Edef025384.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Erannis defoliaria
Gene Symbol
-
Assembly
GCA_905404285.1
Location
FR990076.1:13155751-13190033[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00034 0.03 15.4 0.1 1 20 355 374 355 374 0.95
2 16 0.00017 0.015 16.3 4.2 1 23 373 395 373 395 0.98
3 16 2.8e-05 0.0025 18.8 5.3 1 23 401 423 401 423 0.97
4 16 7.7e-05 0.0068 17.4 6.7 1 23 429 451 429 451 0.97
5 16 7.6e-05 0.0067 17.5 6.5 1 23 457 479 457 479 0.97
6 16 3.7e-07 3.2e-05 24.7 1.9 1 23 485 507 485 507 0.98
7 16 5.6e-05 0.0049 17.9 6.9 1 23 513 535 513 535 0.98
8 16 1.9e-05 0.0017 19.3 6.6 1 23 541 563 541 563 0.98
9 16 2.2e-06 0.00019 22.3 5.6 1 23 569 591 569 591 0.98
10 16 4e-05 0.0036 18.3 5.4 1 23 597 619 597 619 0.96
11 16 8.3e-06 0.00073 20.5 5.2 1 23 625 647 625 647 0.98
12 16 2.3e-06 0.0002 22.2 6.0 1 23 653 675 653 675 0.98
13 16 4.5e-05 0.0039 18.2 7.9 1 23 681 703 681 703 0.97
14 16 1.5e-06 0.00013 22.8 5.2 1 23 709 731 709 731 0.98
15 16 0.0003 0.026 15.6 1.1 1 23 738 760 738 761 0.95
16 16 0.02 1.8 9.8 5.6 1 23 769 791 769 791 0.99

Sequence Information

Coding Sequence
ATGAATCCGGATCACCACAACATAAACCCGGGTGGTGGTCAGCCTCCTGGGAGTTCAGAGCCTCAAGGGCAGAGAGTGCAGGCTACACAACAGCAACAGCAAGGAAGCTTGCCTGCGACAACTTCTGCCACGGACTTGAGAGTGAACACAGCTGCTGTAAATGTAGCTTTGTCCAGCGTTGCAAAATATTGGGTGTTTACGAACTTATTCCCTGGACCAATTCCACAAGTATCTGTTTATGGATTACCCACTGGAACTAGAATTGAAAATGGAAAACCTGTGCAGGTCACTGTATCTGCAGGCGCCCAGCAAATACCTGTATCACAGATTATTGCCACACAGTCAGGGCAAACACATGAATCGCTGGTTGCTCATAGTCAGCACAGCCAGGAGCTTGTGCAGCAGGTCGCAGGAAGCTCCCAGGTTACGGTCTCCGGCCAGGCAACTCATCAGCAGATCCAGCTGACTGTCAGTGAAGATGGCATCGTCACCGTTGTCGAGCCCGGCAATAGTAAGATGGTCGACAAGGAAGAACTGCATGAAACTATCAAACTACCATCAGACCATCCCTTGACCATCCACCAGTTGCAGCAAATTGTAGGCCAACAGCTCGGTACACAAGTGCTAGAAAACGTAGTGCGCATAGAGCAAGCTACGGGCGAGCCCGCCAATATACTCGTGACGCACAACGCCGACGGGACGACGTCTATCGAAGCGAGCGCGTCAGATCCGCTCGCCATCGTGAAAGATGAGAAGACACAGTCGAAGATGGAAACTGCACAGTTCGCTATACCTGCAGAGATTAAGGATATTAAAGGCATTGATTTGAAGAGTGTGGGAGCGATGGGCATGGAAGGAGCAGTTGTGAAGATATCTACTGGAGCGGACAACGACATGACTGCCATGTATAAAGTCAATGTTGAAGACCTTTCACAGCTGCTGGCTTATCATGAAGTCTTTGGAAAGCTGAATACTGATGGCCAGACGCAAAATAAAGGCGAATTAGAAATCGAAGTGCCGGGCCCTAGCCAGATGTCTGAGGCGGAATCATCGCCCGGCCATCATTCCTGTGATATCTGTGGGAAAGTGTTCCAGTTCCGGTATCAACTCATTGTTCACAGGTGTGAGTTCTGTGCGAAAACGTTCACTCGCAAGGAGCACATGGTGAACCATGTGAGGAAGCACACGGGCGAGACGCCACATCGTTGCGACATCTGCAAGAAAAGCTTCACTAGGAAAGAACACTTTATGAACCACGTTATGTGGCATACAGGAGAGACCCCCCACCGATGCGACTTCTGTTCAAAAACGTTTACCCGTAAAGAACACCTGCTAAACCATGTAAGACAACACACGGGCGAGTCTCCTCACCGCTGCAACTTCTGTTCGAAGTCGTTCACGAGACGCGAGCACCTCGTCAACCACGTTCGACAACACACGGGGGAGACTCCTTTCCAGTGCGGATACTGCCCCAAGGCGTTCACCAGGAAGGACCATCTCGTGAACCACGTCCGCCAACACACGGGCGAGTCCCCGCACAAGTGTGCGTTCTGCACCAAGTCGTTCACCCGCAAGGAGCACCTCACGAACCACGTGCGCCAGCACACCGGCGAGTCGCCGCACCGCTGCACCTACTGCGCCAAGTCCTTCACCAGGAAGGAGCATCTTACCAACCACGTCAGACAGCACACGGGCGAAACGCCACACAAGTGCACGTACTGCCCGCGCGCGTTCTCGCGCAAGGAACACCTCAACAACCACCTGAGGCAACACACGGGCGTCACGCCGCACGCCTGCTCGTTCTGCAACAAGACCTTCACGAGGAAGGAGCATCTCGTCAACCATGTCAGGCAACACACGGGCGAAACTCCATTCAAGTGCACGTTCTGTTCGAAGTCGTTCTCTCGCAAGGAGCATCTCACGAACCACGTGAATCTCCACACAGGGGAGACGCCGCACAAATGCCCCTTCTGCACTAAGACATTCTCGAGGAAAGAGCACCTCACCAACCACGTCAGGATCCACACGGGCGAGTCGCCGCACCGCTGCGACTTCTGCCAGAAGACGTTCACCCGCAAGGAGCACCTCACGAACCATCTGAAGCAACACACGGGCGACGCGGCGCACACCTGCAAGGTCTGCTCCAAGCCCTTCACGAGGAAGGAGCATTTGATTACGCATATGAGATCTCACAGTTGTGGCGAAAAGCCGTACAGCTGCGGCGAGTGCGGCAAGTCGTTCCCACTGAAGGGCAACCTGATGTTCCACGAGCGGTCGCACCACAAGGGCGGCGGCGCGCGCCCCTTCCGCTGCGACGTCTGCTCGAAGGACTTCATGTGCAAAGGGCACTTGATCACCCACCGCCGCACGCACGCCGACGCGGGCCCTGCGCCGGCGCCGGACGCGCGCCCCGCGGGAGACGACAGCTGCGTCAAAGTGGAATCCGACCCTCTCGCACTGGATACCAAACCCAAAGTTGAAGAAGCGCGGCAAGCTGAAAACATCATAGTCACACATCCACAAACTTCACCAGACGATGCTGCTGAGATGCAAATGTCGGATCAACAACCCCGGTCTGTAACCGTATCAACCGCATCTGGCATTGCATCGGCAACGTTTACCCACACGGTGGCCGCACAGCACCACGCTGGCGCGGCCATCGCTCACCATCCCGTCAGCGTCACATACTAG
Protein Sequence
MNPDHHNINPGGGQPPGSSEPQGQRVQATQQQQQGSLPATTSATDLRVNTAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQVTVSAGAQQIPVSQIIATQSGQTHESLVAHSQHSQELVQQVAGSSQVTVSGQATHQQIQLTVSEDGIVTVVEPGNSKMVDKEELHETIKLPSDHPLTIHQLQQIVGQQLGTQVLENVVRIEQATGEPANILVTHNADGTTSIEASASDPLAIVKDEKTQSKMETAQFAIPAEIKDIKGIDLKSVGAMGMEGAVVKISTGADNDMTAMYKVNVEDLSQLLAYHEVFGKLNTDGQTQNKGELEIEVPGPSQMSEAESSPGHHSCDICGKVFQFRYQLIVHRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCAFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFSRKEHLNNHLRQHTGVTPHACSFCNKTFTRKEHLVNHVRQHTGETPFKCTFCSKSFSRKEHLTNHVNLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDAAHTCKVCSKPFTRKEHLITHMRSHSCGEKPYSCGECGKSFPLKGNLMFHERSHHKGGGARPFRCDVCSKDFMCKGHLITHRRTHADAGPAPAPDARPAGDDSCVKVESDPLALDTKPKVEEARQAENIIVTHPQTSPDDAAEMQMSDQQPRSVTVSTASGIASATFTHTVAAQHHAGAAIAHHPVSVTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-