Basic Information

Insect: Eretmocerus hayati
Gene Symbol: PRDM13
Assembly: GCA_029851415.1
Location: CM056741.1:17368228-17385489[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 33 0.032 6.8 9.1 2.5 1 23 351 373 351 373 0.96

2 33 7.7e-06 0.0017 20.4 1.0 2 23 381 402 380 402 0.96

3 33 0.0031 0.67 12.2 0.4 2 23 409 430 408 430 0.96

4 33 6.1e-05 0.013 17.6 0.9 3 23 437 457 436 457 0.98

5 33 0.00047 0.1 14.8 0.2 2 23 465 486 464 486 0.97

6 33 0.00011 0.023 16.9 0.5 1 23 492 514 492 514 0.98

7 33 8.4e-06 0.0018 20.3 3.1 1 23 520 542 520 542 0.96

8 33 9e-05 0.019 17.1 1.9 2 23 549 570 548 570 0.97

9 33 3.2e-06 0.00069 21.6 1.1 1 23 576 598 576 598 0.98

10 33 0.027 5.8 9.3 4.7 1 23 604 626 604 627 0.96

11 33 0.00025 0.053 15.7 0.5 2 23 633 654 632 654 0.96

12 33 0.00042 0.09 15.0 0.4 1 22 660 681 660 681 0.95

13 33 0.002 0.44 12.8 0.2 2 23 689 710 689 710 0.97

14 33 0.00044 0.095 14.9 1.2 2 23 718 739 717 739 0.97

15 33 0.00035 0.076 15.2 1.7 1 23 745 767 745 767 0.97

16 33 9.4e-06 0.002 20.2 3.1 2 23 773 794 772 794 0.96

17 33 0.0052 1.1 11.5 0.3 2 23 802 823 801 823 0.96

18 33 1.3e-05 0.0027 19.7 2.3 1 23 829 851 829 851 0.99

19 33 1.7e-06 0.00036 22.5 1.1 1 23 857 879 857 879 0.98

20 33 4e-06 0.00085 21.3 2.0 2 23 886 907 885 907 0.97

21 33 0.00025 0.054 15.7 0.8 1 23 913 935 913 935 0.96

22 33 2.8e-05 0.006 18.7 1.2 1 23 943 965 943 965 0.98

23 33 0.0013 0.28 13.4 0.6 1 23 971 993 971 993 0.96

24 33 0.00052 0.11 14.7 0.0 1 23 999 1021 999 1021 0.95

25 33 2.3e-06 0.0005 22.1 0.7 1 23 1027 1049 1027 1049 0.98

26 33 2.9e-06 0.00062 21.8 1.3 3 23 1057 1077 1055 1077 0.98

27 33 0.0003 0.065 15.4 2.0 1 23 1083 1105 1083 1105 0.97

28 33 7.2e-05 0.015 17.4 0.2 2 23 1115 1136 1114 1136 0.97

29 33 3.1e-06 0.00067 21.7 0.3 2 23 1143 1165 1142 1165 0.95

30 33 0.0022 0.46 12.7 1.0 1 23 1171 1193 1171 1193 0.95

31 33 0.00011 0.024 16.8 0.5 1 23 1198 1220 1198 1220 0.97

32 33 1.1e-05 0.0023 20.0 0.2 2 23 1227 1248 1226 1248 0.96

33 33 0.00035 0.075 15.2 1.3 1 23 1253 1276 1253 1276 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	33	0.032	6.8	9.1	2.5	1	23	351	373	351	373	0.96
2	33	7.7e-06	0.0017	20.4	1.0	2	23	381	402	380	402	0.96
3	33	0.0031	0.67	12.2	0.4	2	23	409	430	408	430	0.96
4	33	6.1e-05	0.013	17.6	0.9	3	23	437	457	436	457	0.98
5	33	0.00047	0.1	14.8	0.2	2	23	465	486	464	486	0.97
6	33	0.00011	0.023	16.9	0.5	1	23	492	514	492	514	0.98
7	33	8.4e-06	0.0018	20.3	3.1	1	23	520	542	520	542	0.96
8	33	9e-05	0.019	17.1	1.9	2	23	549	570	548	570	0.97
9	33	3.2e-06	0.00069	21.6	1.1	1	23	576	598	576	598	0.98
10	33	0.027	5.8	9.3	4.7	1	23	604	626	604	627	0.96
11	33	0.00025	0.053	15.7	0.5	2	23	633	654	632	654	0.96
12	33	0.00042	0.09	15.0	0.4	1	22	660	681	660	681	0.95
13	33	0.002	0.44	12.8	0.2	2	23	689	710	689	710	0.97
14	33	0.00044	0.095	14.9	1.2	2	23	718	739	717	739	0.97
15	33	0.00035	0.076	15.2	1.7	1	23	745	767	745	767	0.97
16	33	9.4e-06	0.002	20.2	3.1	2	23	773	794	772	794	0.96
17	33	0.0052	1.1	11.5	0.3	2	23	802	823	801	823	0.96
18	33	1.3e-05	0.0027	19.7	2.3	1	23	829	851	829	851	0.99
19	33	1.7e-06	0.00036	22.5	1.1	1	23	857	879	857	879	0.98
20	33	4e-06	0.00085	21.3	2.0	2	23	886	907	885	907	0.97
21	33	0.00025	0.054	15.7	0.8	1	23	913	935	913	935	0.96
22	33	2.8e-05	0.006	18.7	1.2	1	23	943	965	943	965	0.98
23	33	0.0013	0.28	13.4	0.6	1	23	971	993	971	993	0.96
24	33	0.00052	0.11	14.7	0.0	1	23	999	1021	999	1021	0.95
25	33	2.3e-06	0.0005	22.1	0.7	1	23	1027	1049	1027	1049	0.98
26	33	2.9e-06	0.00062	21.8	1.3	3	23	1057	1077	1055	1077	0.98
27	33	0.0003	0.065	15.4	2.0	1	23	1083	1105	1083	1105	0.97
28	33	7.2e-05	0.015	17.4	0.2	2	23	1115	1136	1114	1136	0.97
29	33	3.1e-06	0.00067	21.7	0.3	2	23	1143	1165	1142	1165	0.95
30	33	0.0022	0.46	12.7	1.0	1	23	1171	1193	1171	1193	0.95
31	33	0.00011	0.024	16.8	0.5	1	23	1198	1220	1198	1220	0.97
32	33	1.1e-05	0.0023	20.0	0.2	2	23	1227	1248	1226	1248	0.96
33	33	0.00035	0.075	15.2	1.3	1	23	1253	1276	1253	1276	0.96

Sequence Information

Coding Sequence: ATGATACAGCTTGGAGAGGGATGTGGTATTTCACTGATGATGCCTCATATATTGGAAACATCTGGTCAGAAAGGAGAAGGAGCTATGGAGCTGCAGAAAGATGCGGATGCGGTTGATATTGGCCGTGAAAAAGTACCAGACACAGAGAGTAGAGAGATACGCTCCTTAGCATCAGAATCTTCAATTGAATCCGAATTGACAGTCAAGACGCTGACAAATAGTCCCGCCAGCATTGAACCTGCATCTGTGAGACTATCAAAATTTGTGAATAACCTGATGTTACATGAGTCATCACAACAGCTTAGAAATCTTCAAACGAGTTCTTCCTGCTCAAGACTTTGTTATGTTATCCTAGAAAGGCAAGATTTTTCCACGGGATTGCATACAGATGTGCTCCAAAGTGGTAATCATGATGTTGAGAAAAATGATCCACCTCGAAGAATCGAATCACCCATAGACGAGCCTTTGACTACCGAATGTGAAGCTTTTGCTGAGGACTGTTTGAAGGATGAAAAGTTGAGGATAATGGAAGTAAAAATGAACGATTCAGGCTCTGAACGATTTGATTCGGATAACGATGGAGCAACCATCTCTGAGTTGGATATCGACGCAGTTGATATTGATTGCAAAATGACATTAGAGGATTCATTTGAACGCAGAATGATTGAGCGATCGACGAGTAATTCCTTAAAGGTTGAATTTGAAGCCAAAACAGATAGATCCCTGGAGGATAATAAACCAGACTTTTTGGCGGAAGGACATGAAGAATTTACTCCAACTTCTTGTTGTCCAGCAGTTTGTGGTCCGACGGAGATGCAAAATGCTATCACGTCATCACACATTGGTCACGAGCAGTATTCAAAACTTGGAAATTCTTCACATCAGTCGCGCAATATATATGAGAACAAAATCAAGCATTTAAGCAAGTACATGACACGCTCGAATAAGCTTCCTAGCATCAAATTACACTCGCGTCCATCGAGTGGTAAACAATAtctcaatgaaaaaattcggaagagTCATGAGGAAACGCATACGGTGAAGAAAGATTTCGTCTGTCACATATGTGGCTTGACATGTGTGCGAAGAGGTCGATTGGAATTTCACATAAAACTGCACTCAAGGACACCGAAGGTCTTATATTGCGATGTCTGCAACCAAAGCTTTCCCCACAAATCGAACCTTGTTCGGCATCTAGGTACGCATACAACTGGCAGACCTTTATCATGCAAAATCTGTGATGCCCAATTGAAGAACGAAGCCTCAATGACTCGCCATATGAAGTTGCACGATAAAAAACCTCTACTGTGCAACGTTTGCAATCAGACATTCAAAACCGAGAGATCTTTGTTTGCTCACATGAAAGCGCACTACAAAGGCGATAAGCTGCTTTCGTGCGAGGTATGTGGTAAATTGTTCGAGATCAAAGAAGAATTCGAAAAACATATCAAAATGCACCAAAATGAAAGCCAATACGAGTGTGACACTTGCGGCGAACGCTTTACACGAAAACGGATTCTGAGCCAACACATGCTTGTACATGAAAATCTAATGCCATTCAAGTGCAAAGAATGCGGTAAAGACTTTCGTAGCCGGGGAAACTTGAAAGTGCATTCAATGCATCATACAGGATATGGGCTTTTGTATTGCAAGCTCTGTGGTAAAAACTGCCCCAGTAAAATTGATTTGGCAAGACACACGAGGACACATACCGGCGAAAAACCGTATTCATGTGACATATGCGGTAAAAAATTTGGCCGCAAGTACAGTCTGGTGATGCACTCTAGAACGCATACGGGTGAAAAACCTTTTACATGTCAAGTCTGTGCTAAGGGCTTTGCGTGCCGATCAAATTATCGACAACACGTGAGAATGCATCACACAGGTGATCATTTACCATGCAGTAAATGCAACAAGAAATTTGCTAACAAGAAAATTCTACGCGCGCACATGGCTATGCACTCGCCCGTCAAACTTTTCTCGTGTAAGAACTGTGACAAAAGCTTCAAAGTTAAGAACGCCGTCAGAGACCACATATTGACCCGCGAGTGTAAGGAACTTCCTCGTTGTGATATTTGTGGCCGGGATTTTCTAAGCAAGATTCTGTTAGAAAGACATATAATACGGCACTCGGAAGCGCCTCAGATTCTCTATTGTGATATCTGCAACAAAAGTTTCTCAATCAGAGGGAGACTTGTTCATCACCTACTTACGCATATAATCGGCAAACCGTTTTCATGCAAAATCTGTGATTCTAAATTCAAAAGGGAAGATACTATGAAACGGCATTTGGAGTTACACACCAGAGAGCGTATATCGTGCAAGGTTTGTCGTAAGACATTTAAAAATAAAAGATCCTTATTCACTCATATGAGAGAGCACTATAAAGGTGAGGAGTTGCTCTCGTGCGAGGTCTGCGGGAAATTGTTCGAGTTTGAGGAACAATTCGAAGAGCATAAAAAGATGCACAACCGCGTACGGACTTTCAAATGTGACACTTGCGGCaaaaattttggggagaagAAAACTTTGCGCAAGCACACGCGTGTACATGAAGATGTTAAACCTTTCAAGTGTGAGGTATGCGACAAGGCCTTTCGCACTAGGGGAAATCTGAAATTGCACTCAATGCGGCATACAGGAGAAGGACTCTCATACTGCGAGGTGTGTCATAAAGGCTTCAATACAAAGAGCTATCTGATATTGCACATGAGGTCACATACTGGCGTAAAAGCGTACTCGTGCAAGGTTtgcgataaaaatttcatgtctaAGGCTAGTCTATTGACTCATTCGTCGGTTCATACGGGTACAAGATCTGAGACTTTCACATGCAAGTTTTGCGATCAAATATTCACACTGAAGTCTGAACTTGAGCAGCATGTACAGACGCATACGGGTGAAAAGCCTTACTTGTGTCGCATTTGTGACAAGAACTTCCGAATCCGCAACGGTTTGGCAAACCACAAGAGAATACATCGAAGAAACAAGTTCTTCCCATGCAATATTTGtgacaaaaaattcatcgcaCAAGAAAGTTTAGATGCGCACCTGGCTGCGCACGTGGGTAAAAGACTCTTCCCGTGTACAGAGTGTGATAAGGGTTATAATAACAAGTTCGCTCTCAAAAACCACATGCTGACTCACGAGGGTAAAGAGCCTTTCGGATGTGACTATTGCAAAAAGCGTTTCGTCTCAAAGTACAGTTTGAAAGTTCACATGAAGATACACACAGGAGATAAGCCTTTTGCATGTGAAATTTGTCACAGTCGCTTTACCCAAGGTAGTACTTTGAAAGGACACATGAAGACGCACCAGAAGCCAGACGAAAAGGCCTATGTACCGTGCAAAGTGTGCGGAAAGCGTCTGGGTAACAAATTCTCATTGGAAATGCACATGAGAATCCACACAGGTGAGAAACCTCTTCAATGTGCAGACTGCGGTAAAAGCTTCAGAACGAAAAGCAATCTTATCCCTCATTTGCGATTGATGCATATGGGTGAGAGGCCATTCTCTTGCAAATTTTGTAGCTTAAATTTCGGATCTGCGTTTAGTCTCAAGCGGCACATGGTAGCACATGAAAAACCTAAATTCGAATGCACGGCCTGCGGGAAGAAACTTCCTCGCAAGATGTCCTTAAAGCGTCACATGGAGCTACATGAACGTTACAAGTCTACAACTTGCAAAATCTGTGGACGAGCCTTTCCAGACCAGGTTTATCTAGAGAAACATGTAAAACTGCACGATGgcacaattttttcatgcaacTCGTGCGAGAAAGAATTCTTCACGCAAGATGGTTTGAGACGACATGTGATAAAGAAACATGAAACTCAGAGACCCTATGCACGATGGCGACGTCTAAAAcaccgaaaaatttcaaaggatgAAACGAAAGAAAAGCAGTCCAGTTGA
Protein Sequence: MIQLGEGCGISLMMPHILETSGQKGEGAMELQKDADAVDIGREKVPDTESREIRSLASESSIESELTVKTLTNSPASIEPASVRLSKFVNNLMLHESSQQLRNLQTSSSCSRLCYVILERQDFSTGLHTDVLQSGNHDVEKNDPPRRIESPIDEPLTTECEAFAEDCLKDEKLRIMEVKMNDSGSERFDSDNDGATISELDIDAVDIDCKMTLEDSFERRMIERSTSNSLKVEFEAKTDRSLEDNKPDFLAEGHEEFTPTSCCPAVCGPTEMQNAITSSHIGHEQYSKLGNSSHQSRNIYENKIKHLSKYMTRSNKLPSIKLHSRPSSGKQYLNEKIRKSHEETHTVKKDFVCHICGLTCVRRGRLEFHIKLHSRTPKVLYCDVCNQSFPHKSNLVRHLGTHTTGRPLSCKICDAQLKNEASMTRHMKLHDKKPLLCNVCNQTFKTERSLFAHMKAHYKGDKLLSCEVCGKLFEIKEEFEKHIKMHQNESQYECDTCGERFTRKRILSQHMLVHENLMPFKCKECGKDFRSRGNLKVHSMHHTGYGLLYCKLCGKNCPSKIDLARHTRTHTGEKPYSCDICGKKFGRKYSLVMHSRTHTGEKPFTCQVCAKGFACRSNYRQHVRMHHTGDHLPCSKCNKKFANKKILRAHMAMHSPVKLFSCKNCDKSFKVKNAVRDHILTRECKELPRCDICGRDFLSKILLERHIIRHSEAPQILYCDICNKSFSIRGRLVHHLLTHIIGKPFSCKICDSKFKREDTMKRHLELHTRERISCKVCRKTFKNKRSLFTHMREHYKGEELLSCEVCGKLFEFEEQFEEHKKMHNRVRTFKCDTCGKNFGEKKTLRKHTRVHEDVKPFKCEVCDKAFRTRGNLKLHSMRHTGEGLSYCEVCHKGFNTKSYLILHMRSHTGVKAYSCKVCDKNFMSKASLLTHSSVHTGTRSETFTCKFCDQIFTLKSELEQHVQTHTGEKPYLCRICDKNFRIRNGLANHKRIHRRNKFFPCNICDKKFIAQESLDAHLAAHVGKRLFPCTECDKGYNNKFALKNHMLTHEGKEPFGCDYCKKRFVSKYSLKVHMKIHTGDKPFACEICHSRFTQGSTLKGHMKTHQKPDEKAYVPCKVCGKRLGNKFSLEMHMRIHTGEKPLQCADCGKSFRTKSNLIPHLRLMHMGERPFSCKFCSLNFGSAFSLKRHMVAHEKPKFECTACGKKLPRKMSLKRHMELHERYKSTTCKICGRAFPDQVYLEKHVKLHDGTIFSCNSCEKEFFTQDGLRRHVIKKHETQRPYARWRRLKHRKISKDETKEKQSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -