Eoch010549.1
Basic Information
- Insect
- Eremobia ochroleuca
- Gene Symbol
- RTase
- Assembly
- GCA_949629135.1
- Location
- OX451390.1:15513981-15533628[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0082 0.81 11.3 5.0 1 23 918 940 918 940 0.95 2 11 7e-05 0.0069 17.8 0.5 2 23 947 968 946 968 0.97 3 11 1e-06 0.0001 23.6 0.5 1 23 974 996 974 996 0.98 4 11 7.8e-05 0.0077 17.7 1.0 1 23 1005 1027 1005 1027 0.96 5 11 0.00034 0.033 15.7 2.1 2 23 1034 1055 1033 1055 0.96 6 11 0.0014 0.14 13.7 7.5 1 23 1061 1083 1061 1083 0.98 7 11 4.3e-09 4.2e-07 31.1 0.6 1 23 1089 1111 1089 1111 0.99 8 11 3.3e-05 0.0032 18.8 1.3 1 23 1117 1139 1117 1139 0.98 9 11 8.7e-07 8.5e-05 23.8 1.3 1 23 1145 1166 1145 1166 0.98 10 11 0.00023 0.022 16.2 1.3 1 23 1172 1194 1172 1194 0.98 11 11 0.012 1.2 10.8 2.5 1 23 1200 1222 1200 1222 0.97
Sequence Information
- Coding Sequence
- atgtcttttgatgatgattctttttacTCTGCCATTGATTCCTCTAGCTCATCCGCTAATGTTAGTTTCAGTTCTTTGACTGACACACTTGGTGACTTTGTGCGTAAGAGCTTCAGCCAACAGAAAGGTCACTTGTTAAATGTCTGCCATATTAATGCGCAAAGTGTCCCAAGTCACTACAGTGATCTGTTGGACACCTTTACTGATGTCAATGTCCATGCCGTTCTGATTTCTGAGAGCTGGCTCAAACCTCATCTTCTCTCCACTACCTACTCTCTTCCGGGTTTCACTCTTATCCGCAATGATAGAATTGGAAAGGGAGGGGGTGGGGTAGCTATCTATCTTCGTAGCGATTTTCCGTATAAAATCATTGCCTCATCTCCCTCACAATACCATGCTTCCGCGGAGTACCTCTTTTTGGAGGTCTACCTCAAGGGCGTCAAGACCCTTCTTGGTGTTGTCTACTGTCCACCCGCCGTTGACTATTTTTCCAACCTTGAATTGGTGCTTGAATCCGTAGGTTCAGAGTATGCACATTGCGTCATCATGGGCGATTTCAACACCGACCTTGCCCATCATACTCCCCGATCCCGTAAACTCCTTCACATCTTTGAGTCCGTTAGTCTTCAGATACTTTCACTGCAACCTACCCATTTTAATATCTCAGGCGATGACACTTGGCTCGATCTAATCCTCACATCCACACCCTCCCTTGTTTCCTCTCATGGTCAGTATCCTGCCCCTGGATTTTCCCATCATGACCTCATTTTCCTCTCATATGTCCTAAAACCACCTAAACCTATCCCAAAAGTTCTGCACATGCGGTGTTTTGCGCGCATGGACGTGGAGAAGATTCGTCAGGATGCTTCAGACCTCAGTTGGGAACACCTGGCTGCGGCGACAGCTGTAGACGAAAAACTGCGCATTTTCGATCAGACGATCCTCGCTCTCTACGACAAACACGCTCCTGTTAAGCAGATTAAACTTCGACGTCCTCCTGCTCCTTGGATGACAACAGGAGTGCGAATGGCGATGAGACGCAGGGATCGGGCCTTTCGTAAATTTAAAAAGGATCGTAGTGAAGAAAATCGAAACTTTTTCAAAGCTGCTAGAAATCGGTGTAATCAGATGATACGCAACGCCAAACGCCGCCATATTCTCGAGAATATATCTTCTTCTTCACCTGCCGATATCTGGAAGTTCCTTGGTACTCTCGGTATCGGCAGACCACGGCATGTGGATTTCCCTAATACGATTGGCCTTGATGATATCAACCGTCACTTCACAACCACTCGTCATTTGGATTCCCAAATGTTGTCCCAGACGGTCGATTTCATTTCTGGCCTAGCGAGTCCCATCATAGAACCATTTCACTTTTCTCCGGTGACCTCGGacgaaattaaaaagattatccTGTCCATAAAATCCAAGGCTGTGGGCTATGACGGCATCAGTCGTAGTATGGTCGTTTGGATCCTTGATAGCCTTCTCCCTCCGATTACCCACATTATTAACTTTTCCCTTGACTCCGGACAATTTCCATCCCTATGGCGTATGGCCTATGTCCGCCCACTTCCTAAAATTTCAAATCCCTCCCTACCAAGTCACTTCCGACCCATTTCCATTCTCCCGTTCCTGTCTAAAGTGCTTGAGGCCTGCGTACACAAGCAGTTTACGGGGTTTGTTCATCGGAACAACCTCGTTAGCTCTTTTCAGTCCGGGTTCAGGCCTGGGCACAGTACTGCCACCGCTCTCCTTAAAGTGACTGGTGACATTAGAGAAGCGATGGAGGATACCAAAGTTACCGTTTTGGTATTAATCGATTTCTCTAATGCCTTTAACGCCGTCAGCCACGATATTCTCCTTTCTATCCTTTCTCACCTTATGGTTTCGTCCGAGGCTCTGGAATGGTTCActtcttatcttcggggacgtcAGCAGTCCGTCCGCCTTGATGATAGCTCGTCGAGTTGGCGTGACCTGGATGCTGGTGTGCCACAAGGCGGTATTCTTTCTCCATTGTTATTCTCCATCTTCATCAATTTTATAACTCAATGTCTTCGGTGTTCGTATCATCTGTATGCTGATGATCTTCAGTTGTATTCAGCTGAGCGGGTAGAAGGTTTATCGGACGCTATAGCAGATGTAAACCGAGACTTAGATGCTATCAAGAAGtggtctgatagtttcggggtgTCAGTAAACCCCTCAAAGTGTCAGGCCATTGTAATTGGAAGCTCACGCATGATGGGTAGAGTGACGCTTAGCTCTCTTCCTCCCCTTATTTTCAATGAAGACACCACACAGATAGATGAAGAAGAGAAAGGAACCAGAGAAGACtacattgaaattgaaattccGTACAACTTGTACCAACACCTTAGCTCAGACCACTGCAATGTTCAAAACATGTGTCGAATATGTCTCGCTACAGATAACGCGGTTTTATATCCGTTAGTTGCTACCAAAGAAAACAATGTTTTAGCTCATATGTTTATGGCATTTACTTCTGTTCAACTGCTTCCAGGAGATGGCTTGCCATCAAGTATATGTGAGCCGTGTCAGGCTCAGGTAGTGCAGTGCTATGAGTTCAAGACCAAGTGCGAGAAGTCAGACTGCATGCTCAAGTCAATACTGAAAGGAGAATTCATTACCAAAGAAGAACTACCTGAATATAGCATGTTGaaattccAAAATGTGAAATCATTCCACGCCCATGCGAAGAGCAAGCATCCAAGCATTAAACATCTGCATTTTTGTAACCACTGCACAGAGTCATTTAATTCTGAACACGATCTCAAAGTACATGCGTCGATACACACTAAAGGAAACAGTTGGAAGTGCAACCAATGTCCTAAGGAGTTTACTGCGCGCGCGATGCTCCGGCGCCACATCTCCCGGCACATGGAGTCGAAGCGCTTCTCTTGCGAGGTGTGCGACAAGACGTTCACCGAACAGTATGCGTTGCGACGACACGCGCGCGTTCACACCGGCGAGATTCTTGAGAAGAAACATGCCTGCACTATGTGTGATAAGAGGTACAGTGAGAGCGGTCTTCTAACAGCGCACATGTCCCGCCACATCGGGTTGCGTCCTTGCGAGTGCAGTACATGCGGCAAACGGTTCCCATCGAACCGCCTGCTGTCGTCACACCGGCTCGTGCACTCGGATCGCAAGCCGTACGCCTGCCAGTACTGCGATAAACGTTTCCGTCACGAGTCGACGCGCAACACCCACCACCGGACGCACACTGGAGAGAAACCTTACGTGTGTTCCGTGTGCGGCAAGAGCTTCATACAGAACTCCAACCTCACGCTGCATATGAGGACACATACTGGCGAGCGACCCTACTCATGTTCGATATGTAATCGCAAGTTCACTTCAGGGTCTACACTCAAAAGCCACGAACGGATACATTCTGGAGAACGACCTTTCAGTTGTGAAATTTGTGGGAAAAGCTTTACGCGCAAGAACTTGAGCGCGCACATGCGCAAGCACACGGGCGAGCGTCCGTACGAGTGCGGCGTGTGCTCCAAGAAGTTTGCCAACGCTACGCGTCTGCGGGACCATCATCGCGTACATACGGGTGAAAAACCATTCGACTGCTCAATGTGCACGTTAAAATTCGCTACGAAATCTCAACAGTTAAAACACTCCAAAACGCACCTAGCAAAAAAGAAGAGAGCAGTCGTGCATGCCTCAGTTAAAGACCGAAACCGAGAGAACCGTGGACTGGTCATATTACAACAAGTTGAGCCGGTTCCGATCATTACTGATAGAATTATGTTCAATAAGGAGCACGGAGAACTTATAACAGTAAATGAAAATTTAACCATTGACGAGTCGCCCGAAGATCAAGCCAAAGAACTAACACTAAACATCATACAAAAAGTCCCATTAGAAGTGACAGGAGAGTTAGTACTACAGGACGATAGTAATATGAAAGGAGAGCTTTTAGTAGTTGATAATAGCCAAAGTAACTTCCAAGGTGATAGTATATGCTTGAATACTAGCAACGTGAATATCATCGATGACGTCAACTACGAGGGTGATATGAACTTGGTGACGGTGAACGAGGGCGGCGTCAGTATTTCGACCGCTAACCTCGAAGGTACCACAGTCAAACTGTACCAGTTAGACCAAAGTTTAGTGCAAATACACAGCTCAGGTGGACAAGTCACTATTAGTAAGATAACTAGCAAAATGACAGCTAACTTTTAA
- Protein Sequence
- MSFDDDSFYSAIDSSSSSANVSFSSLTDTLGDFVRKSFSQQKGHLLNVCHINAQSVPSHYSDLLDTFTDVNVHAVLISESWLKPHLLSTTYSLPGFTLIRNDRIGKGGGGVAIYLRSDFPYKIIASSPSQYHASAEYLFLEVYLKGVKTLLGVVYCPPAVDYFSNLELVLESVGSEYAHCVIMGDFNTDLAHHTPRSRKLLHIFESVSLQILSLQPTHFNISGDDTWLDLILTSTPSLVSSHGQYPAPGFSHHDLIFLSYVLKPPKPIPKVLHMRCFARMDVEKIRQDASDLSWEHLAAATAVDEKLRIFDQTILALYDKHAPVKQIKLRRPPAPWMTTGVRMAMRRRDRAFRKFKKDRSEENRNFFKAARNRCNQMIRNAKRRHILENISSSSPADIWKFLGTLGIGRPRHVDFPNTIGLDDINRHFTTTRHLDSQMLSQTVDFISGLASPIIEPFHFSPVTSDEIKKIILSIKSKAVGYDGISRSMVVWILDSLLPPITHIINFSLDSGQFPSLWRMAYVRPLPKISNPSLPSHFRPISILPFLSKVLEACVHKQFTGFVHRNNLVSSFQSGFRPGHSTATALLKVTGDIREAMEDTKVTVLVLIDFSNAFNAVSHDILLSILSHLMVSSEALEWFTSYLRGRQQSVRLDDSSSSWRDLDAGVPQGGILSPLLFSIFINFITQCLRCSYHLYADDLQLYSAERVEGLSDAIADVNRDLDAIKKWSDSFGVSVNPSKCQAIVIGSSRMMGRVTLSSLPPLIFNEDTTQIDEEEKGTREDYIEIEIPYNLYQHLSSDHCNVQNMCRICLATDNAVLYPLVATKENNVLAHMFMAFTSVQLLPGDGLPSSICEPCQAQVVQCYEFKTKCEKSDCMLKSILKGEFITKEELPEYSMLKFQNVKSFHAHAKSKHPSIKHLHFCNHCTESFNSEHDLKVHASIHTKGNSWKCNQCPKEFTARAMLRRHISRHMESKRFSCEVCDKTFTEQYALRRHARVHTGEILEKKHACTMCDKRYSESGLLTAHMSRHIGLRPCECSTCGKRFPSNRLLSSHRLVHSDRKPYACQYCDKRFRHESTRNTHHRTHTGEKPYVCSVCGKSFIQNSNLTLHMRTHTGERPYSCSICNRKFTSGSTLKSHERIHSGERPFSCEICGKSFTRKNLSAHMRKHTGERPYECGVCSKKFANATRLRDHHRVHTGEKPFDCSMCTLKFATKSQQLKHSKTHLAKKKRAVVHASVKDRNRENRGLVILQQVEPVPIITDRIMFNKEHGELITVNENLTIDESPEDQAKELTLNIIQKVPLEVTGELVLQDDSNMKGELLVVDNSQSNFQGDSICLNTSNVNIIDDVNYEGDMNLVTVNEGGVSISTANLEGTTVKLYQLDQSLVQIHSSGGQVTISKITSKMTANF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -