Edef008044.1
Basic Information
- Insect
- Erannis defoliaria
- Gene Symbol
- -
- Assembly
- GCA_905404285.1
- Location
- FR990093.1:1418074-1435888[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.077 6.8 8.0 1.7 1 21 296 316 296 320 0.89 2 10 0.00018 0.016 16.3 0.3 1 23 326 348 326 348 0.99 3 10 0.017 1.5 10.1 3.0 1 23 378 401 378 401 0.95 4 10 0.012 1.1 10.5 4.4 1 23 404 426 404 427 0.95 5 10 0.038 3.3 9.0 5.9 1 19 430 448 430 453 0.93 6 10 0.013 1.1 10.4 0.5 3 22 468 487 467 491 0.93 7 10 5.5e-06 0.00048 21.1 0.3 2 23 500 522 499 522 0.94 8 10 8.2e-06 0.00072 20.5 0.2 1 23 528 551 528 551 0.96 9 10 0.00019 0.017 16.2 3.0 3 23 562 582 561 582 0.98 10 10 0.00058 0.051 14.7 2.3 1 23 588 611 588 611 0.98
Sequence Information
- Coding Sequence
- ATGGATAAAGAAGCAAAAATAGATTTAAACCTGATCAATACATGCCACGGATGTTTGAGCAGTGATCGTACAGTAACTTCCCTAGCGGATAACGCAGACATATTTATAAGTTTGCTTGGAAATCACAGGCAGTGTCTTGTCTATGGCATTGAAGATATCAAACTATGTTGGGAATGTTTATCAATGCTGAGAAAGTTCAAATCATTCCAAAGTCAAGTGAGAACTGCTCAGACCGGACTTGTGAAAATGCTTTATGAAGTTAATTCACATGTCAACACTTTATCTAAATTAACAATAGTGAACAAGTACTACTACGATCAGGACATAAAACACTATGGGCATAAGAAAGTGAAGAAGAACAACGAACAATTACAATCCATAACCATTATAAAAACAGAGTTCGAAGACATTCGAACGTATTCAGATGAAGACGACACACTATTCACTTTAACAGACAACAAAACAGATAAACCTGATACGCTTGATAATAAAATTGATGAAGCCGATAATAAATTTGTTAAACCTGATAATAAAACTGATAATTTTGATATTGATGTTGACGATAAGAATGTAATTGATAATAAAGATTCTATAGCTAAAGAAGAGTTGGAGATAAACTATGAGTTCAATTATAAAGATGAGCCCGTAAAAAATGAGATGCCGACTAAAGTTAAGAAACCTAGAAGAAGGCAGGACACTCAATGTGTTAACAACGTAGTAGGATACTACAAGAGATACGCAACGTTGGTTAAAACTGAGAAAAAGGATTGGGGCAGCTGGGAGGATGTCCGCAGTCACTTCAAATCCCTCCAGTTCAGCGAGAAAGAGATGGAGGATCATTTCTTCGTGAAAGACCGACGTAACACTTCGTACGAGCGAATGCCTCACAAGTGCAATATCTGTGCAATCGGGTACACGAAAGACGATGATCTAAGACGGCACAACGACTTGAACCACCATAAGGAAGGGTCCCCATACAAATGTACTCTTTGCGGCAAAAGACAGGCCTCTGCGCAGGCGCTCGAGAAGCACTGGCGGACGCACTCTGTCGTGTTCCAGTGCAAAACCTGTACGGACGTGTGTAAGGAGAACTTCATGAGGAAACACTTGGACCACGCGCACACTAGGACCTACGACTGTACCGTCTGTCATATGAAGTTTGGTACTTTGAAATCGTTCACACTTCACTACAAGGAGATGCACATGTCCTACGTGTGCGACTACTGTAGTCACACGCTCACCACTAAGCAGAAGATGGAAAAACATATCAGTGAACATCACATGACGTATACATGCAAAGATTGCAACAAGCCTTACAAGAACTATATATATTACAAGAAACATTGTTATTCTCTGCATCCGGACAAGGTGAACTCTAAAACCAATCCGGAGCTGTCGTTCTGCGTGGAGTGTAACAAGCAGTTCCCAAGTATAGACAAATATAAAACACATCTTCGTGTGTCCGCCAGGCACAACAAGAAAAAACTACTAACGCTACCATGTCCCGAATGCGGTAAGGTTTTCGGCCGTAAAAAGAATCTGTCCTACCATTATAACTTGTTCCATTTGAAGAAGACGAAGTATTACTGCGAGATATGCGATAAGTACTTCGCTCGTCCGTACGGCCTGAGAGTGCACCGGGAGAGCGTCCACCTGAAGATAGAAAAAGTAAAAGACAAGATATGCGACTTGTGCGGTCGGGCGTTTTCTAGCCACGTGGTGCTCCGCCACCACCGGCGCACGCACACGGGCGAGCGGCCCCACAAGTGCCCGCACTGCGCGGCCGAGTTCATACAGAAATACGCCATGCAGACGCACGTGCGCACGCAGCACAAGGAGCTGCTCAGGGACGCGCCGGGCAAGGAGCCTGCCAGGAGGCCCGGCGCGCGGGAGGCTTGGCCGGAGGCCGGGTACTTCGTGTAA
- Protein Sequence
- MDKEAKIDLNLINTCHGCLSSDRTVTSLADNADIFISLLGNHRQCLVYGIEDIKLCWECLSMLRKFKSFQSQVRTAQTGLVKMLYEVNSHVNTLSKLTIVNKYYYDQDIKHYGHKKVKKNNEQLQSITIIKTEFEDIRTYSDEDDTLFTLTDNKTDKPDTLDNKIDEADNKFVKPDNKTDNFDIDVDDKNVIDNKDSIAKEELEINYEFNYKDEPVKNEMPTKVKKPRRRQDTQCVNNVVGYYKRYATLVKTEKKDWGSWEDVRSHFKSLQFSEKEMEDHFFVKDRRNTSYERMPHKCNICAIGYTKDDDLRRHNDLNHHKEGSPYKCTLCGKRQASAQALEKHWRTHSVVFQCKTCTDVCKENFMRKHLDHAHTRTYDCTVCHMKFGTLKSFTLHYKEMHMSYVCDYCSHTLTTKQKMEKHISEHHMTYTCKDCNKPYKNYIYYKKHCYSLHPDKVNSKTNPELSFCVECNKQFPSIDKYKTHLRVSARHNKKKLLTLPCPECGKVFGRKKNLSYHYNLFHLKKTKYYCEICDKYFARPYGLRVHRESVHLKIEKVKDKICDLCGRAFSSHVVLRHHRRTHTGERPHKCPHCAAEFIQKYAMQTHVRTQHKELLRDAPGKEPARRPGAREAWPEAGYFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00207325;
- 90% Identity
- -
- 80% Identity
- -