Eoch010612.1
Basic Information
- Insect
- Eremobia ochroleuca
- Gene Symbol
- -
- Assembly
- GCA_949629135.1
- Location
- OX451390.1:17013979-17025662[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.023 2.2 9.9 2.3 1 21 200 220 200 221 0.96 2 10 0.91 89 4.9 0.2 6 23 243 260 241 260 0.94 3 10 0.15 15 7.3 3.8 2 23 327 348 327 348 0.96 4 10 0.0039 0.39 12.3 3.7 1 23 353 375 353 375 0.96 5 10 3.4e-06 0.00034 21.9 0.3 3 23 383 404 381 404 0.95 6 10 0.00024 0.024 16.1 3.0 2 21 411 430 410 431 0.95 7 10 4.8e-05 0.0047 18.3 0.8 2 23 440 461 439 461 0.96 8 10 2.6e-05 0.0025 19.2 6.0 1 23 467 489 467 489 0.99 9 10 1.9e-05 0.0018 19.6 1.0 2 23 495 516 495 516 0.95 10 10 0.028 2.8 9.6 1.0 1 23 522 547 522 547 0.93
Sequence Information
- Coding Sequence
- ATGTCTTTAATTAGTGAAAAGGATAGCACAATTAAAATACGGACGTGTCGAATATGTCTTGATGCAAATAGAGTTGATATGGTGTTAATAGAAGAGCAGAATGGATGGTTGAGACGTTTCGAGTTTTGTTTTGGATTTACTctaACTACTCAAGACCAACCACGTTTGATGTGCAAAATATGTGCCGAAAAAGTCCAAGGTTATGTTGAGTTCAAGGAGAAATGCCTTCAATCCCATAGTCTTTGGAAATCCGTGATTTCTGATGTGaAATGTTACGTAGTTAAACATCAAAATGGAGAAAATACCAATGAAAATGCCAGTGATCCTGctacaaataaaacacaaattaaaGATGAAACATTTGATCCATATTTTGACAATGATACTCATTATTCTAACCTTGATGACAGTGAAATAGATAACTTGTCGCCTACTGAAATTAAAACTGAGTTTCACGAAGAAGGTACCAAAACAAGGGATGATGAAAACAACATGATGAAAAAGAAGGATTGTATTAGAATAAAAGCTGATTCAAAACTGATTGATTGCAAAAATTTTAACAGTCATGGCAGTGTAAAAAGtaaggaaaatgaaatttacACTTGCACAAACTGTAAAGTTAAGTatgCAAGAAAAGTATGTTACCTCAAACACATAAAGGTATGTCCGACTAAAATATCAAGGAAGCGGAATTTCAGTCAAGATTATGCTTATGACTTGGGGCTCTGTAATCTCAGTTTCGCCACTACTAAAGAGGTTTGCATACATTTGAACGATCACTGGTCAAATAATGAGTTAGCGTGCAAATTGTGTGGTTTCGTAGGTATTGACCTAGCTGCTACTGTTGTACATAGgtattCGCACTTTCCGCGCAAAGATATATTGCGTTTTTTATGCCACATTTGCGAAAAGAATCAACAATCATTGATGGCATTGCATTTTCACTATCGACGAGAACATTTGAAGAAGCCTGGAGGTTATTGCTCGAGGTGCCATAAGGAATACAACAAGCTGCGTCTCTGGAAGAAACATGAGTTGACACACTGTGCTCGTAAGCATGTGTGTGATATTTGTGGAAAAGGGTTTCATTTTAAACACTCTATTAGGGAACACATTATAAATCATATGCAGCTAAAGAAGAGCATCTGTGATATTTGCGGAAAAGCTTTTACTCGCCAAAGTTACATGAAGGTACACAAAGAAACAGTTCACTGTGAATCGGGGCCAATAAAGTGTTTTCATTGCAACCGAACATTTAAGAGTGAGTTCTCTCTAAACAAGCATCAGAAAGATACGATTAACAGGGAGAAAACCTTAGAATGTGAGGTGTGCCATAAGACCTTTATAACACCAAATAGATTGAAGCTGCATATGGTGATGCATAGTCATGAACGGCCTTATAGCTGTAATATTTGTAGCTGCAGtTACAAATATAAATCTCAGCTGACGAATCACCAGCGGAAGCATTTTGGGTTTTTTCCACAATGTTCGATCTGTACGAAAACGTTCTCGGACTCGATGTCGTTAAAAAGGCATTCTGCTGTCCATACGGGTGTTCGGCAGTACAATTGTAGCGTCACAAACTGCACGAGGACTTTCTATTCGAAGAAACTAATGTTGGCGCACTTGGAACTACGTCATAAAGATGAAATATCGGAGAAAAGTGAGATATTATGCAAGAGAAAATAG
- Protein Sequence
- MSLISEKDSTIKIRTCRICLDANRVDMVLIEEQNGWLRRFEFCFGFTLTTQDQPRLMCKICAEKVQGYVEFKEKCLQSHSLWKSVISDVKCYVVKHQNGENTNENASDPATNKTQIKDETFDPYFDNDTHYSNLDDSEIDNLSPTEIKTEFHEEGTKTRDDENNMMKKKDCIRIKADSKLIDCKNFNSHGSVKSKENEIYTCTNCKVKYARKVCYLKHIKVCPTKISRKRNFSQDYAYDLGLCNLSFATTKEVCIHLNDHWSNNELACKLCGFVGIDLAATVVHRYSHFPRKDILRFLCHICEKNQQSLMALHFHYRREHLKKPGGYCSRCHKEYNKLRLWKKHELTHCARKHVCDICGKGFHFKHSIREHIINHMQLKKSICDICGKAFTRQSYMKVHKETVHCESGPIKCFHCNRTFKSEFSLNKHQKDTINREKTLECEVCHKTFITPNRLKLHMVMHSHERPYSCNICSCSYKYKSQLTNHQRKHFGFFPQCSICTKTFSDSMSLKRHSAVHTGVRQYNCSVTNCTRTFYSKKLMLAHLELRHKDEISEKSEILCKRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -