDKTFRVTSDLKRHKDDVHRKIKRHPCDICGTMFAAKGTRDAHRRIHTGEKPFPCPICFKYFRSPNLLGIHKKTHTDYRPWKCTHCEKAFRTKQKLETHLPIHTGIKPYVCEVCLKSFPAMGELNRHKSVHTEERPYECLACGMAFRLNRYLKSHILKVHKKNATKLLANKKSILLEIHVAKPSLPNEPEHDTEQLAKTETSSSLISRRPVRSRTRSKMKQEVKCETPGRESSNSPSSVDPRNPTIDFDEPELPDRSEDLKIERVEKKKKGNKRHECEQCNLQFRMLSSYENHLRKHTDDRPFTCHICGKQFGQTGSLYYHLKHHHGGVKNHACDICGRRFAMKTAMMDHRRIHTGERPFICDSCGKAFKTSASLYVHSKVHKDEYPFECSFCKKTFKYKSQLNSHLTIHTGEKNHVCEVCGRGFGVKNELTRHLRTHSIEKPFTCDVCGLSFKQKRYLRSHCRTRHKVSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-