Eoch033488.1
Basic Information
- Insect
- Eremobia ochroleuca
- Gene Symbol
- -
- Assembly
- GCA_949629135.1
- Location
- OX451414.1:3607140-3623312[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00052 0.051 15.1 0.9 1 23 321 344 321 344 0.92 2 12 0.35 34 6.2 0.2 2 21 382 401 381 402 0.93 3 12 1.1 1.1e+02 4.6 2.1 1 20 760 778 760 780 0.89 4 12 0.47 47 5.8 4.3 1 23 792 814 792 814 0.96 5 12 0.0036 0.36 12.4 1.0 2 23 820 841 819 841 0.96 6 12 0.93 92 4.8 1.1 1 13 864 876 864 885 0.74 7 12 0.0024 0.24 13.0 0.2 2 23 962 983 961 983 0.96 8 12 6.1e-07 6e-05 24.3 2.7 1 23 989 1011 989 1011 0.99 9 12 1.9e-05 0.0019 19.6 0.3 3 23 1018 1038 1016 1038 0.96 10 12 0.024 2.4 9.8 2.1 2 23 1045 1067 1044 1067 0.96 11 12 0.2 20 6.9 0.3 1 20 1074 1093 1074 1093 0.91 12 12 0.00064 0.063 14.8 2.0 3 23 1106 1126 1105 1127 0.95
Sequence Information
- Coding Sequence
- ATGGCAGACACATCAAGAAAAAGGTCGAGAAAGACGAAATTAGtgcctcgagagtgtgctgttGAAGAAGATGATCTTGAATTGCAGGTTCCAGAGCCGAAAGTACCTAAAACCATAAATCAGCCCACAAACAGAGAACCAACAAATAATGTGATAGAAAAACCACCAGAGCCAACCTTCTCAAAACCAGAAGAGGTGGACACGAGCgtcctaaaaaaaattaacgcaGCAGCTAGAGAAGATAATGAACCACAAACTAAGATATCTCCCCGAAAATTCGAgattaacattgaaatagaaTCTTGTGATGACGACGACGAATTTGAAGGGATTATTGACGAAAATCGTTTATCACCGAATGTTAAAGATAAGACAGAAGCACGAACCGAGCCTTTCGAGCTTTCTCGCGAAGTCATACTTGATGCTGCCGAGAATATACTCCAAGATTCAACAAATGTTGCTGATAAAATCCTAAATATATATGTTAGGAATACGATAGGGTATGAAGAGAAGTGGAAGCTAGAGCAAGAATGGTATGAGATGAGAATACAGCAGGCTTTAGATGAATGGCGTACTTGGCAGTTCCGTAGTTTTCACAGAGAAAGCCCTCTTTTCTACAAATGCTATATTTGTACGCGGTCCTGGTGGCATTTGACAGATTTCCGCAACCATTTGTCTTCGAAACATACCAATGATTTATTGGTTATAATAGCTTTGGAAAAATATGAAATGCATGAAGCTAATTTGATAGCGTATCACCAAAGGCTTGTTGTTATAAAAGATATATATACAGAAGGACTTTGTTACCGATGCGGTAAAGATTATGGTGCTCACGAGATAGAATCTAGATTCCAGGAGAAATATTACAGAAATGCAGGTTgcacaaaacagttttttagCTGTATGGGTTTAAGAGACCATTTTTCTAGCTGCCCTGTTTGTAAAAATGAGGATAAGCCGTTCAAATGTGATATATGTAAGTCAAGATTTAATACAAAGGAAGAATTAAACAGTCATTTAGTGCTGTCTCATTCCGTTCGGTCTGATATACCGATAATGTCTCACTACAAGACCTGCAAGCGCTGCTCGCAGAGGTATTCTTgtcaatatttacataaatgcgGACAAAAGGGACCTTATAGCGAGTGTCCACACTGTCTACAGAGCTTCTTAAATGTCAAGTCTTTGGAAATTCATATGGAACGTTCAAGTAAACCTTACAAATGTGAAGTTTGCCGAGCAGTTATGGCATATAACTGTAAAAAGTATGAACATATGTTGAAACATACAGATAAGTATATGATAGTACAGAAATGTGTGACGTGTGAGGGTTTGAATGTGTTTTTGAATAACAAAGACGCAGTGGCACATTGGATGTTAAACCATGAGTTCAAAGAAACGAAACGTCAGAGCTATTTTCCTAAAATTTTAGTACCGTCGTCATGTATATATGAAACTTTAGCAGAATCAGAAGGGGATGAAGAAGAATCCGTATTGGAAGATCAAGTATCGGTGCTGGGAGAACAAGAATCGGAACTAAAGGCAGCAGAATTGGTATCGGAAGAACAAGAATCAGTACGGGAAGAAAAAGAGTCGGTACTGGAAGAACAAGAATCAGTACGAGAAGAAAAAGAATCGGTACTGGAAGAACAAGAATCAGTATGGGAAGAAAAAGAATCGGAACTGGAAGAACAAGAATTAGTACTGGAAGGAACTGAATCCATACCTGAAGAAGAAGAACCCGTACCAGAAGAAGAATCAGTATTAAAAAGTGAAAGAGAATCTGTTTCAGTATGTGAACAGAAATTGTTGCAAGCAGAGCTAGAATCAACAAGAGATTTTTTATTGGGAAACGTTGTTGTTAAAGAAGAGCCAGAAGACAGCCCAAGACTTACAATCAAAGAAGAACCATTAGAAGAATTTGAAAACCAAATGAATGAAGAAGAGAATCGTACCGAGAATTTTGAACACGAAATAAGTGTCAAAGAAGAATTCATAGAAGAAGAATAcgtagaagaagaagaagaagaatacgtagtagaagaagaagaagaagaatacgaAGAAGATATTATCAAACTGCACTTCAATATAGAAGACTTATTAGTGAAACAAGAATCAATTCAAGAAGATGCCGATTATACTGTAGAACAGACAGAAGAGAACCAAGAATCAGAAAATGATGACACAAACGAATTTCCACAAGAATTGAATGAAGATTCCATGCTAAGACCACAAGTTATTATAGAAGGGAATAataggaaaaacaaaaaactatacagatgtagtaaatgtgGATTTACAGCAAGgcacaaacaatataaaaatcaCATAGACTATGACTGCGGCAAAACCCCAATCAAGCATAAAACCTACACATgcacaaaatgtaaaaatacatttgtgtctatgaaaaaatatttgacacaTTTCAAAGAGCATGGTTACAAAAACCTATCCTGTCCAGATTGCCTGAAAGAATTTGACACATACACACATCTGGGCCAGCACCTACAACAACACatcaaacaaaattttgtacGAGTCCGAATGATTACACACGCAGGCAAGGCTATGATAAAACCTGATTTTCAATGCAAAAAATGCGGACAGACGACAgcttttcaaaacttttttgaGCATTGGGAGCTGCATATAAATGCTCAGCCTACGCATCCTATTAAAGTGACTTCAAGGTCTATGCACAAGCACAGTGAATTGCATGAAACTATTATAAAGGAGTGCCTTGCCCGCTTAACAAAACAGCCAAAGGAATGCAACCACTGTCACCGCTGGTTCAAACGGGTTAACGAATGCAAGCGCCACATTATAGAGCATCTGTTAAATGACGCATACAGCCAGAAACACATCTACAAGGAGCTCAGATGCCAGGTCTGTGAACAAGGGTTTGCTGTACcagaaaaatataaacaacataTGCGGGACCATGCGTCCCTACCTGTATACAAGTGTGAACTGTGTGATCGCACCTTTAGTGATTCAAGCAACTTTACAAAGCATAAAAAAGTGCACAATTTGAAAGTGATTATCTGTGATTTGTGCGGTAAAAAGTTTCAGTCGAAAGCGTCTTTGGAGAAGCATATTGAGAAACACATGGATTCACAGCCGATTACCTGCAAAATTTGCAACAAACTCTTCTACTTCGATACGTCTTATCGACGCCATGTAAGATACTTCCACGAGAAAACCGTCATCGGCTACCGCTGCGTTATGTGCGGCGAACGCTTCGAAAGTCTAAAATTCAAATGGAACCATATGTGGGAAGTACATAAGGAAAGGAAGCAGAAAGCGGACTGTCCTATATGCCACGAGTCCTTCAGGAAGTATTCCGATGTCCGTCTACATGCAAGAGTACACCATATGAAGGAAGTTTCAGTGTTGACTGTCAAAAAACAGGCAACAAAGTCCAATATAGGTATTGATAAGTACATAGGAGATCCTGCGAAGATCAAAACTGGGAGGATGGAAACTTTGGTGGTGTATGATTCAGATTCATGA
- Protein Sequence
- MADTSRKRSRKTKLVPRECAVEEDDLELQVPEPKVPKTINQPTNREPTNNVIEKPPEPTFSKPEEVDTSVLKKINAAAREDNEPQTKISPRKFEINIEIESCDDDDEFEGIIDENRLSPNVKDKTEARTEPFELSREVILDAAENILQDSTNVADKILNIYVRNTIGYEEKWKLEQEWYEMRIQQALDEWRTWQFRSFHRESPLFYKCYICTRSWWHLTDFRNHLSSKHTNDLLVIIALEKYEMHEANLIAYHQRLVVIKDIYTEGLCYRCGKDYGAHEIESRFQEKYYRNAGCTKQFFSCMGLRDHFSSCPVCKNEDKPFKCDICKSRFNTKEELNSHLVLSHSVRSDIPIMSHYKTCKRCSQRYSCQYLHKCGQKGPYSECPHCLQSFLNVKSLEIHMERSSKPYKCEVCRAVMAYNCKKYEHMLKHTDKYMIVQKCVTCEGLNVFLNNKDAVAHWMLNHEFKETKRQSYFPKILVPSSCIYETLAESEGDEEESVLEDQVSVLGEQESELKAAELVSEEQESVREEKESVLEEQESVREEKESVLEEQESVWEEKESELEEQELVLEGTESIPEEEEPVPEEESVLKSERESVSVCEQKLLQAELESTRDFLLGNVVVKEEPEDSPRLTIKEEPLEEFENQMNEEENRTENFEHEISVKEEFIEEEYVEEEEEEYVVEEEEEEYEEDIIKLHFNIEDLLVKQESIQEDADYTVEQTEENQESENDDTNEFPQELNEDSMLRPQVIIEGNNRKNKKLYRCSKCGFTARHKQYKNHIDYDCGKTPIKHKTYTCTKCKNTFVSMKKYLTHFKEHGYKNLSCPDCLKEFDTYTHLGQHLQQHIKQNFVRVRMITHAGKAMIKPDFQCKKCGQTTAFQNFFEHWELHINAQPTHPIKVTSRSMHKHSELHETIIKECLARLTKQPKECNHCHRWFKRVNECKRHIIEHLLNDAYSQKHIYKELRCQVCEQGFAVPEKYKQHMRDHASLPVYKCELCDRTFSDSSNFTKHKKVHNLKVIICDLCGKKFQSKASLEKHIEKHMDSQPITCKICNKLFYFDTSYRRHVRYFHEKTVIGYRCVMCGERFESLKFKWNHMWEVHKERKQKADCPICHESFRKYSDVRLHARVHHMKEVSVLTVKKQATKSNIGIDKYIGDPAKIKTGRMETLVVYDSDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01093596;
- 90% Identity
- -
- 80% Identity
- -