Eoch028871.1
Basic Information
- Insect
- Eremobia ochroleuca
- Gene Symbol
- -
- Assembly
- GCA_949629135.1
- Location
- OX451407.1:12573965-12579899[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.049 4.8 8.8 0.1 5 23 531 549 530 549 0.96 2 12 0.018 1.8 10.2 0.2 3 23 557 577 555 577 0.94 3 12 1.5 1.5e+02 4.2 0.3 2 23 585 606 584 606 0.91 4 12 4.1e-07 4e-05 24.8 1.0 2 23 612 633 612 633 0.98 5 12 0.0041 0.4 12.2 4.3 1 23 639 661 639 661 0.98 6 12 0.00066 0.065 14.7 0.3 1 20 665 684 665 686 0.94 7 12 9.2e-05 0.009 17.4 0.2 1 23 719 742 719 742 0.96 8 12 0.0013 0.12 13.9 0.1 3 23 751 771 750 771 0.99 9 12 4.1e-05 0.004 18.6 0.4 1 23 782 804 782 804 0.98 10 12 0.00011 0.011 17.2 4.5 1 23 810 832 810 832 0.98 11 12 0.004 0.39 12.3 0.3 3 23 840 860 838 860 0.98 12 12 8.7e-06 0.00086 20.7 0.7 1 23 866 889 866 889 0.96
Sequence Information
- Coding Sequence
- atgccacccgatgaagacaatgaacaaggagtcctgcacattaccgagactccgcgagacagctggctacctgaccctgcccgcttctccaagtacgagacgctagtaagagcagtggcaagagccttggcgttcatcgacatatgtcgacgcgCCGCTACAAGACTGGAACACAGACATATCCAGCGCGCTGAGAAAGAACTCCTGCAACGAACGCAACAGGAAAGTTTCGGCGAAGAAATGAGACGGATGCAGTCAGCCCGTCCTATCCCAAAGACGAGCAGACTGTACAAACTCGATCCAGTATTGGAAGACGGCCTCCTGCGGGTACGAGGCCGCATTGAAGCATCAGCGGCAACACAAGAAGCAAAACGGCCAATCATACTAGATGGCCGCCACCGAGTGACGAGGCTTCTGGTACAACGGGAACACTGCGCTGCGGGTCACGCCAACCGAGAGCGCGTGACTAACGACCTGCGGCAACGGTACTGGGTCATACATCTGCGACCCACCGTGCGCGCGATCGAGAGAAGCTGTGTCTTCTGCAAGAAGCAGAAGGGGACACCACAAACGCCGGCCACGGGAGACTTACCACACGCCCGCCTAGACCCCTTCCACCGCCCGTTCACTAACTGCGGGGTGGACTACTTCGGGCCCATGACAGTCAAGGTCAAGGAAGATGATGGTCTCCCGCAGATGCTGTGCACAGATTGTTATGCTATCATGAACTCCGCGTACCAGTTCCGAAAACAGTGCATCAAAATGGACAATGAACTACGTCTACAGCTCAAAACTGTATTAGATATATCTAAAGGTGATAATCTCTCTAAATATGATGGTGATGACGATATTGGGAACGATCCCATGAAGCAACTTGAGGCAATCATCAAACAAGAGCCAACTGATAGCGATGATGATTACTATTACGTCTTGGTTATTGATGACCCCAAAGATAAGGATAAGGAAGAAACAACAGAAGTGACGAACATTAAACAAGAATATGAAGACATTGTCGCAAATGCGGAGACTACAACTACTTACACAAAGGAACCAACTCAAAGCTCCCAGAGTCAGTTTGAAGACTCAATTGAATCGTTCCTCATGTCCAACACCAAAGTCTCGGCTAACGTACCAGCTACTATCCTAGAAAATGAGGAAGAGAGCCAAGAAACTGACGATTTAGACGGAGCCATGAACATAGATGAAACCCAGGATAATATGTCCCATGAACAAAATTTTGCTGAAATGGAAGAGTCCCAAGATGATGAAACCATTGAAACTATTTCTACTAATGTTATTAATGAGCTGCCTAGTTCTAAAAACTTCATCAAAATATTGACTACAACTGACTCTGATGGCACTATCTTGTTGAAAGGTAACAACAGGATCCAGTACTTGACTGATTCTCAACTACTCGtaaatgaagatgaagatggaGACGCATTGTCCCAAGAAGTGATATTCTGTGAAGGTGATGACTCTTCCCAGTTCCAAATACTGAAATATGATGGTTCAGAATTGGTTATAGAATATGCAGATGATAGCCAAATAGCTACGGTACTACAACAAGAAGATGGGACATTCTTATGTGATTGTGGAGAGCAGTTCGAAGACTTGGCTGATTATGAGAAGCACCAGTACAAACACAATCCTGCTGGGGAACATTTATGTAACTTGTGTGGTAAAGGCTTTGAGTCTGCAGAAATTCTTACTGGACACATGCTACTTCATAGCAATACCGGACTCTTAATCACTTGTCCGTTCTGCAACCAGCTTATCAGACGCAATGCTTTGACGCAACATATCAAATACGGTCACAACAACATCAAACCTCGctgcaatatttgttttaagaCTTTTGCTAATCCTAACAACTTGAAACGTCACATGATGATTCACAGTGGCATCAGAGAGTTTGAATGTGACATCTGTTTCAAGAGATTCCACCAAAAAATCACAATGCAAACACACAGGTTAACACATATGAACCCGTTTTCATGCAACCAGTGTGAGCAATCATTTGAGAATAAGGCTGCATTGACCAATCACAAAGAATCTGACGACTGCTCAAAATCTAAAGTGATTAAGGTCAAAGAAGAATTAATGAAGACTGTCAAGCAAGAAGTAACTACAAATCTTGGTAAACTTCTTGGTTATGCTTGCTCACTATGCAAGAAGATGTTTTCAGTGGAGTCCGCATTAGAGCAACATATTGAAAGCACACACATTGTTGATCCAACAGAATTGTTATGTTCGGAGTGCGGTGAAGTACTGCCATCTAAGAAAGACATGCAAACTCACATACTGACtcataaaaacatgaaagtgAAGAACGTAAAAAGGTTTGAATGCAGTATTTGTGGCAAGGGGTGTTCGAGCCAGGCTATGCTTTTGATGCATGAGCGTGTACATACAAATGAGAGGCCTTTCCCGTGCCAACTATGTTCTTTACGATTTAAAACGAAAACACATTTACGGACGCATCAGCTTACTCACACACGGGAAAAGAAGTTTGGATGCTcagtttgtatgaagttttttgCCCTCAAAGGGAATTTGGTTGTTCATCTTCGAACACATACAGGAGAGCGCCCCTATGTATGCTCGATATGCGGAGAAGCTTTCATAGACTCTAAATATTTGAAGAAACACAAACTAAAGAAGCATTCTATAGATAATGTGCCGTGGAATCAGTACTGA
- Protein Sequence
- MPPDEDNEQGVLHITETPRDSWLPDPARFSKYETLVRAVARALAFIDICRRAATRLEHRHIQRAEKELLQRTQQESFGEEMRRMQSARPIPKTSRLYKLDPVLEDGLLRVRGRIEASAATQEAKRPIILDGRHRVTRLLVQREHCAAGHANRERVTNDLRQRYWVIHLRPTVRAIERSCVFCKKQKGTPQTPATGDLPHARLDPFHRPFTNCGVDYFGPMTVKVKEDDGLPQMLCTDCYAIMNSAYQFRKQCIKMDNELRLQLKTVLDISKGDNLSKYDGDDDIGNDPMKQLEAIIKQEPTDSDDDYYYVLVIDDPKDKDKEETTEVTNIKQEYEDIVANAETTTTYTKEPTQSSQSQFEDSIESFLMSNTKVSANVPATILENEEESQETDDLDGAMNIDETQDNMSHEQNFAEMEESQDDETIETISTNVINELPSSKNFIKILTTTDSDGTILLKGNNRIQYLTDSQLLVNEDEDGDALSQEVIFCEGDDSSQFQILKYDGSELVIEYADDSQIATVLQQEDGTFLCDCGEQFEDLADYEKHQYKHNPAGEHLCNLCGKGFESAEILTGHMLLHSNTGLLITCPFCNQLIRRNALTQHIKYGHNNIKPRCNICFKTFANPNNLKRHMMIHSGIREFECDICFKRFHQKITMQTHRLTHMNPFSCNQCEQSFENKAALTNHKESDDCSKSKVIKVKEELMKTVKQEVTTNLGKLLGYACSLCKKMFSVESALEQHIESTHIVDPTELLCSECGEVLPSKKDMQTHILTHKNMKVKNVKRFECSICGKGCSSQAMLLMHERVHTNERPFPCQLCSLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCSICGEAFIDSKYLKKHKLKKHSIDNVPWNQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -