Edef005033.1
Basic Information
- Insect
- Erannis defoliaria
- Gene Symbol
- -
- Assembly
- GCA_905404285.1
- Location
- FR990094.1:5125968-5134990[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.43 37 5.7 5.5 1 23 117 140 117 140 0.96 2 21 1.2 1e+02 4.3 1.3 2 23 169 191 168 191 0.92 3 21 0.067 5.9 8.2 1.5 2 23 214 236 213 236 0.93 4 21 0.00019 0.017 16.2 0.3 1 19 241 259 241 260 0.96 5 21 1.1e-06 9.6e-05 23.3 0.7 1 23 268 291 268 291 0.96 6 21 0.0056 0.49 11.6 0.7 1 23 296 319 296 319 0.97 7 21 0.014 1.2 10.3 4.9 1 23 328 351 328 351 0.97 8 21 0.15 13 7.1 0.3 2 23 358 379 358 379 0.96 9 21 0.25 22 6.4 0.4 1 17 385 401 385 402 0.79 10 21 5.3e-06 0.00047 21.1 1.7 1 23 473 496 473 496 0.96 11 21 0.00068 0.06 14.5 1.1 1 23 500 523 500 523 0.95 12 21 0.049 4.3 8.6 0.4 2 23 526 548 526 548 0.89 13 21 0.0016 0.14 13.3 2.5 1 23 689 712 689 712 0.91 14 21 0.059 5.2 8.4 1.9 3 23 743 764 741 764 0.95 15 21 0.0079 0.69 11.1 0.1 1 23 785 808 785 808 0.97 16 21 0.061 5.4 8.3 0.2 3 21 816 834 815 835 0.94 17 21 5.5e-06 0.00049 21.0 0.7 1 23 843 866 843 866 0.96 18 21 0.35 31 5.9 0.2 2 23 872 894 871 894 0.93 19 21 0.0016 0.14 13.3 3.5 1 23 898 921 898 921 0.97 20 21 0.0012 0.1 13.7 1.2 2 23 928 949 928 949 0.95 21 21 7.7e-06 0.00068 20.6 0.8 1 23 955 977 955 977 0.98
Sequence Information
- Coding Sequence
- ATGAACGATGGGTGTCGTGTCGTGGGGATGAAGAATTTAAATCGCGCCAAAACCGAAGGCAGACAAAAGCGATCAGGGGGTTCTGAGACAACACCGACGATCCCTAAACTAAAAACCGAAATCACCGACTTTAACATCGAAATCAACGACTCTAACATCGAAATCAACGACTGTAACATCGAAATCAACGTCTCTAACATCGAAGACGAAGACGACATGAACTTAAAAACTAAACACAGTAGCAAAGCCCCAGCGGAGAAAACACTTCAATGCTTTAAAGTCAGGATGAACTTAGCTTGTATTTTAAACAACTCTACAGCCATGCCCTTTTCGCATGCTAAAAGTAAATTCAACTGTTTCGTCTGCCAGGAAGGATTCCATAAATGTGATACGTTGCAACAGCATTTTAGGAACGAACATGCCAATTATACATTTAATACTCTAGACAACGTAATCAAACGAGTCAACAAAAATACTTCTTTAAAATTAGACATTGCCGATTTAAGTTGCAAACGATGTATACAACGTTTCTGCGATCTAAAAACACTAATCGATCATCTCGTTTCCGCTCACGATGTGGAATACGACAAATCTGCGATAGACATAATCCAACCGTTCAAACTTAAAGACGACGATCTTAGATGCCACGTTTGCGATCAGAAATTTGATTTCTTCATCAAACTTGTTTCACATTTGAACGATATGCACGAGGATAAAAAGTATATGTGCGATTTGTGTGGGAAATCTTTTAAGGATTTGAGCTCTTATAATTTACATGGGTGGCAGGTTCACGGGCCGGGCTATAATTGCCCCGATTGTGGTAGGCGGTGCTCTACACCGTCCCTTTTGAAGGAGCACATGGCAAGCAATCACGGCAAAGGAAAATTCAAATGTCCGGAATGCTCTGCCGAGTTTACGTCCATTTACAAAAGGAAGAAGCACGTCATGTCGATACACAAACCTAAAGACATCCCTGCTTGCTTTAAATGCCCTCATTGTGAGAAGGTATTCACTTGCACGTCTCAGAGAAACGTACATGTTAGAAAAGTACATTTGCAAGAGAAAAACGAAGTGTGTCCTATATGTAAGGCGGAATTATTCAACAAGACACGACTTAACCTCCACATGGTGAAGCATTTGAGGGAAAGGAACCACGTTTGCGATATTTGTGGGAAGAAGTATCAGTGGAAGAAGAACCTTAAACGTGCATCGCCGCCCGCGCCCCGCGTCATCCCCGCGCGCTTCATCCCGCCCGGTGGTTACCGCGCGTCACCGCCCTCCGCGCACCTCGCCCCGCGCCGGCCCGCGAGCAAGGACTCTCTCCTGCGACACCGGCGCGCGCGCTTCTATTATCAGCAGGCGAAGTCGTTGAGGGGTCTAATTCAACATACGAACAAGGAACATCCCGTCAATTACTTTGAATGCGATGAGTGTGGCCGCAGATTTAGAAGGAAACATGATTTGATGGGTCACATTAACCAGACACACAAAGAAGAATACAAATGCCCCAAATGTGCGGTAACATACAAGACGAAAGCGGAGTACACGAAGCATAAGAACGAAGATCACATTCCGCAATGCAACGTATGCTTCAAGACGTTTTCGTCAGCCGCGGTGAGACTGCAGCATCTAAAAGATGAGCATGATATATCTATGGGTGGCATTTGTGGTTTTTGCCACAAGAAAATGAATTCGCGTTTCGCTTTCCTCGATCATGCTGGCAAATGCTCCGTTGGAGGACCAGTGAACATTGAAGTGTCTTTGACACCAGTCAAGGTAGATACGGAAATGATATATCCAGGATCAAACCCAAATATGCCATTTCCAGTATCAGTCCCAGATACGTCAATGCCATTCCATTCCTTTCAATCTGCGTTAGTTAAGCCAGAGAAAGATGCGACTTTAATTAAGTCGGAGAAGATAAAGAGAGATGGGTCTCCAGTTGTGCCAGAGACCCTCACAGCTATGGCTGTTTGGCGAAATGCTAAAAGAAGCGTCAGGAACAACATTGCCTATGTTTTCAACAACACTACAGTCATTCCCTTCAAACGGTACCACAATAGATTTAGATGCTTTTACTGTCCGAAAGAATTCATTACCTGTAACGAACTCAGGAATCATTCACTGGAAGAACATCCTTATTGTGATGTTAAACTGAAATGCATGAAATTGACTGGCCTAGGCCACCAGTACATGGCGATTAAAGTGGATTCTTCAGTTTTGGCCTGTAAGTTATGTCACTGTGAATTTGACGATTTTAGGAGCTTGATATCTCATTTAGAGATGGTCCATGGCGCCCAACTCCGAGACTGCGCCGACAAATTGTTACCATTCAAACTGGTGGATGATCAGTACCCATGCCCTCAGTGTGGTGCGGAATTCGCAAGCTTTGGTAATACGCTGATCCATTACAATAAAGAACACAATGTAGAGAACAGAGTTCTGTGCGTGACTTGTGGTGAATCATTTCATAATGTGACGGCGCTGCAAATCCATAGGAACCGCTGCAATGTAACCCCGGAGCGCTATAAATGTAACAGATGCGATGTAGGGTTCTATAATAAAAGCGAACTAACACGCCACATGGGTAGGGCGCATAAAAAGAAAGTCTTAAAATGTCCCGAGTGCACAGAGTTGTTTGCGTCCGAACATGCCAAAATGGTCCATGTTATCAAGGTGCATAAAGGCGGTCACAAATGCGTCCATTGCGATGCCTCTTTCATATTTCGCTCGCGGTTGATTCAACATATTAAAAGGTTGCATCTTCTAGAGAAAAATGAGAAATGTGCTTATTGTGATAAGATGTTCTTTGATCAGCGTAGGTTGAAGAATCATTTGGTCTTGCACACTGGGGAGAGAGCTTTTAGCTGTGATTACTGTGACAAGACGTTTTCGTGGAAAAAGAACTTGATCAGCCACATAAATGTGCATTTAAAGAATGCTGGCTATGTTAGACGAGAACGGAAAGTAAACAAAATTTAG
- Protein Sequence
- MNDGCRVVGMKNLNRAKTEGRQKRSGGSETTPTIPKLKTEITDFNIEINDSNIEINDCNIEINVSNIEDEDDMNLKTKHSSKAPAEKTLQCFKVRMNLACILNNSTAMPFSHAKSKFNCFVCQEGFHKCDTLQQHFRNEHANYTFNTLDNVIKRVNKNTSLKLDIADLSCKRCIQRFCDLKTLIDHLVSAHDVEYDKSAIDIIQPFKLKDDDLRCHVCDQKFDFFIKLVSHLNDMHEDKKYMCDLCGKSFKDLSSYNLHGWQVHGPGYNCPDCGRRCSTPSLLKEHMASNHGKGKFKCPECSAEFTSIYKRKKHVMSIHKPKDIPACFKCPHCEKVFTCTSQRNVHVRKVHLQEKNEVCPICKAELFNKTRLNLHMVKHLRERNHVCDICGKKYQWKKNLKRASPPAPRVIPARFIPPGGYRASPPSAHLAPRRPASKDSLLRHRRARFYYQQAKSLRGLIQHTNKEHPVNYFECDECGRRFRRKHDLMGHINQTHKEEYKCPKCAVTYKTKAEYTKHKNEDHIPQCNVCFKTFSSAAVRLQHLKDEHDISMGGICGFCHKKMNSRFAFLDHAGKCSVGGPVNIEVSLTPVKVDTEMIYPGSNPNMPFPVSVPDTSMPFHSFQSALVKPEKDATLIKSEKIKRDGSPVVPETLTAMAVWRNAKRSVRNNIAYVFNNTTVIPFKRYHNRFRCFYCPKEFITCNELRNHSLEEHPYCDVKLKCMKLTGLGHQYMAIKVDSSVLACKLCHCEFDDFRSLISHLEMVHGAQLRDCADKLLPFKLVDDQYPCPQCGAEFASFGNTLIHYNKEHNVENRVLCVTCGESFHNVTALQIHRNRCNVTPERYKCNRCDVGFYNKSELTRHMGRAHKKKVLKCPECTELFASEHAKMVHVIKVHKGGHKCVHCDASFIFRSRLIQHIKRLHLLEKNEKCAYCDKMFFDQRRLKNHLVLHTGERAFSCDYCDKTFSWKKNLISHINVHLKNAGYVRRERKVNKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -