Edef021196.1
Basic Information
- Insect
- Erannis defoliaria
- Gene Symbol
- su(Hw)
- Assembly
- GCA_905404285.1
- Location
- FR990085.1:10854176-10866694[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.1 3.6e+02 2.6 5.0 1 23 88 112 88 112 0.94 2 12 0.055 4.8 8.5 0.4 3 23 121 142 121 142 0.98 3 12 1.7e-05 0.0015 19.5 0.4 1 20 147 166 147 168 0.95 4 12 1.1e-06 9.9e-05 23.2 0.7 1 23 179 202 179 202 0.96 5 12 0.52 46 5.4 2.7 1 23 208 233 208 233 0.92 6 12 0.0004 0.035 15.2 0.6 1 23 240 262 240 262 0.96 7 12 0.0041 0.36 12.0 0.1 1 23 267 289 267 289 0.98 8 12 3.6e-05 0.0032 18.5 0.2 1 23 295 317 295 317 0.98 9 12 0.042 3.7 8.8 0.3 2 23 324 346 323 346 0.96 10 12 0.57 50 5.3 0.2 8 23 364 379 353 379 0.90 11 12 0.00016 0.014 16.5 1.1 2 23 388 409 387 409 0.97 12 12 4.5 3.9e+02 2.5 0.3 3 23 417 440 416 440 0.81
Sequence Information
- Coding Sequence
- ATGCCTCCCAAACATAAGAAGATTGGGCGTCCACCAGGATCAAAGAATAAGGGTTCCATATTGCTACGGAAATCTACGAATGCAAAGAAATCTGTTGGAGTTTCCTCGATGTTGAAAGAGATAATAAGAAATGATATTAAAAGGGTAATCAAACTAGAGAATGCACCAGACAATAACAGTGGTCACAAATACCCGCTAGAAGTGACCGATCCGAAGGACCCTAACCTATCTATACGAAGTATTGAGAAAAACAAGATTATATACAACTGCAAGAAGTGTACTAACAAGAACTTCAAGTTTGAATGTAATTATAAGGAACACCTCTTACTGGAGCATTCAACAACGCCAGGCAGTGTTGGGTGTCAGCAGTGTCCTGTGGTTTGCCCTAATGACGAAACATTGCAGTCACATATTAACAAAGTTCATCAGCGGATCGTATACAACTGTCAATACTGTGGCAAGGAGTTTGTCAGACAGGCTCATGTGTTACGACACATGGCACAAAAAGGCTGTGATGGGAGTGGCATTGCATCGTTCCCGTGTGAAATATGCAATGCAACTTTTTCAAGAAAAGATAACCTGATTGTCCATCTCCGTCATATGCATATAAGAAAGCAGTTTTTCAGTTGCAAGCAAGCAAAGTGTGAATTTACTACCAAGAATTTGACAAAACTGATCAGACATTGGCATGGCAAGCATGCAGAGGTACCTAACCGGTTTGACTGTCATTATTGTGGTAAGTCAACCATGTCTCGGGCGGCAATGGCCAAGCATCTGGAAATTCATGGAGAGAAAAAATATGCTTGTGATGTGTGCGGGTATAGCACGTACACGATCGAGGTAATGCGGCGGCACATCCTGACGCACGTGACGGACAAGCCGTACAAGTGCGACGAGTGCGGCTCCTCGTACATCCAGCGCGCGCAGCTCGACCGCCACATCGAGAAGCACGCCCTTGGCGCCGCCTCGCGCTGCGACGTCTGCGAAGCCTCCTTCGACAGCAAGGCCAGAGTGATGATCCATAAGAGAAAAATACACGAAGGAATAAATAAACTAGTATGCACATTCAAAGAATGCGTTTACTCGAAAAAAGAGTTCAGCAACGAAGAAAGACTAATAAATCATATAAACAAGCACATGCAACAGAAAAATAGATGGTGGTCGTGCGAGGTGTGCAGGAAGCAGTTCACGTCCGAGATGAACATGCGACGGCATCTGAGTACGCACACGCTGGACCGCCCGCGGCGCTGCATGTACTGCGTGTCGGCGCGCGCGTACGTGCGCGGCCAGCAGCTCGTGCGCCACGTGCGCAAGTTCCACCAGGACGTGTTCCGCACGCATCTGGCACACGTGCGCAACGTCATCGTCACGAACCCGAAGAACGACCGCGTGACCAAGTCGGAGCTGGAGTCGATCCTGAACCTGCTGGACGTGGAGTCGGAGCGCATCCTGGAGGGGTACAGCGGCGCCGACGTGCTCTACGGCGGCATGCAGTCCGTGCACGAGCCGGACTCCGAGGGGCGGGCGCGAGCCGTGCCGCGTGGGAGGCGCGAGCCGAGCCTCGTGGGAGGCGCCAGCCGTGCCTCGTGGGAGGCGCGAGCCGTGCCTCGTGGGAGGCACGAACCGTACCTCGTGGGAGGCGCCAGCCGTGCCTCGTGGGAGGCGCGAGCCGTGCCGCGTGGGAGGCGCGAGCCGAGCCTCGTGGGAGGCGCCAGCCGTGCCTCGTGGGAGACGCGAGCCGTGCCGCGTGGGAGGCGCGAGCCGTGCCTCGTGGGAGGCACCAGCCGTACCTCGTGGGAGGCGCCAGCCGTACCTCGTGGTAGGCGCCAGCCGTGCCTCGTGGGAGGCGCGAGCCGTGCCTCGTGGGAGGCGCGAGCCGTGCCGCGTGGGAGGCGCGAGCCGTGCCTCGTGGGAGGCGCGAGCCGTGCCGCGTGGGAGGCGCGAGCCGTGCCTCGTGGGAGGCACGAGCCGTACCTCGTGGGAGGCGCCAGCCGTGTCTCGTGGGAGGCGCGAGCCGTGCCTCGTTTATGCCATTTCAATGTTGGGTCCATAGAGGAAGAGTCACCGCTGATGTCAGAAGAAGTTCTGGCTGAAAACATGGGGAAACTTTTGGAGCATTTAATTGATAGAGAAACTTTGCAGTGCCTTGGTTGGCCCGAGGAGTCTGTTGACAATATCCTGGAGCGCGTGATCGAGCAGTGCGGCGCGAAGGCCGCCGACCGCGACATGTGGTCCCGCGTGCAGCGCATGCGCGAGAACGCCAAGCACCTCTTCCTATACGTGGTGGACGATAAGACCGTGGCGATGATGTTGGGCACACACACCATCGATCAGATCGTGAAGCATATCCTGAACCAAGTGGAGTCGGACGGCGCGGGCGCAGCGCTCGACGACGGATCCATCGAGTACGGCAAGCCCGGCGAGATTGAAATTGAGATTGGTGTCTCGTAG
- Protein Sequence
- MPPKHKKIGRPPGSKNKGSILLRKSTNAKKSVGVSSMLKEIIRNDIKRVIKLENAPDNNSGHKYPLEVTDPKDPNLSIRSIEKNKIIYNCKKCTNKNFKFECNYKEHLLLEHSTTPGSVGCQQCPVVCPNDETLQSHINKVHQRIVYNCQYCGKEFVRQAHVLRHMAQKGCDGSGIASFPCEICNATFSRKDNLIVHLRHMHIRKQFFSCKQAKCEFTTKNLTKLIRHWHGKHAEVPNRFDCHYCGKSTMSRAAMAKHLEIHGEKKYACDVCGYSTYTIEVMRRHILTHVTDKPYKCDECGSSYIQRAQLDRHIEKHALGAASRCDVCEASFDSKARVMIHKRKIHEGINKLVCTFKECVYSKKEFSNEERLINHINKHMQQKNRWWSCEVCRKQFTSEMNMRRHLSTHTLDRPRRCMYCVSARAYVRGQQLVRHVRKFHQDVFRTHLAHVRNVIVTNPKNDRVTKSELESILNLLDVESERILEGYSGADVLYGGMQSVHEPDSEGRARAVPRGRREPSLVGGASRASWEARAVPRGRHEPYLVGGASRASWEARAVPRGRREPSLVGGASRASWETRAVPRGRREPCLVGGTSRTSWEAPAVPRGRRQPCLVGGASRASWEARAVPRGRREPCLVGGASRAAWEARAVPRGRHEPYLVGGASRVSWEARAVPRLCHFNVGSIEEESPLMSEEVLAENMGKLLEHLIDRETLQCLGWPEESVDNILERVIEQCGAKAADRDMWSRVQRMRENAKHLFLYVVDDKTVAMMLGTHTIDQIVKHILNQVESDGAGAALDDGSIEYGKPGEIEIEIGVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -