Basic Information

Gene Symbol
snpc-4
Assembly
GCA_029851415.1
Location
CM056743.1:21796766-21807343[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 1.1e-11 3e-08 35.4 0.6 1 44 272 317 272 319 0.96
2 4 2.4e-06 0.0066 18.3 0.1 2 43 327 372 326 375 0.95
3 4 2.9e-12 8.1e-09 37.2 0.0 1 45 381 426 381 427 0.94
4 4 1.1e-09 3.1e-06 28.9 0.5 1 40 434 474 434 476 0.84

Sequence Information

Coding Sequence
ATGATGGAGGACGAGGATAATCAGTCACTGATCGATGACATCAGAGCTTTGGAAAATGTTTTGGAACCAAAAAAGGATCCAATTACCCCTGAAAGTCCTCAGAAAAAACATTTGGAGCCAATTGAGAATCCTTACCCCAAAGAAGAAGTACAAATAGAAGAAAAATCTCCAGAAGATCAAATTGAGTCTGATGGAGAACTTGTTATCGATGACGATGATTATGAATCTCTAGATTGCAAAGATCTTGGTGATTTACTAGAGCTGAACAAAAAAATGCTTGAACTCATGACTAATGCACGACAAAAATTGTCTAGCCTTCTTGAGGAATGCAATAAAAGACAACGCATCGTTGAGGaacaaatttccaaatattcaaaCACTAATCATACTAAGATAATTTGTTTCAATGCTGGTATGCCTTACTTCAAGGACAAAAACTATTTTAGTGCTCCACGAAATGAGGACACAAAGACAAAGATGAAAAATGGTGAACTCCGTTTAGCTGAATTGCAACGAATTCAACGTTGGAGCCAACATGACAAAAGTACTATGTTAAATATAATAAAAGACGAAGTGatagaaattctcaaaaacaaaGGTGAAGTggatgatgttgatttggaTGATTCCATTCACAAAACTAGTCAATTACCTCCCATTGTGCGAGAAGCCATCGGATCATTGGGGACAATGAAATTTGATTGGATGAAGGTGTCTAATGAAATGATGAAGAAGGACAAATATCTTGAATGTAGGCATAGTGCAGAAGAATGTGAAGTGATGTGGAATGTATTTCTGCATCCAGATATTAATAAACAAAGATGGACTCAAAAGGAAAATAAAAAGTTGAGTCAAATAGTTAAGGATCACAATTTTGAAGACTGGGATTCTATTGCTAAAGAACTTGGAACACAACGAAGTGGATATCAGTGTTTTGTCAGATACAACACCAACAATTGGAAAAATTTAATGAGAGGTCAAGCCTGGTCCTCGGAGGATGATAAAACTCTCACTCTTTTagtctcaaaattgaaaattggagaCTATATACCATGGGGAAATATTGCTAGTTTCATGACAAAATGGACAAAGCAACAAGTGTACTTCCGGTGGGTGTATAGTTTAGCTCCGCATTTGAAAAAAGGAAGATTTTCGCAAGAAGAGGATGATGTTCTACTTGAAGCAGTCGAAAAATATGggcaaaatttttgcaagataTCAGCTCTTATAATGACTAATAGGACAAATATCCAATTAAAAGACCATTATCAGACGTTAACTAGTAGAAAAGAGCAGGCTAAGAAAAATTGGACTTTAGAAGAAGATAAGCAACTAACTGAATTGTACGAAAAATACGGTACAGACTGGGCAAAGATCATTACAGAAATGGATTCAGAAGTGACTCGAATTCAAGTAAGACATCGGCACGCAGCTCTCCAACGTTATCGACGAAAAGGTATCGGTTTAAAAAAGATAACCAGGGATGAACCGATTGTCGACCCTCTCTCAACTGCTACCACTTTGACGTATACTAATAGTTCACCATGGTCCCGTGATAATAGAGAAATATTGGTCAAGCATTTGAAGATCGACGATCAGTTAataaaattcttccaaaaagatgaaaaaagtaAAAGGTCGAAAACTATAAAGTCGTACGATCCTGATGATTTGAAAAGAGACACAAGAAagattcatcaaattctcacGAAAATGGGAGCTAATTTGGAGATTCCGGAATGCATTATAGATGAAAATTCCGAGTTGACTGAAATGGATCTTGAATTATTGAGTTCTCTGGAGAACTATACTTTACTACAAAAATTGAATGCAAACGAAAACGTGGAATTCGTAAGACAAATAATGTTTGGGCAGTCTGTATCGGTATCAGAAAAAGACCGATTCGTGCCTTCTTTACCATTCGGCTTTTGTAATCCTCGGCCTACCAAAAAACAAAAGAAATCAGATACTATAGATTGTTTTCTTGATACTGAAGAATATCATCACGTAGACGTTGAAATGGAATTGAAACCGAATAAACTCGTATCAGAATATATTGATGAAGATACCGATAACCAATTCGAGAAATTGAAAAGGATCTTAACTGAAAGCACGAAACCAAAAAAGGTCTTCAAGATTCGATGCCAGAGATTTGCCAACTCTTACCGTTTTGAAGAGATTTATGAAAATCCTGATGCAAACAACagTTCTTTTAGGCCACCCggggtctcgcgtacgctggtCTACGATTGGGATCTAAATAAAATGATCCCTCTTCATTTACCcaaagaagaaaaatttgcaGCAGAGAGTGTGCCATTAAATGTAATAGAACCAACTAGATCTTTATTGCAAGGATTCCAAGAACTCTTATTCAACTCTCAGAATTTTCCTACATTCGCAAGCTCTGATCCCTCTTGTACATTGACTGTCAAAGGACGTGAAGCGATGCAATCATTCAAGAGAAGATATCAACAACTATTTACCATCCCTATTGGTTTATCGAGAATAGTACCTCCCGATACTGTGGATGAGAGTGCTTTCTTGccagttttggaaaaattgaaaaagaagagCACTAAGAGAAAACGAGGAGTGAAAAAAGAGCAATCAGATTCCGAAGATTCGGTGACCTACCTCAATGAAGATGATGATTCATAG
Protein Sequence
MMEDEDNQSLIDDIRALENVLEPKKDPITPESPQKKHLEPIENPYPKEEVQIEEKSPEDQIESDGELVIDDDDYESLDCKDLGDLLELNKKMLELMTNARQKLSSLLEECNKRQRIVEEQISKYSNTNHTKIICFNAGMPYFKDKNYFSAPRNEDTKTKMKNGELRLAELQRIQRWSQHDKSTMLNIIKDEVIEILKNKGEVDDVDLDDSIHKTSQLPPIVREAIGSLGTMKFDWMKVSNEMMKKDKYLECRHSAEECEVMWNVFLHPDINKQRWTQKENKKLSQIVKDHNFEDWDSIAKELGTQRSGYQCFVRYNTNNWKNLMRGQAWSSEDDKTLTLLVSKLKIGDYIPWGNIASFMTKWTKQQVYFRWVYSLAPHLKKGRFSQEEDDVLLEAVEKYGQNFCKISALIMTNRTNIQLKDHYQTLTSRKEQAKKNWTLEEDKQLTELYEKYGTDWAKIITEMDSEVTRIQVRHRHAALQRYRRKGIGLKKITRDEPIVDPLSTATTLTYTNSSPWSRDNREILVKHLKIDDQLIKFFQKDEKSKRSKTIKSYDPDDLKRDTRKIHQILTKMGANLEIPECIIDENSELTEMDLELLSSLENYTLLQKLNANENVEFVRQIMFGQSVSVSEKDRFVPSLPFGFCNPRPTKKQKKSDTIDCFLDTEEYHHVDVEMELKPNKLVSEYIDEDTDNQFEKLKRILTESTKPKKVFKIRCQRFANSYRFEEIYENPDANNSSFRPPGVSRTLVYDWDLNKMIPLHLPKEEKFAAESVPLNVIEPTRSLLQGFQELLFNSQNFPTFASSDPSCTLTVKGREAMQSFKRRYQQLFTIPIGLSRIVPPDTVDESAFLPVLEKLKKKSTKRKRGVKKEQSDSEDSVTYLNEDDDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-