Edef005039.1
Basic Information
- Insect
- Erannis defoliaria
- Gene Symbol
- -
- Assembly
- GCA_905404285.1
- Location
- FR990094.1:5166237-5170542[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.32 28 6.0 0.5 1 23 24 46 24 46 0.94 2 17 0.007 0.62 11.3 0.2 2 23 71 93 70 93 0.96 3 17 0.0017 0.15 13.2 2.4 1 23 144 166 144 166 0.94 4 17 3.1 2.7e+02 2.9 0.4 3 23 173 193 172 193 0.87 5 17 0.00051 0.045 14.9 1.5 2 23 198 220 197 220 0.96 6 17 2e-05 0.0018 19.3 0.8 2 23 227 249 226 249 0.95 7 17 3.1e-05 0.0028 18.7 0.3 3 23 257 277 256 277 0.97 8 17 0.00022 0.02 16.0 2.8 2 23 284 306 283 306 0.95 9 17 0.00068 0.06 14.5 1.2 1 21 374 394 374 397 0.90 10 17 0.067 5.9 8.2 0.2 2 20 423 441 422 445 0.91 11 17 0.2 17 6.7 2.4 3 23 469 490 467 490 0.93 12 17 0.0015 0.14 13.3 0.0 1 23 496 519 496 519 0.96 13 17 0.0051 0.45 11.7 0.3 2 23 543 565 542 565 0.97 14 17 0.0012 0.11 13.7 0.3 1 23 572 595 572 595 0.96 15 17 0.006 0.53 11.5 1.4 1 20 601 620 601 623 0.94 16 17 0.0029 0.26 12.5 4.1 1 23 629 651 629 651 0.98 17 17 1.2e-06 0.0001 23.2 1.7 1 23 657 679 657 680 0.96
Sequence Information
- Coding Sequence
- ATGAGGGAAAACGTCACTAAAGTCATTCTCAACTCCACCGTCATGCCCTTCCGATGGCTAACCAGTTCCTACAGGTGCTTCTACTGCTACGATATATTCAAAACCGTACCAGCTTTAAAGGCCCACAATATTCAACACAAAAGACAGGAAATTACGAAGGTTATGCAGAAATATTGGGAGAATGATGTCTTCGTTGACATATCAAAACTTACCTGCACTGAATGTTGGGAAGATTGTGAAAGTTTAAGTGAGCTTGTTGATCATTTAATGACGGAACATGGTGTTGACTACAATGATGATACGGAATTCTGCTTCAAACCTTTCATATTGGAAGATAATGAAGTGATATGTGGCGTTTGCAATGCTAGCTCCAAATTGTTCAACCAAATCCTCCTTCACGCGACAAAGGAGCATAGAAACCCGAAAGATTATATTTGCGATATCTGCGGAAGGTCGTTCAAGAAGCATCAATATAAGATGCATGTGCAAAACGAACATAGAAGGAAAAAAGTCAACTGCACGCGCTGTGGCGAACTCATCAATTTGTACGCGTTGAGGACCCACATGTTCAAAGCGCACGGCCGTAAAGTTGAATGTAAAATGTGTAACGAAACCTTTTCCAGTTACTACAAAAGGCGGCAACATATGACGACAGTGCACCAGACTCAAAATGAGATTAAATGCCCTAATTGTCCAAAAACATTCTACTTTCAAAGCAGGTTGACTAGACACGTAAAAGAAATTCATTTGAAAGAGAAAAATGCTATGTGCAACGTGTGTGGGTGGACCACCTACTCTAGAAGCCAGTTGGAAGACCATATGCTGAAACATAAGGAAACCAGAGATGTTTCATGCTCATTCTGCAATAAAACGTTTAAGGCGAAGAAACATTTGAGGCAACATTATTTAATAGCGCATGCTGAGTTGGGAGGAGATAATGATATAGAGCCTACATATTTCGGAGAACAAAGTGAAATAGAGCAGGTCTATGAGGAGGATGAAAGTTTCGATTTCACCAGTAGCGTTTCACCGTGCCGACGGAAAGACGATCGTGTGAAACTATTAACTATAATTATAGAAAACTCAACAGTCGTCCCTTTCCGATGGCACTGCAGTAAGTACATGTGCTTCTATTGCGGGTGCCCGTTCAATGACAGTATACAGTTACAAAAACACAACGCCGAAGAACACAAGGATGCCAAAATAGGGAGCGCTTTCAGAATTCTACTCAGGAACAGCAAAATCAAGTTGGATATATCAGTAATTAAGTGCACAATATGTTTGGAAGAGTTTTCTAAACTGGACTATCTGATCGACCATTTCGGAGACACTCACGATTTTAAAATAGACCACAGTTTGAAAACGGAGCTGTTTGCCTTTAGATTGTCGGAGGAAAAAATGGCTTGCGAAGAATGCGGGGAGGAATTCCACTTCTTTGCGACTTTACTAAAGCATTTTCATTCGTTTCACAATAAAAATGAGCCTTATATTTGCGAAATATGCGGCATGGGCTTCGTTGCTAAAGCTAACGTCGCTGCTCACGTTAGAAATGTCCACACGAAAGACGTTCCATGCGACAAATGTGTCGACAAAAATTGCGACCATATAAAAAAACCCTCCTTCAAAAAATGCTCCAAATGCTCTGAAATTCTGGCCACTCCCTACCTGTACAAACGACATTTGGCGACGGTTCACGATGTCAAAACTCACCAGTTTCCGTGCGATTTGTGTCCTCGAGTATTTCCTATAAAATATCGCCTTATAAAGCATAAACAGAGAGTCCATTTGAAGCAGCGAAGTTTTGCCTGCGAAATTTGCGGGTACAGAGCATTTAGTAAGGAATATTTGACTCGCCATATGGTATGTCACGACGATGCAAGACCGTTTGAATGTGAGTTTTGTAAGAAAACGTTTCAGAGGAAAAAGACATTGGAGTTTCATAGAAGGATACACACTAACGATAAGAGATATGTCTGCAAAGAGTGCGGGAAGGCGTTTGTGCAAACAACGAGCTTAAAGCTTCATTATAGAGTGCATCATCCGAAGGACGGGAGCAAAGAGGCAGACTGGACTTAG
- Protein Sequence
- MRENVTKVILNSTVMPFRWLTSSYRCFYCYDIFKTVPALKAHNIQHKRQEITKVMQKYWENDVFVDISKLTCTECWEDCESLSELVDHLMTEHGVDYNDDTEFCFKPFILEDNEVICGVCNASSKLFNQILLHATKEHRNPKDYICDICGRSFKKHQYKMHVQNEHRRKKVNCTRCGELINLYALRTHMFKAHGRKVECKMCNETFSSYYKRRQHMTTVHQTQNEIKCPNCPKTFYFQSRLTRHVKEIHLKEKNAMCNVCGWTTYSRSQLEDHMLKHKETRDVSCSFCNKTFKAKKHLRQHYLIAHAELGGDNDIEPTYFGEQSEIEQVYEEDESFDFTSSVSPCRRKDDRVKLLTIIIENSTVVPFRWHCSKYMCFYCGCPFNDSIQLQKHNAEEHKDAKIGSAFRILLRNSKIKLDISVIKCTICLEEFSKLDYLIDHFGDTHDFKIDHSLKTELFAFRLSEEKMACEECGEEFHFFATLLKHFHSFHNKNEPYICEICGMGFVAKANVAAHVRNVHTKDVPCDKCVDKNCDHIKKPSFKKCSKCSEILATPYLYKRHLATVHDVKTHQFPCDLCPRVFPIKYRLIKHKQRVHLKQRSFACEICGYRAFSKEYLTRHMVCHDDARPFECEFCKKTFQRKKTLEFHRRIHTNDKRYVCKECGKAFVQTTSLKLHYRVHHPKDGSKEADWT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -