Edef014883.1
Basic Information
- Insect
- Erannis defoliaria
- Gene Symbol
- -
- Assembly
- GCA_905404285.1
- Location
- FR990092.1:1030563-1064775[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.67 59 5.0 0.7 1 23 409 431 409 431 0.93 2 13 0.00021 0.019 16.0 5.7 1 23 446 468 446 468 0.98 3 13 5.1e-07 4.5e-05 24.3 0.7 1 23 474 496 474 496 0.99 4 13 0.0032 0.28 12.3 1.5 1 23 503 525 503 525 0.98 5 13 3.6e-05 0.0032 18.5 1.1 1 23 531 553 531 553 0.93 6 13 8.8e-06 0.00077 20.4 0.2 3 23 561 581 559 581 0.98 7 13 1.5e-05 0.0013 19.7 0.9 1 23 587 610 587 610 0.96 8 13 0.012 1 10.6 0.6 1 13 616 628 616 630 0.91 9 13 4.7 4.1e+02 2.4 2.5 9 23 1177 1192 1177 1192 0.92 10 13 1e-05 0.00092 20.2 2.0 1 23 1198 1221 1198 1221 0.95 11 13 0.0003 0.027 15.6 0.9 2 23 1228 1249 1227 1249 0.97 12 13 5e-05 0.0044 18.0 2.5 1 23 1255 1277 1255 1277 0.97 13 13 0.00025 0.022 15.8 1.1 1 23 1283 1307 1283 1307 0.94
Sequence Information
- Coding Sequence
- ATGGGCGACGATTGTCTGGTGTGTAATACTCGACTAGCATTGGCTAAGAACCAAGTGAAAAATGTATTTAGCGATAGGAATATTTTACCCAGCAGTAGGACTCTCTCGGAGACCCTGCAGGAAATACTTAGCAAGAGTTTTGATGAAAACGAGATCCATTCGAAGGCGTTATGCAGGAAATGTTACAAGACATGCGTAGATTACGACGAATACAAGTCAAAGATGAATATAATAAGAATGGATATGTGCGAGCAGTACAACACCACCATCCACACGACTATAAGGAAAACTCCAAACAAACCTGCAGTTAAAGAAGATAGATCTAGGAGCACCATAGTTGTGCCAGCGTCGAAGTTAATGCCAGTGCCGGCGGATTTCCAGCTGAATTTCAGTCAGCTGACCGATCTGGGCCAGGTGGTGTCGAAAGCCAACATTATCAGTAAAACTAAGTCCCCGTCGATCAACCTTAAAGTCACCATTGGATCCTCTGTACTCACACAGAGTATTAACACGTCCACTGTCAAAATAAACTTGCCCACCGACACAACCGACTCGAGTGTAATGTCAAGTGTCAAAAGTGACATTAACAAGACATGGGACATCAATATTATGCCTCAAGAGATATTCTCGACGACCGAAGATGCTAGTCAAGATGGTGATGTCGATGATGACGTGGAAAAAGGTGATGAAGATATTGTCGAGAATGGTGATGGGGATGAAATGGAAATTGATGAAGACTGCAGCTTAGCCACCCTACCTGTTACCGATGGCAGTCTGGATCCTTTTGACGGTATAAAGACGGAAGACAGCCAGATATCAGAATACACGGAATACATAACTATAACGGAGAGCGGGGACAAAAACGACGGCAATTACGTGTTGGGGAAATTCAAGATATACAACTCTCAGAACGAGGACGACGAACAACATTCCAACGAAGAGTCTCAGATAGAGCTGCAAGTGTCTGGTGACGAAGAAACTGCCAACGCTATAATAGCAGCCGCTCAGGAACAAGGTGGAGCAATCATAAAGGTGGGGTCTGGCGAGCTGTACAGGGTGAAGTCTGTACAGAGCGCGCGCGACACGGACTGCGACGCGGACAGCGTAGTGAGCAGGCAGGGCGACCTGTTCCGGTGCAACTTGTGCACATCTAACGACATGGCGAAGCTATTAGAAGCGAGCACCATGATGCAGCATCTGAAGTTGGAACATGACATAAAGTTATATCTTTGCCAGTTCTGCGGACGCGGGATGAGGAAACGGACAGAATACACCACGCATTTAGCGGAACATTCGAGGAAGTCGTCGAGCCCGCGGGCCGGACACAAGCGGCTGCACGAGTGCTCGCTGTGCAGCAAGTGCTACACGTCGCGCACACTACTACGCGAGCACATGAACACGCACACCGGCTCGCGCCCCTACAGCTGCGAGACCTGCGACAAGGCGTTCGCGAGCAAGTACACGCTACAGGCGCATCTTAAAACACACCAGGACCGGCCGCGTCCGTTCCAGTGCCTGGAGTGCAGCAAGAGCTTCCTCTCCGTGCAAAACCTAAGGCAGCACGAGAAAACCCACGCCGGGATCAAAAACTTCATCTGTAAATTCTGTAATAAAGCGTTCAGCACGCAGCACAACCTGGAGATACACGGCGTGGTCCACACGGGCGCGCGACCTTACGGCTGTCAGTACTGCGACAAGGCGTTCGCGCGCCGCGCCGAGCTCGTCGACCATCGCAGGACGCACACCGGCGAGCGTCCGTTCGAGTGCGAGGTGTGCGGCGCGCGGTTCGCGCAGCGCTCCAACCTGCACTCGCACCGGCGCGCCACGCACCTGCACGACAAGCGCCACCAGTGCCCCGAGTGCCCCAAGCGGTTCAAGCGCAGGAGGGCCGGTTCGCGCAGCGCTCCAACCTGCACTCGCACCGGCGCGCCACGCACCTGCACGACAAGCGCCACCAGTGCCCCGAGTGCCCCAAGCGGTTCAAGCGCAGGAGCGCTCCAACCTGCACTCGCACCGGCGCGCCACGCACCTGCACGACAAGCGCCACCAGTGCCCCGAGTGCCCCAAGCGGTTCAAGCGCAGGAGGTAACATATACAGGGCCGGTTCGCGCAGCGCTCCAACCTGCACTCGCACCGGCGCGCCACGCACCTGCACGACAAGCGCCACCAGTGCCCCGAGTGCCCCAAGCGGTTCAAGCGCAGGAGGTAACATATACAGGGCCGGTTCGCGCAGCGCTCCAACCTGCACTCGCACCGGCGCGCCACGCACCTGCACGACAAGCGCCACCAGTGCCCCGAGTGCCCCAAGCGGTTCAAGCGCAGGAGGTAACATATACAGGGCCGGTTCGCGCAGCGCTCCAACCTGCACTCGCACCGGCGCGCCACGCACCTGCACGACAAGCGCCACCAGTGCCCCGAGTGCCCCAAGCGGTTCAAGCGCAGGAGGTAACATATACAGGGCCGGTTCGCGCAGCGCTCCAACCTGCACTCGCACCGGCGCGCCACGCACCTGCACGACAAGCGCCACCAGTGCCCCGAGTGCCCCAAGCGGTTCAAGCGCAGGAGGTAACATATACAGGGCCGGTTCGCGCAGCGCTCCAACCTGCACTCGCACCGGCGCGCCACGCACCTGCACGACAAGCGCCACCAGTGCCCCGAGTGCCCCAAGCGGTTCAAGCGCAGGAGGTAACATATACAGGGCCGGTTCGCGCAGCGCTCCAACCTGCACTCGCACCGGCGCGCCACGCACCTGCACGACAAGCGCCACCAGTGCCCCGAGTGCCCCAAGCGGTTCAAGCGCAGGAGGTAACATATACAGGGCCGGTTCGCGCAGCGCTCCAACCTGCACTCGCACCGGCGCGCCACGCACCTGCACGACAAGCGCCACCAGTGCCCCGAGTGCCCCAAGCGGTTCAAGCGCAGGAGGTAACATATACAGGGCCGGTTCGCGCAGCGCTCCAACCTGCACTCGCACCGGCGCGCCACGCACCTGCACGACAAGCGCCACCAGTGCCCCGAGTGCCCCAAGCGGTTCAAGCGCAGGAGGTAACATATACAGGGCCGGTTCGCGCAGCGCTCCAACCTGCACTCGCACCGGCGCGCCACGCACCTGCACGACAAGCGCCACCAGTGCCCCGAGTGCCCCAAGCGGTTCAAGCGCAGGAGGTAACATATACAGGGCCGGTTCGCGCAGCGCTCCAACCTGCACTCGCACCGGCGCGCCACGCACCTGCACGACAAGCGCCACCAGTGCCCCGAGTGCCCCAAGCGGTTCAAGCGCAGGAGGTAACATATACAGGGCCGGTTCGCGCAGCGCTCCAACCTGCACTCGCACCGGCGCGCCACGCACCTGCACGACAAGCGCCACCAGTGCCCCGAGTGCCCCAAGCGGTTCAAGCGCAGGAGGTAACATATACAGGGCCGGTTCGCGCAGCGCTCCAACCTGCACTCGCACCGGCGCGCCACGCACCTGCACGACAAGCGCCACCAGTGCCCCGAGTGCCCCAAGCGGTTCAAGCGCAGGAGGGCCGGTTCGCGCAGCGCTCCAACCTGCACTCGCACCGGCGCGCCACGCACCTGCACGACAAGCGCCACCAGTGCCCCGAGTGCCCCAAGCGGTTCAAGCGCAGGAGGTTGCTGGAGTACCACATAAAGGCGACGCACACGGGCGAGCGGCCGCTCAAGTGCGAAGTGTGCCAGGCCACGTTCGTGTACCCGGAGCACTACAAGAAGCACGTCAAGATACACTCCGGCCTGCGGCCCTACTTCTGCGAGATCTGCGGCAAATCGTTCAACTCTCGCGACAACCGCAACACTCACCGCTTCACCCACTCCGAGAAGAAGCCTTACGAGTGTCTCACCTGCGGACACTCTTACATGCGGAAACGGCTGCTCATCGCGCATATGAAGACTAGCGGACATATGGCTGAATCGATAGTGGTGAATCAACCGCGAGTGACAAGAGTACATAAGTCTGATGGTGGTGTCACCACGTTAGTAGAGGTGGATCGGAACAAGTCCGGGGAAAGCGAAGATAAAGTTGAAGCTATATTCCACACGTCCGGCAAATTAGAGTCGTTGGACAAGTCGGCCGTCATCACTAAACTAGACGGAGATGAAAGCAAAATGTTCGTTGAATCCGGTGAGTTACACACTTTTCACAAGCTTTTAATTAACTTGTGTAGCGCGGGAACGGTTTAG
- Protein Sequence
- MGDDCLVCNTRLALAKNQVKNVFSDRNILPSSRTLSETLQEILSKSFDENEIHSKALCRKCYKTCVDYDEYKSKMNIIRMDMCEQYNTTIHTTIRKTPNKPAVKEDRSRSTIVVPASKLMPVPADFQLNFSQLTDLGQVVSKANIISKTKSPSINLKVTIGSSVLTQSINTSTVKINLPTDTTDSSVMSSVKSDINKTWDINIMPQEIFSTTEDASQDGDVDDDVEKGDEDIVENGDGDEMEIDEDCSLATLPVTDGSLDPFDGIKTEDSQISEYTEYITITESGDKNDGNYVLGKFKIYNSQNEDDEQHSNEESQIELQVSGDEETANAIIAAAQEQGGAIIKVGSGELYRVKSVQSARDTDCDADSVVSRQGDLFRCNLCTSNDMAKLLEASTMMQHLKLEHDIKLYLCQFCGRGMRKRTEYTTHLAEHSRKSSSPRAGHKRLHECSLCSKCYTSRTLLREHMNTHTGSRPYSCETCDKAFASKYTLQAHLKTHQDRPRPFQCLECSKSFLSVQNLRQHEKTHAGIKNFICKFCNKAFSTQHNLEIHGVVHTGARPYGCQYCDKAFARRAELVDHRRTHTGERPFECEVCGARFAQRSNLHSHRRATHLHDKRHQCPECPKRFKRRRAGSRSAPTCTRTGAPRTCTTSATSAPSAPSGSSAGALQPALAPARHAPARQAPPVPRVPQAVQAQEVTYTGPVRAALQPALAPARHAPARQAPPVPRVPQAVQAQEVTYTGPVRAALQPALAPARHAPARQAPPVPRVPQAVQAQEVTYTGPVRAALQPALAPARHAPARQAPPVPRVPQAVQAQEVTYTGPVRAALQPALAPARHAPARQAPPVPRVPQAVQAQEVTYTGPVRAALQPALAPARHAPARQAPPVPRVPQAVQAQEVTYTGPVRAALQPALAPARHAPARQAPPVPRVPQAVQAQEVTYTGPVRAALQPALAPARHAPARQAPPVPRVPQAVQAQEVTYTGPVRAALQPALAPARHAPARQAPPVPRVPQAVQAQEVTYTGPVRAALQPALAPARHAPARQAPPVPRVPQAVQAQEVTYTGPVRAALQPALAPARHAPARQAPPVPRVPQAVQAQEVTYTGPVRAALQPALAPARHAPARQAPPVPRVPQAVQAQEVTYTGPVRAALQPALAPARHAPARQAPPVPRVPQAVQAQEGRFAQRSNLHSHRRATHLHDKRHQCPECPKRFKRRRLLEYHIKATHTGERPLKCEVCQATFVYPEHYKKHVKIHSGLRPYFCEICGKSFNSRDNRNTHRFTHSEKKPYECLTCGHSYMRKRLLIAHMKTSGHMAESIVVNQPRVTRVHKSDGGVTTLVEVDRNKSGESEDKVEAIFHTSGKLESLDKSAVITKLDGDESKMFVESGELHTFHKLLINLCSAGTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -