Edef001116.1
Basic Information
- Insect
- Erannis defoliaria
- Gene Symbol
- -
- Assembly
- GCA_905404285.1
- Location
- FR990070.1:20204140-20208793[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.011 0.96 10.7 1.4 1 23 184 206 184 206 0.97 2 9 7.4e-06 0.00065 20.6 0.7 2 23 214 236 213 236 0.94 3 9 2.3e-05 0.002 19.1 1.5 2 23 245 266 244 266 0.96 4 9 7.3e-06 0.00064 20.7 0.1 2 23 275 296 274 296 0.95 5 9 0.0027 0.24 12.6 6.9 1 23 304 327 304 327 0.97 6 9 2e-06 0.00018 22.4 1.4 1 23 332 355 332 355 0.96 7 9 3.1e-05 0.0028 18.7 4.8 1 23 361 383 361 383 0.98 8 9 0.0083 0.73 11.0 2.2 3 23 391 411 389 411 0.98 9 9 2.4e-05 0.0021 19.0 2.3 1 23 417 439 417 439 0.98
Sequence Information
- Coding Sequence
- ATGAATCAACTATGTCGCGCATGTTTAGTTGCGAAGGAATCATTCACATTCGTTATTTACAAGAATGTTTCTGCAGATGTTTATTCCTTTTGCACGTCTGTCGAGGTCAGTCAAGATGATGAACTACCTAAAACTCTGTGCAACACATGCCACGAACTTCTGGAAAAGTTTTCCAATTTTAAAAGTGCATGTATTCAGTCCCAGAACACCTTAGTCTTCCAGAACAATATAAAACTACCAAATGATGAAGGCATGATGAGTGATCCTGATGTTAACTGTGAACTTAATAAAAGTTGTGAAGTCGTTGTAAGTGAACTGAAAGCTAATGATGAAGCAATATCAGATTCAAATGATCATGATTTTAATAATGACTATGATGAGTTCAATCAAAGACAAAATAATTACATTAATGATCCAGGTGATACTGTCTTAGATGACTTTGGTGATGACGAACCTCTGCACGAACTTAGAAAAAAGATAGAATGTTCAATCAGAAAAGTAAAAGTGGATCCAAAGTCTGAAGAGCAAAAGAAACCAAAAGTGTTTGAGTATGTCTGTGAACTCTGCAAAAGCAAGTTCAAGTACAAAGATAGATATGAGGCACACAGACTTGAACATCAGGGTCAAACTGTAAACAAAACATGCACAATATGCAAGAAAGTGTTCATGACCTGGAGCGGGCTGCAGCGGCACACGGACAGCGAGCACACGGTGGTGCGGCTGACTACGCTCCGCTGCAAGGCCTGCGGGAAGGTGTTCAAGAACCAGCAGACGCTGCGCCTGCACACCAAGCTGCACGAGCTGCCGGAGGACTACATGTCCGTGTGTGACGTCTGCGGCAAGAGCTACTCCAGTCCTGTCACGCTCAGGCTGCACATGGAGGGGCACAACGAGAACCGAGCGCGAGACTACCCCTGCGAACACTGCGGTAAAAAGTTCTTCACAAAACACATCCTCCATTCGCACATAAAGCGCCTACACACCGGCCAGCGATACATCTGCCACATGTGCAACTACCCCTTCACAGACAAATACAACCTCGCCAAACACGTTCTCAAAATACACCAAGGCATAAAGGAACACAAGTGTGAAATCTGTAACAAGTACTTTTCCACCCACTCTACGCTTGTTATTCATAAGAGGATACACTCCGGGGAGCGGCCTTACGGGTGCTCTTATTGTGTGAAGGCATTCAGCTCCAAGAACAGGCAGATAGTCCACCACAGAACTCACACGGGCGAGCGGCCGCACCGCTGCGGGCTCTGCAACTTGGCGTTTACCCAGCTGGGGACTATGAAGCGGCACATGAAGACTCACAGCAAGATTCCTCAGCTGCCTAATGACATTGTTTATGAGAAACAGCCTGTCCAGCCAGCTGATTGTATGTCTTTAGCATAA
- Protein Sequence
- MNQLCRACLVAKESFTFVIYKNVSADVYSFCTSVEVSQDDELPKTLCNTCHELLEKFSNFKSACIQSQNTLVFQNNIKLPNDEGMMSDPDVNCELNKSCEVVVSELKANDEAISDSNDHDFNNDYDEFNQRQNNYINDPGDTVLDDFGDDEPLHELRKKIECSIRKVKVDPKSEEQKKPKVFEYVCELCKSKFKYKDRYEAHRLEHQGQTVNKTCTICKKVFMTWSGLQRHTDSEHTVVRLTTLRCKACGKVFKNQQTLRLHTKLHELPEDYMSVCDVCGKSYSSPVTLRLHMEGHNENRARDYPCEHCGKKFFTKHILHSHIKRLHTGQRYICHMCNYPFTDKYNLAKHVLKIHQGIKEHKCEICNKYFSTHSTLVIHKRIHSGERPYGCSYCVKAFSSKNRQIVHHRTHTGERPHRCGLCNLAFTQLGTMKRHMKTHSKIPQLPNDIVYEKQPVQPADCMSLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00206332;
- 90% Identity
- -
- 80% Identity
- -