Edef005762.1
Basic Information
- Insect
- Erannis defoliaria
- Gene Symbol
- -
- Assembly
- GCA_905404285.1
- Location
- FR990088.1:5068894-5087478[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4e-05 0.0035 18.3 6.9 1 23 195 217 195 217 0.98 2 13 2.2e-06 0.0002 22.3 0.2 3 23 231 251 230 251 0.98 3 13 0.0002 0.018 16.1 2.1 2 23 260 281 260 281 0.98 4 13 0.0003 0.026 15.6 2.1 1 23 287 309 287 309 0.98 5 13 7.6e-06 0.00067 20.6 2.0 1 23 315 337 315 337 0.98 6 13 1.1e-05 0.00096 20.1 8.5 2 23 344 365 343 365 0.97 7 13 2.2e-05 0.002 19.1 0.8 1 23 371 393 371 393 0.98 8 13 3e-05 0.0026 18.7 1.9 1 23 399 421 399 421 0.98 9 13 0.00044 0.038 15.1 1.2 1 23 427 449 427 449 0.98 10 13 0.0018 0.16 13.1 0.4 1 23 455 477 455 477 0.97 11 13 1.5e-05 0.0013 19.7 0.4 1 23 483 505 483 505 0.98 12 13 2.3e-06 0.0002 22.3 0.6 1 23 511 533 511 533 0.99 13 13 0.00017 0.015 16.4 3.0 1 23 623 645 623 645 0.99
Sequence Information
- Coding Sequence
- ATGGCTGGAACAGCGGTCAATAATAAATTGAAGAATTTGAACTTCGAGAAAATATGTAGAGCTTGCTTGGAGGTAAAAAGAGACATGCGACCTCTGTTTGAGCAGCTCACAGCGACGATGCTGATGGGCATTTCGAAAGTGCAGGTGGCAGTAGGCGACGGGTTGCCCTCGCAGTTGTGCCTGCAGTGCGTCCACCAGATCTCGCGCTGCCACGCGTTCAAAGACCTCGTGGAACGGAACGACCTGGCCCTGCGGGAACATGCCAAGTATCTCGCGGAGGAGGCGCTCAAGAAGGAGCAGGAAGAGAAAGAGAAGTTGATGCAACTCAACTGTCAGGATAACTACATCCAATACATGGAGGTTCCGCTGACGAATCAGTCGCAGATCCTGGATGGCTTCTTTGCGCCCGCGGCACCTGAACTCGACCCGCCCAAGGACATCGACCTCAAAGACGCCTTTGAAGACAAGTCAGATGTGGTGCCCTCTACGTCGACAAAAGAAGAAGAAGCTCTCAACTCTGATGAAGAGAACTACCTCCAGCTGGTGGTGTTCCAAGCGACTTCAACGGTGTGTCCCGGCCGGCATGTGTGCAACCTCTGCCACAAGGAGTTCAAGCACGCACGCTGGCTGAAGCAGCACATGAGGTCGCACTCCAACTGGATCAAGGCTAATTGTAAGAAGCCACCGATGTGCCCCATTTGTGAGAGGACTTTTAAGGGTCCAGGGATGCTAAAAATGCACATGCGGACCCACGAGCAACGTCCCCCGAAGCAGCCGACTTGCTCAGTCTGTCAGCGCCAGTTCCCGACGAAGACCCTGTTGTACCGGCACCGACAGACCCACTTCGAACAGAAGACGCATCAGTGCACCGTCTGCGAAAAGCGCTTCTTCAGCGGCTACGCGCTCCGCTCGCACATGGCGCGTCATAGGGGAGAGAGACCTTTTACGTGCTCCAATTGTAACAAGAGTTTCTATAATCCCACGGATTTGAAGGTCCACTTCCGCCTGCATACCGGCGAGAAGCCATTGAAATGCAACGAGTGTAACAAGACCTTCCGGCGACACTCCACGCTCTGCCAGCACATGAAGAAACACAAGGGCATTCGGAACCACGTCTGCACGGTATGCAACAAGGGATTCTACGAGATCTCCAAACTGAATGCGCACATGAGGGTGCATACTGGCGAGCGTCCCTTCGAGTGCCAGTTCTGCACGCGGCGGTTCGCGCAGCAGTCGGCGCTGATCTACCACAAGCGCACGCACACCGGCGAGAAGCCCTTCTCGTGCAAGCTGTGCTCGGCCCGGTTCACCACCTCCTCCGCAAGGAACAATCACATGGTCACGCACACGGGGAACAAGAAGTTCGTGTGCCAGATCTGCCTGAAGGGGTGCACGTCGCGCGCCGAGCTGCGTGTGCACGCGGCGAGGCACAACGGGGAGAAGCTGTTCGAGTGCGGCATCTGCTCGCAGCGGTTTAGCTCCGCGTCCTACCTGGCCGTGCACCGGCGGTACCACACCGGCGAGCGCAAGTACCAGTGCGGCGTCTGCGGGAAGGGCTACATAGAATCCAGTTCATACAAGAAGCACTTGAGGACCCACGAGCCGAAAGACACGGATACTACCAACTCCGACAACAGTCAAGAGCTGCAGGACGGCACCAAAGAGGAGGACACGGTGGCGGAGACGTCGTCGGTCATCAGTGGGGGCGATGAGCAGATTGAAATTCAGCACCAGGGTCAACAAAGTCCAGTCCAAATCCAAGCTCAAAGCCAAGTCCAATCCCAAGTCACGGAGACTTTGCTACAAGATCCTCTCGGCGGGCTGCAGCCGGCCGCGGAGGCGCCGGCGCAGCCGCTACAGCGCCGGTACAAGTGCGGAGTCTGCGTTAAGACATACATGTACCTGCATAGTTTGAAGAAACACATGTTGACACATTTGCAGATATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCAGTGCCGATACACGCGCAACACGTGCCACAGAGCATCACCGTCTCGGGCGTGCAGCAAGCGGGCCAGCACGCGTATCCGGTGATATCTTCCGTGCAGTCCCTGCAGCTTCAGCAAACTCAACAGGTTAACACGCAACCTCAGCAGCTGCACGTGCAAACGATCCAGATCCATCCTCAGCAGCAACACCAGCCCATACAGATACATGCGGTCGGAGTGCAGCAAGTGCAACAACAGCAGCTGCACGTCGCCACGTCTAGCTGCCAGACTATGCTTCCCAATATCCTGCAGCTGCAGCCGGCGACGGTGGTGTCGGGGCTGGGCCAGCAGGAGCTGGGCGGCGTGGCGCACCGCATCATCCTGCAGCCGCAGCACCAGCAGCCGCACCAGGCCGTCTACACCATCCACCACTGA
- Protein Sequence
- MAGTAVNNKLKNLNFEKICRACLEVKRDMRPLFEQLTATMLMGISKVQVAVGDGLPSQLCLQCVHQISRCHAFKDLVERNDLALREHAKYLAEEALKKEQEEKEKLMQLNCQDNYIQYMEVPLTNQSQILDGFFAPAAPELDPPKDIDLKDAFEDKSDVVPSTSTKEEEALNSDEENYLQLVVFQATSTVCPGRHVCNLCHKEFKHARWLKQHMRSHSNWIKANCKKPPMCPICERTFKGPGMLKMHMRTHEQRPPKQPTCSVCQRQFPTKTLLYRHRQTHFEQKTHQCTVCEKRFFSGYALRSHMARHRGERPFTCSNCNKSFYNPTDLKVHFRLHTGEKPLKCNECNKTFRRHSTLCQHMKKHKGIRNHVCTVCNKGFYEISKLNAHMRVHTGERPFECQFCTRRFAQQSALIYHKRTHTGEKPFSCKLCSARFTTSSARNNHMVTHTGNKKFVCQICLKGCTSRAELRVHAARHNGEKLFECGICSQRFSSASYLAVHRRYHTGERKYQCGVCGKGYIESSSYKKHLRTHEPKDTDTTNSDNSQELQDGTKEEDTVAETSSVISGGDEQIEIQHQGQQSPVQIQAQSQVQSQVTETLLQDPLGGLQPAAEAPAQPLQRRYKCGVCVKTYMYLHSLKKHMLTHLQISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPIHAQHVPQSITVSGVQQAGQHAYPVISSVQSLQLQQTQQVNTQPQQLHVQTIQIHPQQQHQPIQIHAVGVQQVQQQQLHVATSSCQTMLPNILQLQPATVVSGLGQQELGGVAHRIILQPQHQQPHQAVYTIHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00206308;
- 90% Identity
- -
- 80% Identity
- -