Ebal029386.1
Basic Information
- Insect
- Episyrphus balteatus
- Gene Symbol
- RGM1
- Assembly
- GCA_026256485.1
- Location
- JAGTYB010000047.1:1688437-1692499[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2 2.4e+02 3.3 1.8 3 21 558 576 556 580 0.91 2 11 0.0051 0.61 11.5 0.4 2 20 602 620 601 622 0.92 3 11 0.56 68 5.0 0.4 1 23 642 666 642 666 0.92 4 11 0.00056 0.068 14.5 0.5 1 23 671 695 671 695 0.93 5 11 2.4 2.8e+02 3.1 0.5 2 23 723 744 722 744 0.93 6 11 3.7e-05 0.0045 18.2 0.7 2 23 770 792 770 792 0.98 7 11 0.0052 0.62 11.4 0.0 1 21 797 817 797 818 0.94 8 11 2.4 2.9e+02 3.0 0.1 2 23 849 870 848 870 0.91 9 11 0.024 2.8 9.4 3.4 2 23 886 906 885 906 0.96 10 11 8.9e-06 0.0011 20.1 3.8 1 23 912 935 912 935 0.94 11 11 0.1 12 7.4 0.9 1 13 957 969 957 969 0.92
Sequence Information
- Coding Sequence
- ATGCTCGTCGAAGAGGACCTCGATGATACACACTTGTGCATCAAATGTAGTGCCACAATTGTCGGCCTCGATAATTACGTCCAGCATCGCAAAACGAATTGTGTTGGCGGCAAGATCCAAGGGACACGAGCTGGAGCCACCATTGTTACCGATGGCTATGGAGTAGGTTTTGAATATCCAGGATCTTCGGGCTATGTAAAGACCGCAGAGGAAGCTGTTGGTGGGAAAACGTCGAAAACTCTAAATGACCCTTATGACTTGCCCTATGAATTGGGTGCAGATGTTTTCTTCTCATCGTTGCAACTTCAAGTGTTCAAGCTAGTAGTGGAGGAGGAAAAAGTTGTAAATTCTGGAAGAGATGAGGCCGAAGGCGATGATTGGCAGGATGAGGAACAAAATAATTCCGATAGTTTGATGAAGGTTGTAAGGGATATTGGAGAGACGAAAAAATATGAACCAATATTTCAACCGATTGCATTTGGTCATGGATCTCCAGAGCCTGAACAAAGTGATGATGATGATGAAGATATTGATGAGTTTGATGAAGAGGACGATGAAGATGATCAAGATTATGTACCAACTCCGTATTGTGGGGGAAAATGGAAACCTGGGAGTCAGCCACCACTAAGAAGTGGTGGGAAATGGAAAGGCAAAAGTCATCATCAAAGCCATGCAGTTCCGAGTTCTTCTGGTGGTAAATGGCACAATAAGTATGTAGCCAAAAAGTACTTGGAACCAGAAACCTATCCGAGCCGTCCAAAACTTTCGTATAAAAAAGATAATCCATCAAAATATGAGGTTCCACAAAGCGGTGGAAAATGGAAACCTGAAAGTTCAAAAACATTGAAAATACCAGAACCACTTCCAAGTGGTGGAAAATGGAAACCCTCAGCTGAGGACGATGAGTCACCAGTTGTTCAAGCTCCTTCTACTGGAGGCAAGTGGAAACCTGAAGATGAACCTTCAACTAGTGGCAAATGGAAACCTGAAGAACGAACAACTTCAAAAATTGTTCAAGCTGAAGTTGTTACTGAATGGGATGAGACAGAAGCTTGGGAAGATGTCCACAATATAAATCCTCCAATTGAGCACACCAAAGGCAAATGGGTGCCAGGAATGAAGTATGAAAAACTCGATTACAAAGATGAGGATCTTCCACAACCTCCACAAGACTTTTGGTGTAATATTTGCTGTCGAAAACTTAAGACCAAAACTATTTTCGAAAAACACTTAAAATCAGCTGTCCATTTGAAAAAATCCGAAACCGAAGAGCAACTAGAACGTGCCGGTGTCGACAAACATCTTGAACTACCCACACAAAATCTTCAATCAGCTCCACCAGAATTCCTCTTAAATCGAAAAACTTCCCCCGAACTTGATCCGTCAAAGCGAAAAAGACGAAAAACTTTTGTCAAATGTGAAATATGCAAACATCGAATGCAAAGATATCTAATGGGCAAACATTTAATATCTCACTATCATTATGTTAGAAGACGTGCTAATTTAGCAAAGTCATATGGAATGGTTCTTGACAATATCCATCAAATAGTTCTTCAATCCCCGTTTCAATGTAGCCCCTGTAAATTCTATGCCAATGATGAAGAACAATTTCTAAACCATTGGAATTCCGTTGAACATCGTGATCGAACTGAAGGACCTGGCAAGTTTTGGTGTAGTTTCTGTCAGTTTGAATGTGAAGACAACAATCAAATGAGACGTCATCTTTTAGGAAGTGATCATGGGGAAGTCATTATGGCTATCAATAGATCAGTTCCGATAATTATAAGTAAAAAGGTATCAATTGAATGTCTAAAATGCCATCAAAGCTTTCGATATAACATCGAACTGCGACAACATGCACTTCGATGTGAAGTCTTCAAAACCGAACCAATTGGAACAGCATCTGATGAATATCAGTCAAGGTTTCGATGTGCATTGTGTCCTGAAGAAGTGCTCAAGTCGAAGACAGCTTTGCAGAGGCATGAGAAATTCAAGCACAATAAACGACGGTTTTATTGTTCGATATGTAACGAAGAGTTTAGCAACTCTGAAGCAGCTATTAAGCATCGCAAGACCAAAGAGCACCGTGAAAAGTCCACAGAAAAGTTGAATAAAGCGAAGAAGGAGAGATGCGCAAAAGTTAAAGAGGATCCCGGAGATGATTTGAAATGTGAACAATGTAATCACATGTCTTCTTCGGATGTTGAAGCCATGTTACATCAAATAAGCCATCCTGATGGCTGCAAGAAGGATGAAGGGAGTCCACCGGAAATTTCTAAGAAGAAATTAAAAGAAACTTCTTCGAGAAAGTGTTCATACTGCAAAGACTCTTTCCCAAATAAATCGGAACTTAAGGCCCATCTCAATACAATCCATCCCGAGATCAAGCATATTTGTCCACTTTGTGGAGAAGCCTTTACTCTGCCCCAAGAACTAGGTTCCCATAGAAGATACAAAATATGTGTAGCATCAACCTCTAAAAAACCATCATCTACAATCGAAACAGACACCTCATCCCAAAAAGATCCAACAACAAAATCCTGGAATTGTTCAGATTGCACATTTAGCTCTGCCTATGAATCCGAGTTGATATTCCATCGTATAATCCATTCAGAGGGTGGCTTAGAAGCCCTCGAATCGTCTGGGACAAAAATTAAATGCCAACTTTGTGAGAAATCATTTGCCAAACATTCACTTCGGTATCATTTGCGTCAGCATACCAACGAAAAGATTTTCCAATGTGAAATTTGTAAACGGTCATTTTCGAGGCGACATAATTACAAAGAACACATGGAATTTGTGCATTCGGTTGGGGATGTTGTAAGGAAACGCCACAAGGGCGGCAGTCGACGGTCAACGGATGAGAGTTTTATATGCGATACATGTGGCAAGATATTTCGAACAAAGTGA
- Protein Sequence
- MLVEEDLDDTHLCIKCSATIVGLDNYVQHRKTNCVGGKIQGTRAGATIVTDGYGVGFEYPGSSGYVKTAEEAVGGKTSKTLNDPYDLPYELGADVFFSSLQLQVFKLVVEEEKVVNSGRDEAEGDDWQDEEQNNSDSLMKVVRDIGETKKYEPIFQPIAFGHGSPEPEQSDDDDEDIDEFDEEDDEDDQDYVPTPYCGGKWKPGSQPPLRSGGKWKGKSHHQSHAVPSSSGGKWHNKYVAKKYLEPETYPSRPKLSYKKDNPSKYEVPQSGGKWKPESSKTLKIPEPLPSGGKWKPSAEDDESPVVQAPSTGGKWKPEDEPSTSGKWKPEERTTSKIVQAEVVTEWDETEAWEDVHNINPPIEHTKGKWVPGMKYEKLDYKDEDLPQPPQDFWCNICCRKLKTKTIFEKHLKSAVHLKKSETEEQLERAGVDKHLELPTQNLQSAPPEFLLNRKTSPELDPSKRKRRKTFVKCEICKHRMQRYLMGKHLISHYHYVRRRANLAKSYGMVLDNIHQIVLQSPFQCSPCKFYANDEEQFLNHWNSVEHRDRTEGPGKFWCSFCQFECEDNNQMRRHLLGSDHGEVIMAINRSVPIIISKKVSIECLKCHQSFRYNIELRQHALRCEVFKTEPIGTASDEYQSRFRCALCPEEVLKSKTALQRHEKFKHNKRRFYCSICNEEFSNSEAAIKHRKTKEHREKSTEKLNKAKKERCAKVKEDPGDDLKCEQCNHMSSSDVEAMLHQISHPDGCKKDEGSPPEISKKKLKETSSRKCSYCKDSFPNKSELKAHLNTIHPEIKHICPLCGEAFTLPQELGSHRRYKICVASTSKKPSSTIETDTSSQKDPTTKSWNCSDCTFSSAYESELIFHRIIHSEGGLEALESSGTKIKCQLCEKSFAKHSLRYHLRQHTNEKIFQCEICKRSFSRRHNYKEHMEFVHSVGDVVRKRHKGGSRRSTDESFICDTCGKIFRTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00984619;
- 90% Identity
- -
- 80% Identity
- -