Eoch025402.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Eremobia ochroleuca
Gene Symbol
CG3556
Assembly
GCA_949629135.1
Location
OX451404.1:3313368-3325603[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.9e-07 4.3e-05 24.2 0.0 4 40 255 291 255 295 0.93

Sequence Information

Coding Sequence
ATGGGCCAGCGTTACTTAATAACTTTATGTGCTTTGATGTTCGTCGCGGTGGGCTACTGCCAAACTGAAACAGAGCCTCCAACGACTGCCACGACCAAGGCTCCTGCGACCACCACGGTGGCGACGTCCACCACCACGGCATGGGAGACAGAGACCCTGAACGAGGGCCAGGCTATACAGAAGGCCCTGCAGTATCTGTTGCAGCACCGCCAGCCTGACTGGGGGTGGGGCAATGATACGCACCATGTCATGCTGACTCTGCAGTTGGCCAACAACACTGGCAAGGAGATTGAGCAGCAAGGTCTGGAGATGCAGCTGTCAGCCAAGCAGATGGAGATCGAGATACTGCTCATGATGTCCAAGCACCACGAGTCTCCTCCTCCTCTGGGACGCCTGGCCGCCTACACCCTCGCCCTGGGAGCTCTCTGCAAGGACCCTCGCTCCTTCCACGGCCGCGACCTGGTGGCTGCGCTCCTGCACCGAGAGCCTCCACATGACCTGGAGTTCGCCTATGCGACCCTGGCTGCTTGCTCTTCAGCAGCTCATGTGAGACGCCGCCATATTAGGAGGCTCCTGGATATCGCTAATGCTGCGTCAGATCATAGTCTTGACACGATCTCGATGGTGATACTGGCGCTGCGCTGCGTGGTGCAGGACCACCGCCACCGCAGCCTCATCCACTTCGTGCGCCGCCCCATGGCCGGCCTGGCCCGGCAGCAGCACTCTGACGGTAGCTTCGGAACACTCACGACCACCGCACTAGCCATTCAGAAGGCATTAAAAGAAATTCGCGAAGAACAAATCCCAATCAGAGAAGCATCACGTAAATTTAGTATTCCGAGATGTACAATTCAAGATCGATTAAGTGGCAGAAGGACGGACGAACTAAAAAAACATGGCCCCGAGCCAGTGCTGGGAGAACAAGGCGAGAAAAAGGTTGTAGATTGGCTAATAAATATAGCCAAATGTGGTTTTCCCGTAAAGAAGCAAGAGCTATTAGACACCGTTCAAAAAATTttcaaagatttaaaaaagccGAATCCTTTTAAGGATGGTCGTCCTGGGCAGACATGGTATGTAAACTTTTTAAAACGACATCCTGAGATATCAGTAAGATCAGCAGAAGGAATCAACAAAGCTCGCGCTAGGGTGACCGAAGAATCGATTCGACTGTGGTTCCGCGAATTGGAAATGTTTTTAGAGCAAGAGGGGCACTTGGATATACTTGCAGAACCCGAAAGGATGTTTAACGGCGATGAAAGTGGTTTTTCACTTTGCCCAAAAACGGGCAAAGTTCTTGGTCCAAAAGGTTATCGAAACCTCTACCAAATAAAATCCGGAAACGAAAAAGATAATCTAACAGTGCTCGCCACATTCAACGCTGCTGGTGAAATGTGCCCGCCATTGGTGGTTTTTCCTTATATTAGACCACCAAAAAGTTTAACAGACAACATGCCACAACACTGGAGTCTAGGAAGAAGCGAATCCGGGTGGATGAATGGAGATGTATTCTTCGAATATATCACTAATGATTTCAATAATTGGATAACAGAAAATAACATCAAGAAGCCCATTCTTCTGCGATGTGGACTTTTTCCGTTTGATCCGAACGCAGTCGACTATACGAAATGTGTCCAAAACACATTGGAACAACTTAGTCAAGCGAATCGTTCGCGTGAGAACTCGGGAATAACGAATGAAGACCTCATCGCTACCCGCAAAGTGATTCGACATTTGAGACCAGTCCTAAAAGAGAAGaaaattgaaacaaaattgatcctaaaggaaataaaaaagcTGAGAAGGTCAGAACCCAGAGAACCTCAATATATTACCGGATCTGAAGACAATACAAACTCAACACTCGACGTGTCGAGCATTCATCTTTTGTCAAATTTTTCGGCTCATTCATCTGCGAATGCTTCTAATTTCGCCCCACCGCTCGTTTCCGATCCAAACCCGCTGCATGTTTCTGATGTTACGTCTGCAAATGTTACCGATCTCGCTCCGTCGCATATACCTGATCCTGCCCCACTGACTCTTCTTATTGCAGGTGAAGTTCCCAAACGTACCGCTGAGAGTTTTCCAAAACATGGCTTGTCGAATTTAGTTACATCTGATTTTAGCGGCCTTGAGTTGGGAACAGTGGTTTCTCTGGACGATATTGTGGTCATACCGTTCCAAACTAGCACACCCAAAAACCGAAACCTAAGCCCCAAATCTCTAGTTCCTATTGAAACCTCTCCATCTTCAAAACCGGACTCGAATAACGTCCCTCTATGCACGGAACAGATACACCAAATCCAGATTACAGATAATGCACCTGGAAGTTTAGAAACTTGCACCGAAGTAGTTCCAAGTAGTAGACCCAAAGAGCAATTGGGATCTGAACAGACTGACACTGAGTCAGTTACATTATCTCAAGTGCCAACTTTGAAAGACAACATGCCATTATGTACCGTTACTGCCACAGAAAAATCGGAAGACGAAAATGAAATTTTGACATTTGGCGTAACTCACCAGCAACTAGAAGGAAGGTCTCTTTTATCACTGGATGACGTTACAGTTATTCGAACTATATCAGAACATTCAGATTCTCATGACGTTCTGTCAAAGAAATTATCATCTTCCACAATTACATCCGCATCcgccaaaaacaaaaattcaatagaTCCAAACACAGTATTCGAGAAACATCTGTTTATACCCCAACCTCTAGAAAAGTCTAAACAAAACATACCCAAAGCTCGTATTCCGTCGGCGATATCAGGGAAGAAATGGCGAGTAAAGGTAAAATGCTGTAGAGATCATAATGCCTGA
Protein Sequence
MGQRYLITLCALMFVAVGYCQTETEPPTTATTKAPATTTVATSTTTAWETETLNEGQAIQKALQYLLQHRQPDWGWGNDTHHVMLTLQLANNTGKEIEQQGLEMQLSAKQMEIEILLMMSKHHESPPPLGRLAAYTLALGALCKDPRSFHGRDLVAALLHREPPHDLEFAYATLAACSSAAHVRRRHIRRLLDIANAASDHSLDTISMVILALRCVVQDHRHRSLIHFVRRPMAGLARQQHSDGSFGTLTTTALAIQKALKEIREEQIPIREASRKFSIPRCTIQDRLSGRRTDELKKHGPEPVLGEQGEKKVVDWLINIAKCGFPVKKQELLDTVQKIFKDLKKPNPFKDGRPGQTWYVNFLKRHPEISVRSAEGINKARARVTEESIRLWFRELEMFLEQEGHLDILAEPERMFNGDESGFSLCPKTGKVLGPKGYRNLYQIKSGNEKDNLTVLATFNAAGEMCPPLVVFPYIRPPKSLTDNMPQHWSLGRSESGWMNGDVFFEYITNDFNNWITENNIKKPILLRCGLFPFDPNAVDYTKCVQNTLEQLSQANRSRENSGITNEDLIATRKVIRHLRPVLKEKKIETKLILKEIKKLRRSEPREPQYITGSEDNTNSTLDVSSIHLLSNFSAHSSANASNFAPPLVSDPNPLHVSDVTSANVTDLAPSHIPDPAPLTLLIAGEVPKRTAESFPKHGLSNLVTSDFSGLELGTVVSLDDIVVIPFQTSTPKNRNLSPKSLVPIETSPSSKPDSNNVPLCTEQIHQIQITDNAPGSLETCTEVVPSSRPKEQLGSEQTDTESVTLSQVPTLKDNMPLCTVTATEKSEDENEILTFGVTHQQLEGRSLLSLDDVTVIRTISEHSDSHDVLSKKLSSSTITSASAKNKNSIDPNTVFEKHLFIPQPLEKSKQNIPKARIPSAISGKKWRVKVKCCRDHNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-