Ebal007231.1
Basic Information
- Insect
- Episyrphus balteatus
- Gene Symbol
- -
- Assembly
- GCA_026256485.1
- Location
- JAGTYB010000067.1:1590219-1595713[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.6 3.2e+02 2.9 0.1 2 11 261 270 261 279 0.74 2 15 0.0012 0.15 13.4 1.6 1 23 286 309 286 309 0.96 3 15 0.41 49 5.5 0.1 2 23 317 339 316 339 0.94 4 15 0.13 16 7.0 0.1 5 23 349 368 347 368 0.92 5 15 0.098 12 7.4 1.6 2 23 376 397 375 397 0.87 6 15 0.00012 0.015 16.5 2.7 1 23 409 431 409 431 0.99 7 15 0.0023 0.27 12.6 0.5 1 23 437 460 437 460 0.93 8 15 0.00076 0.092 14.1 1.8 2 23 471 492 470 492 0.98 9 15 0.0081 0.97 10.8 2.1 1 20 515 534 515 538 0.88 10 15 0.00037 0.045 15.0 4.5 1 23 545 568 545 568 0.96 11 15 1.5e-05 0.0017 19.5 0.4 1 23 574 596 574 596 0.95 12 15 0.00053 0.063 14.6 0.9 3 23 603 623 601 623 0.97 13 15 0.002 0.24 12.7 1.4 1 23 629 651 629 651 0.97 14 15 1.9e-05 0.0023 19.1 0.6 2 23 657 678 656 678 0.94 15 15 0.13 16 7.0 3.0 1 23 683 706 683 706 0.97
Sequence Information
- Coding Sequence
- ATGGAATTCTCATCAATATGTCGCGTTTGCATGCAGCCAATTTCCATGGAGTACATCGATTTAGATACTCCATTTAATGAATCAACATACTTTGATTGCTTCAACTATTGCACCAAATTAGAAGCTAAAGCTAGCGACAATCTTCCAAAGGCAATTTGTATTTCGTGTTCGAATTTAATGCAGATGGCATATGACTTTATCACAGCTGCCTTGGAAGCAGATCGTTTGTTCCGCGAATGCGTGTTGCAGTTGGAAGAATGTGAAGAGGATATCAAAATCATGAAAAATGATCTTGAAGACTTGGATGAAATTATTCCAAAGAAATATATTGTTACCTCAAGTTTTCCTGTTGAAGAAGAAATTATCGTAACAGATATTAAACCTATAAAGCTCATTAATGACAAACAAAAATTTGATGATGGAAGTCTTATTCAAAATACAGTCGAAGAATATGAAATTGTCGAAGAATATCAAACCCATTGCTCTCCTACTACCTCCGAAGGTGTCGATAAAGGCGAAGATGAAAATGAACTACAAGAAAGCGCTTTACAGTTTTTAACAAAGAATGTGATGCAAAGAGAAAATATAATGCCTAGTATGAATAAGGAACAACAATCAGAAATTATGGAAGAAGAAACTGACTTGATCGTAGATGAACCAAATGAGGTTTCTGTTGTAGCTGAATTGGATCGAGTTGACAATTTCGACAATAATTCAATTGATGATGCTGCCGAAGATGATCAATCTGAAAAAAGTTCAAACGAAAAACAACTTAGCAATGAATGCCCTATTTGTAAAAAAATTGTTCGCAAAAACATGGCGGATCATATTAGGGAATGTTATGGCACACAACCATACACATGTGAAAAATGTGATGCTTCATTTTTCTACGTGAAAGATTTGAGAAATCACACTATAAAAAAACATAACAAATTTGAAGATTCTTGGTATTGCAATTTGTGTGGAGAAGCACTCTTGTCCAGAGCCGATCTTTCGTTACACCGAAATAAGGATCATCGTGATAAAACTCCCGGATTATGTATAACTTGTGGTAGTTCTTTTGATGATCAAAATGCTCTAACAGAGCATGTGACCAAAGAACATTGGTCTCGAAAAAGACCAGTGGAATGTCCACATTGTAAAAAGAAATTCCAATTAAAGACTCTACCACAGCATGTTCGATTTGCACATATAGATATTGTTAATGCTTCGGGAGACAAACAATTCACGTGTAAATATTGCTTTAAAAATTTTGAAGACACAAGAGAGCTGGAAGAACATACTAAAACGCATACAGGAACGCTCGAATTCTCATGTGAAATTTGCGGACAAGATTTCACAGGAAAAAGAACATTTGACAAGCATGTAGAACAAATGCACCCAACACCGGGTGATGAGGAATATGCAAAAAAATGCCCCAAATGTGATTTTACTACCTCAAACGAAGCGTTATTATTGAAACACAAAAAACGTCATTACAACAACGATTATTATAAAACCAACTTTAAGAGATACACCGCCAACAAAAAGAAGCTTAACCAATATTTATGTTCCTTCTGCCCTAAAAAATATAACAATTCTAAATCTCTGCGTGATCATGAAGATTTTAAACATGGCGACAAAAAAGCTGGACATGAATGTGATGTATGTGGCAAAAAATATTACAACAAATGTGCGTTGCGAAATCATAAGAAAAGTGCACATGGAGTTGAACGTCCATTTTTATGTGAAGAATGTCCGAAAGCATTTAAGCTTCGATCGCAATTAGTTCAACATATAAGATTTCATTCAGAAAGGAATATTGCATGTCCGTATTGTGATAAAAAGTTTTTACTACCATGCTATCTTAAAGTACATCTTCGAACGCATACAAATGAGCAACCATATGCGTGTCATTTGTGCGATAAGAGATTTGCAATTAAAGTAAGACTGACATATCATTTGGCCAAACATGATGGTGTTGTAGTCAAATGTGAATATTGTCCAGAAACTTTTAAAAATAAGGCAAGTTTAAGAATTCATCGATTTGAACATATAGGATATCCATTTGTTTGTGATATATGCCAAGAAAAACATCACAGAAGAATTGGCCTTGCCCGTCATATGAAGAGATCACATGGACTCATATATACTGAAGAAGACATCAATGAAAATCGCTTCAGAAACATGAAAAAGATCTACGGAAGAACCGACGATAATCCTGATGTTGAGCCAGAGCCCCATCCCCAGCCACAACCCGACAATACCATAGAAATTTGA
- Protein Sequence
- MEFSSICRVCMQPISMEYIDLDTPFNESTYFDCFNYCTKLEAKASDNLPKAICISCSNLMQMAYDFITAALEADRLFRECVLQLEECEEDIKIMKNDLEDLDEIIPKKYIVTSSFPVEEEIIVTDIKPIKLINDKQKFDDGSLIQNTVEEYEIVEEYQTHCSPTTSEGVDKGEDENELQESALQFLTKNVMQRENIMPSMNKEQQSEIMEEETDLIVDEPNEVSVVAELDRVDNFDNNSIDDAAEDDQSEKSSNEKQLSNECPICKKIVRKNMADHIRECYGTQPYTCEKCDASFFYVKDLRNHTIKKHNKFEDSWYCNLCGEALLSRADLSLHRNKDHRDKTPGLCITCGSSFDDQNALTEHVTKEHWSRKRPVECPHCKKKFQLKTLPQHVRFAHIDIVNASGDKQFTCKYCFKNFEDTRELEEHTKTHTGTLEFSCEICGQDFTGKRTFDKHVEQMHPTPGDEEYAKKCPKCDFTTSNEALLLKHKKRHYNNDYYKTNFKRYTANKKKLNQYLCSFCPKKYNNSKSLRDHEDFKHGDKKAGHECDVCGKKYYNKCALRNHKKSAHGVERPFLCEECPKAFKLRSQLVQHIRFHSERNIACPYCDKKFLLPCYLKVHLRTHTNEQPYACHLCDKRFAIKVRLTYHLAKHDGVVVKCEYCPETFKNKASLRIHRFEHIGYPFVCDICQEKHHRRIGLARHMKRSHGLIYTEEDINENRFRNMKKIYGRTDDNPDVEPEPHPQPQPDNTIEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -