Eoch033055.1
Basic Information
- Insect
- Eremobia ochroleuca
- Gene Symbol
- -
- Assembly
- GCA_949629135.1
- Location
- OX451413.1:6395180-6396391[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.8e-05 0.0067 17.9 5.0 1 23 69 92 69 92 0.98 2 10 0.47 46 5.8 0.3 2 23 118 139 117 139 0.96 3 10 6.4 6.3e+02 2.2 0.2 2 23 161 183 160 183 0.85 4 10 0.00067 0.066 14.7 1.2 1 23 188 211 188 211 0.93 5 10 0.003 0.3 12.7 3.5 1 23 216 239 216 239 0.97 6 10 0.21 21 6.8 0.2 2 23 245 267 245 267 0.93 7 10 0.00033 0.032 15.7 1.5 1 23 274 297 274 297 0.98 8 10 0.00082 0.081 14.4 2.4 2 23 304 325 303 325 0.96 9 10 2.6e-06 0.00025 22.3 0.7 1 23 331 353 331 353 0.98 10 10 8.5e-06 0.00084 20.7 1.5 2 23 360 381 359 381 0.96
Sequence Information
- Coding Sequence
- ATGGAGATCAGACCAATACGGGAATATACAATAGAATATTTCTCGTTTTCAGTCGCGAAGGAAAATGAGAACAGCACGCGCTGCCTGGATGAAGACACCCAAAGGACTTGCAAACTCTTTGTTGGCATTCTAGAAACGTCTACGGCGATACCGTTTAGAATTAACAAGACCGAATGCAAGCCGTTTCGAATTAACAACACTGAATACAAGTGCTTCTACTGCCCAAGGAACTTTTGCTTGCCATCACAATTGAGGAAACACACGCAAAGAAGCCACGTGAACCAAGACCTAAAAGAAATTGTCgagaaaaatattacaatgtcCATTTTAAAATTGGATATCTCAGAGCTGCGATGCAAAGTTTGTTACGACAACTTTGAGGATATTGAGACTTTTGTCGTACACCTTCAAAAACACAAATTGAAAGTAGATAACGATTTAACTCCCATTCTATGCTTCAAATTGTCTGATGACGTAATCAGTTGCTACGTTTGCAAAGATGAGTTTTTGTATCTCTCCTCTCTTCTCAAACACACTCAAGGGGCCCATTCGGACGGAAAATTCCCTTGTGAGACATGTAACATTTCCTTTTGCACTGAAAACAGTCTTATTACGCACACAGGAAAAGAACACGAGACTAGCCAATTCGACTGTAACGTATGCGGCAAAAAACTCTGCTCGAATCTCAGCAAAAGGCGTCACATAAGACGAATGCATGAAATAGAAAACAGAAAATGTCCCATTTGCTTCAAAATACTCGGTAGTGCGTATCAAAAAAACACTCATTTAGTCAAAGCTCATGATGTTTGGACATCGCAATATAAATGTGATATGTGCTCAAGAATGTTTCTAAAGAAAGCTATGTTATCTAAGCATATTCGACGAGAACATTTGAAAGAGAAAAATGTCACTTGTGAAGTGTGTGGCCAAAGATTCTTTGACCACCATTTGCTTGAGTCGCATCAAGTTAAACACGAGAAGAGCAGGCCTTTTGAATGCGTTTACTGTAGCAAAACATTTACAAGAAAGAAGGCTCTAGTCGTTCATGAGAGAATACATACAGATGATAGACGGTGTGTGTGTATGGAGTGTGGAAAAGCGTTCGTGCAGTATGCTAGTTTGCACTGGCATATGAGATTGCATCGCAAACAACAGGCTAAGGAGGAGACTGTGTCTACCAAAGAAACGTCGGCCGTTGGAGCAAACGAGTAG
- Protein Sequence
- MEIRPIREYTIEYFSFSVAKENENSTRCLDEDTQRTCKLFVGILETSTAIPFRINKTECKPFRINNTEYKCFYCPRNFCLPSQLRKHTQRSHVNQDLKEIVEKNITMSILKLDISELRCKVCYDNFEDIETFVVHLQKHKLKVDNDLTPILCFKLSDDVISCYVCKDEFLYLSSLLKHTQGAHSDGKFPCETCNISFCTENSLITHTGKEHETSQFDCNVCGKKLCSNLSKRRHIRRMHEIENRKCPICFKILGSAYQKNTHLVKAHDVWTSQYKCDMCSRMFLKKAMLSKHIRREHLKEKNVTCEVCGQRFFDHHLLESHQVKHEKSRPFECVYCSKTFTRKKALVVHERIHTDDRRCVCMECGKAFVQYASLHWHMRLHRKQQAKEETVSTKETSAVGANE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01094306;
- 90% Identity
- -
- 80% Identity
- -